Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032221 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 5.7e-127 457.6 233 100.0
CSS0024088 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 4.8e-126 454.5 233 99.6
CSS0026502 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 6.1e-105 384.4 231 83.5
Rhsim07G0122400 Rhododendron simsii HOM05D005427 ORTHO05D006461 1.6e-84 316.6 243 67.1
Dinv36993 Davidia involucrata HOM05D005427 ORTHO05D006461 2.7e-76 289.3 231 64.5
TAR628G1492 Trochodendron aralioides HOM05D001631 ORTHO05D001591 3.5e-76 288.9 231 63.2
GSVIVG01017423001 Vitis vinifera HOM05D005427 ORTHO05D006461 2.3e-75 286.2 234 62.0
Dinv21205 Davidia involucrata HOM05D005427 ORTHO05D006461 1.5e-71 273.5 231 63.2
QL06p037683 Quercus lobata HOM05D005427 ORTHO05D006461 1.3e-70 270.4 234 58.5
vmacro07282 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.7e-70 270.0 235 61.3
Atru.chr3.1127 Acer truncatum HOM05D005427 ORTHO05D006461 6.4e-70 268.1 231 61.0
Atru.chr3.1136 Acer truncatum HOM05D005427 ORTHO05D006461 6.4e-70 268.1 231 61.0
Nn1g05775 Nelumbo nucifera HOM05D005427 ORTHO05D006461 1.6e-68 263.5 228 57.5
vmacro05473 Vaccinium macrocarpon HOM05D005427 ORTHO05D006461 1.0e-67 260.8 264 56.4
Ciclev10026408m.g Citrus clementina HOM05D005427 ORTHO05D006461 3.9e-67 258.8 231 60.2
CiPaw.08G147100 Carya illinoinensis HOM05D005427 ORTHO05D006461 3.6e-65 252.3 237 55.3
Prupe.6G211100 Prunus persica HOM05D005427 ORTHO05D006461 3.1e-64 249.2 225 55.6
Potri.017G091300 Populus trichocarpa HOM05D005427 ORTHO05D006461 1.5e-63 246.9 231 55.4
Gorai.007G232600 Gossypium raimondii HOM05D005427 ORTHO05D006461 2.0e-63 246.5 228 55.7
TAR376G0349 Trochodendron aralioides HOM05D005427 ORTHO05D006461 2.6e-63 246.1 231 55.4
Thecc.01G082100 Theobroma cacao HOM05D005427 ORTHO05D006461 5.8e-63 245.0 238 55.0
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 7.6e-63 244.6 221 55.7
Gohir.A11G206966 Gossypium hirsutum HOM05D005427 ORTHO05D006461 2.2e-62 243.0 228 55.7
PGSC0003DMG400012980 Solanum tuberosum HOM05D005427 ORTHO05D006461 4.9e-62 241.9 231 53.2
Sopen09g003480 Solanum pennellii HOM05D005427 ORTHO05D006461 1.4e-61 240.4 231 53.2
PGR102G2470 Punica granatum HOM05D005427 ORTHO05D006461 9.3e-61 237.7 231 50.2
Solyc09g008680.4 Solanum lycopersicum HOM05D005427 ORTHO05D006461 1.6e-60 236.9 231 52.8
TWI74G0676 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 2.7e-60 236.1 221 56.1
Migut.F01758 Erythranthe guttata HOM05D005427 ORTHO05D006461 4.6e-60 235.3 218 54.6
COL.COLO4_11665 Corchorus olitorius HOM05D005427 ORTHO05D006461 2.3e-59 233.0 235 52.8
Aqoxy3G03178 Aquilegia oxysepala HOM05D005427 ORTHO05D006461 5.1e-59 231.9 233 52.4
Manes.13G105100 Manihot esculenta HOM05D005427 ORTHO05D006461 4.3e-58 228.8 215 56.3
Gohir.D11G216500 Gossypium hirsutum HOM05D005427 ORTHO05D006461 1.3e-57 227.3 207 55.6
Cfa001616 Carpinus fangiana HOM05D005427 ORTHO05D006461 1.4e-56 223.8 231 50.2
THA.LOC104819282 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 1.4e-56 223.8 222 50.5
RcHm_v2.0_Chr2g0109701 Rosa chinensis HOM05D005427 ORTHO05D006461 5.3e-56 221.9 222 51.4
FvH4_1g18830 Fragaria vesca HOM05D005427 ORTHO05D006461 9.9e-55 217.6 222 48.2
