Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 5.9e-255 884.0 559 100.0
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 2.0e-173 613.2 447 87.2
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 3.7e-164 582.4 607 59.6
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 6.7e-158 561.6 558 70.1
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.1e-157 560.8 481 77.5
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.5e-157 560.5 583 67.8
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 4.4e-157 558.9 473 77.6
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 4.4e-157 558.9 482 76.8
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 5.7e-157 558.5 471 76.9
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 1.7e-156 557.0 491 76.0
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.2e-156 556.6 485 76.7
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 3.7e-156 555.8 429 77.9
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 3.7e-156 555.8 521 72.7
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 3.7e-156 555.8 501 73.3
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 6.3e-156 555.1 441 81.2
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 8.2e-156 554.7 442 80.1
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.4e-155 553.9 478 71.3
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.8e-155 553.5 561 67.7
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.8e-155 553.5 500 71.6
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 1.8e-155 553.5 486 70.6
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 1.8e-155 553.5 443 74.7
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 2.4e-155 553.1 512 69.7
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 3.1e-155 552.7 485 69.7
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 4.1e-155 552.4 519 72.4
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 7.0e-155 551.6 469 77.2
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 9.1e-155 551.2 483 70.4
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 9.1e-155 551.2 564 60.3
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 2.6e-154 549.7 448 73.4
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.0e-153 547.7 500 72.4
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 1.7e-153 547.0 504 73.0
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 1.7e-153 547.0 499 73.9
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 2.2e-153 546.6 508 68.1
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 3.8e-153 545.8 450 77.3
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 8.5e-153 544.7 476 75.0
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 3.2e-152 542.7 448 77.2
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 3.2e-152 542.7 467 71.5
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 7.2e-152 541.6 428 76.2
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 9.4e-152 541.2 449 73.5
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 9.4e-152 541.2 473 69.8
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 2.1e-151 540.0 480 70.0
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 2.1e-151 540.0 482 70.1
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 4.7e-151 538.9 461 71.1
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 4.7e-151 538.9 482 69.5
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 6.1e-151 538.5 443 79.5
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-150 537.0 482 74.7
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 3.0e-150 536.2 496 71.0
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 4.0e-150 535.8 485 68.0
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 4.0e-150 535.8 503 72.8
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 4.0e-150 535.8 454 71.8
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 6.7e-150 535.0 478 72.8
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 8.8e-150 534.6 451 78.0
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 8.8e-150 534.6 464 74.8
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 1.2e-149 534.3 447 72.3
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-149 534.3 483 71.8
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-149 533.9 482 74.1
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.5e-149 533.9 482 74.3
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 2.0e-149 533.5 486 72.2
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 2.0e-149 533.5 488 72.5
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.6e-149 533.1 480 75.0
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.7e-149 531.9 482 71.8
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 1.3e-148 530.8 470 73.8
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 1.8e-147 526.9 484 69.4
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 2.4e-147 526.6 389 85.6
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 2.4e-147 526.6 527 63.8
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 4.5e-146 522.3 487 61.4
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 1.0e-145 521.2 503 70.8
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 1.0e-145 521.2 484 72.7
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.3e-145 520.8 514 64.8
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 6.5e-145 518.5 471 74.5
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 6.5e-145 518.5 404 75.7
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.5e-144 515.4 481 73.0
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-143 513.5 481 73.0
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 2.6e-141 506.5 451 73.2
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.6e-141 506.5 498 70.5
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 3.4e-141 506.1 445 74.2
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 3.4e-141 506.1 445 74.2
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 4.4e-141 505.8 561 55.1
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 5.7e-141 505.4 446 71.1
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 9.8e-141 504.6 517 65.6
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 9.8e-141 504.6 502 66.7
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 1.3e-140 504.2 446 67.5
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.7e-140 503.8 464 71.6
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 2.8e-140 503.1 501 68.1
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 4.8e-140 502.3 442 74.2
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 6.3e-140 501.9 503 66.8
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 8.3e-140 501.5 457 72.0
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.8e-139 500.4 502 67.1
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 3.1e-139 499.6 530 67.0
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 4.1e-139 499.2 442 74.9
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 7.7e-138 495.0 506 63.0
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 7.7e-138 495.0 400 74.5
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 2.9e-137 493.0 462 71.6
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 2.9e-137 493.0 462 71.6
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 5.0e-137 492.3 468 70.5
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 5.5e-136 488.8 493 65.7
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 1.4e-134 484.2 379 74.7
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 2.3e-134 483.4 488 69.7
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 3.4e-133 479.6 482 63.7
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 3.5e-130 469.5 483 69.2
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 8.6e-129 464.9 488 69.1
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 8.6e-129 464.9 482 68.7
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 1.1e-128 464.5 440 66.4
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.0e-126 458.0 484 69.2
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 1.4e-126 457.6 463 64.4
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.7e-124 450.7 459 67.1
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 2.2e-124 450.3 473 66.2
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 2.9e-124 449.9 354 69.8
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 4.6e-122 442.6 572 58.6
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.0e-121 441.4 423 72.1
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 3.9e-121 439.5 466 67.0
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.9e-120 437.2 550 61.6
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 1.1e-118 431.4 488 59.8
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 2.1e-111 407.1 560 48.9
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 6.2e-111 405.6 475 57.7
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 1.5e-109 401.0 391 73.9
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 7.5e-109 398.7 428 62.4
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.9e-107 394.0 386 67.1
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 6.0e-106 389.0 465 62.2
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.1e-103 380.6 366 67.8
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 6.9e-94 349.0 329 64.7
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 2.6e-93 347.1 370 71.4
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 4.4e-93 346.3 344 73.3
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 9.9e-93 345.1 389 59.6
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 1.3e-87 328.2 353 58.1
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 4.6e-82 309.7 598 43.8
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 2.1e-79 300.8 421 53.2
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 2.8e-79 300.4 277 56.7
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 8.4e-76 288.9 287 77.4
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 6.7e-73 279.3 241 63.9
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 6.7e-73 279.3 472 46.2
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 9.0e-62 242.3 377 40.6
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.4e-54 217.6 150 70.0
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 1.0e-52 212.2 135 79.3
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.7e-50 203.4 139 69.1
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.9e-50 202.6 139 69.1
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.3e-49 201.1 139 68.3
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 2.9e-44 184.1 181 56.4
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.5e-44 182.6 166 58.4
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.5e-43 181.8 134 65.7
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.9e-43 181.4 134 64.9
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.6e-37 161.0 128 63.3
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 7.7e-37 159.5 171 52.0
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 7.5e-32 142.9 95 76.8
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 6.1e-26 123.2 104 57.7
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.8e-25 121.7 71 77.5
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 6.8e-25 119.8 92 65.2
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 1.9e-19 101.7 307 29.0
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 4.2e-19 100.5 208 32.7
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 9.5e-19 99.4 56 83.9
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 4.9e-15 87.0 53 75.5
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 3.5e-13 80.9 71 66.2
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 1.3e-12 79.0 52 78.8
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 5.8e-08 63.5 57 61.4
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 1.3e-07 62.4 123 36.6
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 6.4e-07 60.1 68 50.0
Lsat_1_v5_gn_9_31241 Lactuca sativa HOM05D000436 ORTHO05D000678 7.0e-06 56.6 36 66.7


User provided reference genes

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