Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 9.1e-179 630.2 331 100.0
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 1.8e-134 483.0 333 75.7
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.4e-131 472.6 328 75.0
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.3e-124 450.3 332 70.8
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 9.3e-123 444.1 330 69.7
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 2.1e-122 443.0 332 70.5
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 6.0e-122 441.4 334 71.0
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 4.3e-120 435.3 330 70.0
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 4.0e-118 428.7 329 68.7
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 1.5e-117 426.8 326 69.0
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.4e-116 421.0 333 66.7
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.4e-116 421.0 335 66.0
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.1e-115 420.6 332 67.2
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.9e-115 419.9 329 67.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 3.2e-115 419.1 334 65.3
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 4.6e-114 415.2 329 64.1
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 1.1e-112 410.6 329 66.0
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.9e-112 409.8 323 66.9
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 1.9e-112 409.8 328 64.0
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 1.9e-112 409.8 370 61.4
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 4.3e-112 408.7 329 64.4
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 7.4e-112 407.9 276 73.6
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 1.1e-110 404.1 329 63.5
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 1.4e-110 403.7 334 63.8
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 2.4e-110 402.9 334 65.0
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.4e-110 402.9 329 63.5
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 3.1e-110 402.5 335 65.7
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 3.1e-110 402.5 333 62.5
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 2.6e-109 399.4 334 62.3
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 2.6e-109 399.4 335 65.4
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 3.4e-109 399.1 328 63.7
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 3.4e-109 399.1 334 64.7
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 7.6e-109 397.9 334 63.2
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 1.7e-108 396.7 328 64.6
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 2.9e-108 396.0 330 64.5
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 3.8e-108 395.6 387 56.6
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 8.4e-108 394.4 333 64.6
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.5e-106 389.0 328 62.5
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 6.0e-106 388.3 333 63.4
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 1.0e-105 387.5 336 61.0
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.3e-105 386.3 333 61.3
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 5.7e-104 381.7 328 61.9
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.4e-104 381.3 339 61.7
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 7.4e-104 381.3 333 62.5
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 1.6e-103 380.2 336 60.7
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 8.2e-103 377.9 339 61.4
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.4e-102 377.1 329 62.6
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 1.8e-102 376.7 330 61.2
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.2e-101 374.0 333 61.9
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 2.0e-101 373.2 326 62.6
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 2.6e-101 372.9 328 58.2
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 1.7e-100 370.2 327 59.9
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.7e-100 370.2 328 57.9
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.7e-100 370.2 334 61.4
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.2e-100 369.8 333 61.3
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 2.9e-100 369.4 328 58.2
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 6.5e-100 368.2 334 58.7
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 8.4e-100 367.9 331 59.5
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.4e-99 367.1 331 59.8
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 1.9e-99 366.7 333 58.9
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 2.5e-99 366.3 333 61.0
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 3.2e-99 365.9 274 68.6
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 5.5e-99 365.2 328 58.2
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 1.2e-98 364.0 272 69.5
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 4.6e-98 362.1 328 59.5
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 4.6e-98 362.1 334 56.0
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 7.9e-98 361.3 339 59.3
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 3.0e-97 359.4 333 59.8
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 8.7e-97 357.8 340 58.5
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 2.8e-95 352.8 335 58.2
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 2.8e-95 352.8 327 58.7
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 3.7e-95 352.4 339 58.4
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 8.2e-95 351.3 246 74.8
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.1e-94 350.9 340 57.1
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 2.4e-94 349.7 285 63.5
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 5.3e-94 348.6 338 58.6
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 5.3e-94 348.6 362 55.5
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 6.9e-94 348.2 331 55.0
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 3.4e-93 345.9 333 57.1
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 4.5e-93 345.5 322 57.1
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 1.3e-92 344.0 339 56.6
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 8.5e-92 341.3 337 53.7
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.1e-91 340.9 338 53.8
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.9e-91 340.1 336 57.1
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 4.2e-91 339.0 332 57.8
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 1.4e-89 334.0 346 55.8