ClCG09G016510 Citrullus lanatus HOM05D005427 ORTHO05D006461 2.2e-54 216.5 222 50.9
CAN.G1830.8 Capsicum annuum HOM05D005427 ORTHO05D006461 4.9e-54 215.3 222 49.5
Phvul.003G285800 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 4.9e-54 215.3 232 49.6
Phvul.003G285200 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 8.4e-54 214.5 232 49.6
SGA_v2.0_scaffold70G23436 Striga asiatica HOM05D005427 ORTHO05D006461 7.1e-53 211.5 224 48.7
Eucgr.H02348 Eucalyptus grandis HOM05D005427 ORTHO05D006461 9.3e-53 211.1 218 49.1
Nitab4.5_0004281g0090 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.2e-52 210.7 231 48.5
Cpa.g.sc3.369 Carica papaya HOM05D005427 ORTHO05D006461 1.6e-52 210.3 231 48.5
PSO761G0697 Papaver somniferum HOM05D005427 ORTHO05D006461 1.0e-51 207.6 234 45.7
ECA233G5189 Erigeron canadensis HOM05D005427 ORTHO05D006461 1.3e-51 207.2 233 48.9
FAN23G0196 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.3e-51 207.2 235 46.0
RcHm_v2.0_Chr5g0054161 Rosa chinensis HOM05D005427 ORTHO05D006461 1.8e-51 206.8 222 48.6
DCAR_006436 Daucus carota HOM05D005427 ORTHO05D006461 5.1e-51 205.3 229 51.1
CsaV3_7G007450 Cucumis sativus L. HOM05D005427 ORTHO05D006461 6.7e-51 204.9 221 48.0
AT3G49645 Arabidopsis thaliana HOM05D005427 ORTHO05D006461 8.7e-51 204.5 221 49.8
Lalb_Chr04g0263231 Lupinus albus HOM05D005427 ORTHO05D006461 1.5e-50 203.8 232 45.7
SGA_v2.0_scaffold4G02171 Striga asiatica HOM05D005427 ORTHO05D006461 2.5e-50 203.0 224 47.3
SGA_v2.0_scaffold147G36350 Striga asiatica HOM05D005427 ORTHO05D006461 3.3e-50 202.6 224 46.9
AL7G47510 Arabidopsis lyrata HOM05D005427 ORTHO05D006461 4.3e-50 202.2 231 48.5
CANSAT01G2304 Cannabis sativa HOM05D005427 ORTHO05D006461 1.6e-49 200.3 232 47.4
Lj3g0020172 Lotus japonicus HOM05D005427 ORTHO05D006461 4.8e-49 198.7 241 43.6
Duzib264G0001 Durio zibethinus HOM05D005427 ORTHO05D006461 6.2e-49 198.4 192 55.2
Carub.0005s1599 Capsella rubella HOM05D005427 ORTHO05D006461 1.1e-48 197.6 222 46.4
Thhalv10010700m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.1e-48 197.6 222 49.1
Glyma.08G273000 Glycine max HOM05D005427 ORTHO05D006461 3.1e-48 196.1 242 46.3
MELO3C018556.2 Cucumis melo HOM05D005427 ORTHO05D006461 4.0e-48 195.7 231 45.9
Aa31LG4G18120 Aethionema arabicum HOM05D005427 ORTHO05D006461 9.0e-48 194.5 224 46.4
FAN19G1732 Fragaria x ananassa HOM05D005427 ORTHO05D006461 9.0e-48 194.5 251 41.8
A06p28350 Brassica napus HOM05D005427 ORTHO05D006461 7.6e-47 191.4 228 45.6
BraA06t25777Z Brassica rapa HOM05D005427 ORTHO05D006461 7.6e-47 191.4 228 45.6
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 7.6e-47 191.4 232 44.4
THA.LOC104799739 Tarenaya hassleriana HOM05D005427 ORTHO05D006461 7.6e-47 191.4 225 44.4
Thhalv10019696m.g Eutrema salsugineum HOM05D005427 ORTHO05D006461 1.0e-46 191.0 222 47.3
Hma1.2p1_0561F.1_g178960 Hydrangea macrophylla HOM05D005427 ORTHO05D006461 1.0e-46 191.0 160 62.5
BcaC01g02424 Brassica carinata HOM05D005427 ORTHO05D006461 2.9e-46 189.5 223 45.7
C03p65440 Brassica napus HOM05D005427 ORTHO05D006461 2.9e-46 189.5 223 45.7
BolC3t18796H Brassica oleracea HOM05D005427 ORTHO05D006461 2.9e-46 189.5 223 45.7
HanXRQChr12g0368771 Helianthus annuus HOM05D005427 ORTHO05D006461 2.9e-46 189.5 210 48.6
Sp5g12450 Schrenkiella parvula HOM05D005427 ORTHO05D006461 4.9e-46 188.7 222 45.0
EL10Ac9g20957 Beta vulgaris HOM05D005427 ORTHO05D006461 1.9e-45 186.8 216 47.2
BraA07t29893Z Brassica rapa HOM05D005427 ORTHO05D006461 1.9e-45 186.8 222 44.6
Sed0018601 Sechium edule HOM05D005427 ORTHO05D006461 2.5e-45 186.4 218 43.1
CARHR158680 Cardamine hirsuta HOM05D005427 ORTHO05D006461 3.2e-45 186.0 222 45.5
BcaB01g00686 Brassica carinata HOM05D005427 ORTHO05D006461 5.5e-45 185.3 222 44.6
Peaxi162Scf00500g00116 Petunia axillaris HOM05D005427 ORTHO05D006461 5.5e-45 185.3 207 46.9
Sc06g0009050 Simmondsia chinensis HOM05D005427 ORTHO05D006461 9.3e-45 184.5 233 45.5
AUR62041740 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.2e-44 184.1 220 48.2
Peaxi162Scf01051g00142 Petunia axillaris HOM05D005427 ORTHO05D006461 1.2e-44 184.1 222 44.6
PSO210G5957 Papaver somniferum HOM05D005427 ORTHO05D006461 4.6e-44 182.2 234 43.6
TPR.G15264 Trifolium pratense HOM05D005427 ORTHO05D006461 6.0e-44 181.8 242 43.0
AL5G29490 Arabidopsis lyrata HOM05D007023 ORTHO05D008684 7.9e-44 181.4 217 47.0
Ah.01g015840 Amaranthus hybridus HOM05D005427 ORTHO05D006461 1.3e-43 180.6 224 47.3
Hund15020 Selenicereus undatus HOM05D005427 ORTHO05D006461 5.1e-43 178.7 227 42.7
MD01G1046300 Malus domestica HOM05D005427 ORTHO05D006461 8.7e-43 177.9 181 50.3
Ah.01g003640 Amaranthus hybridus HOM05D000109 ORTHO05D000520 2.5e-42 176.4 221 42.1
A07p22100 Brassica napus HOM05D005427 ORTHO05D006461 2.5e-42 176.4 242 41.3
AUR62024067 Chenopodium quinoa HOM05D005427 ORTHO05D006461 5.7e-42 175.3 220 45.9
BraA06t24896Z Brassica rapa HOM05D007023 ORTHO05D008684 7.4e-42 174.9 209 45.9
Hund13132 Selenicereus undatus HOM05D005427 ORTHO05D006461 2.8e-41 172.9 227 42.3
BcaC07g39428 Brassica carinata HOM05D005427 ORTHO05D006461 3.7e-41 172.6 224 43.8
AUR62019836 Chenopodium quinoa HOM05D005427 ORTHO05D006461 4.8e-41 172.2 232 42.7
AUR62012052 Chenopodium quinoa HOM05D005427 ORTHO05D006461 1.1e-40 171.0 220 45.9
Psat4g120800 Pisum sativum HOM05D005427 ORTHO05D006461 1.4e-40 170.6 244 40.2
arahy.Tifrunner.gnm1.ann1.Y2QWLJ Arachis hypogaea HOM05D006058 ORTHO05D007686 9.0e-40 167.9 290 38.6
arahy.Tifrunner.gnm1.ann1.SHER6S Arachis hypogaea HOM05D006058 ORTHO05D007686 2.6e-39 166.4 256 41.8
Haze_16903 Corylus avellana HOM05D005427 ORTHO05D006461 5.9e-39 165.2 252 40.9
Glyma.20G162400 Glycine max HOM05D005427 ORTHO05D006461 2.2e-38 163.3 231 42.9
Hund00873 Selenicereus undatus HOM05D005427 ORTHO05D006461 8.5e-38 161.4 211 41.7
Phvul.002G065300 Phaseolus vulgaris HOM05D005427 ORTHO05D006461 1.1e-37 161.0 174 48.9
HPP92_024834 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.9e-37 160.2 229 41.0
HPP92_026626 Vanilla planifolia HOM05D005427 ORTHO05D006461 1.9e-37 160.2 229 41.0
C08p24660 Brassica napus HOM05D007023 ORTHO05D008684 2.7e-36 156.4 210 43.3
BolC8t50081H Brassica oleracea HOM05D007023 ORTHO05D008684 2.7e-36 156.4 210 43.3
Lsat_1_v5_gn_8_18901 Lactuca sativa HOM05D005427 ORTHO05D006461 1.0e-35 154.5 237 40.5
Medtr8g067265 Medicago truncatula HOM05D005427 ORTHO05D006461 1.5e-34 150.6 218 39.4