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.1e-88 330.9 345 53.0
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 4.3e-88 328.9 332 54.5
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 7.4e-88 328.2 333 55.6
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 7.4e-88 328.2 333 53.5
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 4.8e-87 325.5 335 54.6
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 2.4e-86 323.2 340 52.1
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 9.1e-86 321.2 330 54.8
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 3.4e-85 319.3 306 56.2
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 7.7e-85 318.2 250 66.8
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 1.3e-84 317.4 322 55.6
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 1.7e-84 317.0 273 60.1
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 6.5e-84 315.1 337 51.9
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 1.1e-83 314.3 322 55.3
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.4e-83 313.9 340 50.9
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 5.5e-83 312.0 338 53.0
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 5.5e-83 312.0 338 53.0
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 5.5e-83 312.0 338 53.0
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 9.4e-83 311.2 332 53.9
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.6e-82 310.5 341 51.3
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 3.6e-82 309.3 341 51.0
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 6.1e-82 308.5 334 50.3
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 1.0e-81 307.8 340 52.1
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.8e-81 307.0 334 52.1
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 5.1e-81 305.4 334 53.0
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.1e-80 304.3 330 50.0
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 2.6e-80 303.1 337 50.7
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 2.6e-80 303.1 337 50.7
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 4.4e-80 302.4 340 52.6
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 4.8e-79 298.9 327 51.4
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 4.8e-79 298.9 329 52.0
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 8.2e-79 298.1 378 48.4
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.1e-78 297.7 340 52.9
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.1e-78 297.7 334 52.7
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.4e-78 297.4 331 52.3
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 1.4e-78 297.4 335 52.5
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 7.0e-78 295.0 336 50.6
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 2.0e-77 293.5 331 50.8
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 2.6e-77 293.1 340 52.4
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.7e-76 290.4 336 50.9
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 2.2e-76 290.0 340 52.6
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 1.9e-75 287.0 278 55.4
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 3.0e-73 279.6 245 58.0
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 2.0e-72 276.9 213 65.3
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 4.4e-72 275.8 315 51.1
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 1.7e-71 273.9 340 50.0
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 2.8e-71 273.1 369 47.7
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 8.2e-71 271.6 232 65.1
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 7.0e-70 268.5 329 49.5
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.0e-69 266.9 293 51.5
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 2.5e-67 260.0 332 49.4
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 7.2e-67 258.5 329 48.3
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-62 244.6 261 53.3
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 1.0e-57 228.0 165 67.9
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 1.2e-56 224.6 175 62.3
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.7e-56 222.2 217 60.4
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 7.5e-56 221.9 165 63.0
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.1e-54 216.5 288 47.9
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 2.0e-53 213.8 340 43.5
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 3.5e-53 213.0 320 43.4
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 1.0e-52 211.5 242 48.3
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 3.0e-49 199.9 204 60.3
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.0e-48 197.2 204 59.8
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.7e-47 194.1 204 57.4
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 7.0e-46 188.7 329 39.2
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 2.7e-45 186.8 233 45.1
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.2e-42 177.9 141 58.9
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 3.1e-41 173.3 134 58.2
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.0e-40 170.6 175 56.0
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.9e-39 166.8 126 62.7
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 2.0e-37 160.6 148 60.8
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.3e-33 147.1 203 47.3
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 4.4e-32 142.9 123 56.1
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 8.6e-28 128.6 209 41.1
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.2e-26 124.8 139 50.4
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 6.8e-25 119.0 133 52.6
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 3.4e-24 116.7 97 53.6
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 4.4e-24 116.3 97 59.8
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 8.1e-18 95.5 220 32.3
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 3.1e-17 93.6 88 47.7
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 2.2e-15 87.4 305 27.5
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.9e-15 87.0 137 39.4
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 7.1e-14 82.4 58 67.2
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 7.8e-13 79.0 60 68.3
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.8e-09 67.8 243 27.6
VMungo1127G1263 Vigna mungo HOM05D004073 ORTHO05D004785 4.2e-06 56.6 67 41.8


User provided reference genes

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