BcaB02g09598 Brassica carinata HOM05D005427 ORTHO05D006461 3.3e-34 149.4 223 39.0
Os10g0360900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 7.4e-34 148.3 225 33.8
A06p18060 Brassica napus HOM05D007023 ORTHO05D008684 2.2e-33 146.7 209 39.7
Zm00001eb210960 Zea mays HOM05D005427 ORTHO05D006461 1.1e-32 144.4 217 36.4
FAN27G1155 Fragaria x ananassa HOM05D005427 ORTHO05D006461 5.3e-32 142.1 220 36.8
Sabra17G0080400 Salix brachista HOM05D005427 ORTHO05D006461 1.5e-31 140.6 217 43.3
Actinidia11934 Actinidia chinensis HOM05D005427 ORTHO05D006461 3.4e-31 139.4 121 61.2
Zm00001eb064010 Zea mays HOM05D005427 ORTHO05D006461 5.9e-31 138.7 244 33.6
Cc09_g03000 Coffea canephora HOM05D005427 ORTHO05D006461 1.1e-29 134.4 134 51.5
FAN26G2664 Fragaria x ananassa HOM05D005427 ORTHO05D006461 1.1e-29 134.4 228 36.4
TWI77G0140 Tripterygium wilfordii HOM05D005427 ORTHO05D006461 1.4e-29 134.0 116 56.0
CSS0003252 Camellia sinensis var. sinensis HOM05D005427 ORTHO05D006461 1.8e-27 127.1 76 80.3
Os07g0264900 Oryza sativa ssp. japonica HOM05D005427 ORTHO05D006461 1.7e-25 120.6 175 36.6
Rhsim10G0082400 Rhododendron simsii HOM05D005427 ORTHO05D006461 4.8e-25 119.0 78 73.1
Cc09_g02990 Coffea canephora HOM05D005427 ORTHO05D006461 9.1e-24 114.8 91 61.5
EL10Ac6g13479 Beta vulgaris HOM05D005427 ORTHO05D006461 4.5e-23 112.5 186 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2937 Anthoceros agrestis HOM05D005427 ORTHO05D006461 1.3e-22 110.9 211 30.3
Nitab4.5_0006709g0040 Nicotiana tabacum HOM05D005427 ORTHO05D006461 1.7e-22 110.5 81 61.7
VMungo1309G2225 Vigna mungo HOM05D005427 ORTHO05D006461 3.2e-21 106.3 138 44.9
Pp3c24_9930 Physcomitrium patens HOM05D005427 ORTHO05D006461 9.4e-21 104.8 221 26.7
MSTRG.375 Avicennia marina HOM05D005427 ORTHO05D006461 1.6e-20 104.0 82 59.8
Carub.0005s0959 Capsella rubella HOM05D005427 ORTHO05D006461 1.4e-19 100.9 112 49.1
SalBow7G4264 Salvia bowleyana HOM05D005427 ORTHO05D006461 9.7e-18 94.7 101 48.5
MBI16_g14676_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 4.8e-17 92.4 164 34.1
MD00G1139600 Malus domestica HOM05D005427 ORTHO05D006461 4.8e-17 92.4 56 76.8
MD04G1240700 Malus domestica HOM05D005427 ORTHO05D006461 4.8e-17 92.4 56 76.8
Ah.16g109230 Amaranthus hybridus HOM05D005427 ORTHO05D006461 9.1e-16 88.2 122 36.9
SMO367G1008 Selaginella moellendorffii HOM05D005427 ORTHO05D006461 1.2e-15 87.8 182 28.6
MBI16_g26727_MAGBIO Magnolia biondii HOM05D005427 ORTHO05D006461 3.5e-15 86.3 104 44.2
Actinidia12203 Actinidia chinensis HOM05D005427 ORTHO05D006461 3.3e-10 69.7 59 61.0
AagrBONN_evm.TU.Sc2ySwM_344.3300 Anthoceros agrestis HOM05D005427 ORTHO05D006461 5.7e-10 68.9 128 33.6
SEGI_00262 Sequoiadendron giganteum HOM05D005427 ORTHO05D006461 1.7e-09 67.4 63 44.4
Lsat_1_v5_gn_7_80981 Lactuca sativa HOM05D005427 ORTHO05D006461 4.8e-09 65.9 62 58.1
Mapoly0002s0147 Marchantia polymorpha HOM05D005427 ORTHO05D006461 4.1e-08 62.8 229 25.3
Mapoly0085s0034 Marchantia polymorpha HOM05D005427 ORTHO05D006461 9.1e-08 61.6 214 23.4
Mapoly0028s0128 Marchantia polymorpha HOM05D005427 ORTHO05D006461 6.5e-06 55.5 214 24.3


User provided reference genes

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