Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032153 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.3e-64 249.6 126 100.0
CSS0008437 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 6.6e-61 237.3 124 96.8
Gohir.D09G248900 Gossypium hirsutum HOM05D003980 ORTHO05D005301 3.6e-51 204.9 114 86.0
Gorai.006G273300 Gossypium raimondii HOM05D003980 ORTHO05D005301 3.6e-51 204.9 114 86.0
Atru.chr6.1901 Acer truncatum HOM05D003980 ORTHO05D005301 2.3e-50 202.2 114 85.1
Gohir.A09G248100 Gossypium hirsutum HOM05D003980 ORTHO05D005301 5.2e-50 201.1 114 85.1
Actinidia25530 Actinidia chinensis HOM05D003980 ORTHO05D005301 1.2e-49 199.9 114 86.8
COL.COLO4_37237 Corchorus olitorius HOM05D003980 ORTHO05D005301 2.6e-49 198.7 114 84.2
Duzib084G0479 Durio zibethinus HOM05D003980 ORTHO05D005301 1.3e-48 196.4 114 83.3
CSS0000982 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 1.7e-48 196.1 114 86.8
Thecc.03G138500 Theobroma cacao HOM05D003980 ORTHO05D005301 1.7e-48 196.1 114 82.5
Ciclev10030650m.g Citrus clementina HOM05D003980 ORTHO05D005301 2.2e-48 195.7 114 84.2
Duzib205G0834 Durio zibethinus HOM05D003980 ORTHO05D005301 8.3e-48 193.7 114 82.5
Cfa018720 Carpinus fangiana HOM05D003980 ORTHO05D005301 1.1e-47 193.4 114 82.5
Dinv13736 Davidia involucrata HOM05D003980 ORTHO05D005301 1.1e-47 193.4 114 86.8
TWI14G0519 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 3.2e-47 191.8 123 77.2
vmacro19166 Vaccinium macrocarpon HOM05D003980 ORTHO05D005301 3.2e-47 191.8 114 85.1
HanXRQChr16g0498871 Helianthus annuus HOM05D003980 ORTHO05D005301 5.4e-47 191.0 114 81.6
RcHm_v2.0_Chr7g0188941 Rosa chinensis HOM05D003980 ORTHO05D005301 7.0e-47 190.7 114 83.3
Potri.015G105000 Populus trichocarpa HOM05D003980 ORTHO05D005301 1.2e-46 189.9 114 82.5
Haze_07113 Corylus avellana HOM05D003980 ORTHO05D005301 1.6e-46 189.5 114 81.6
Solyc03g118350.4 Solanum lycopersicum HOM05D003980 ORTHO05D005301 1.6e-46 189.5 114 83.3
Sopen03g037250 Solanum pennellii HOM05D003980 ORTHO05D005301 1.6e-46 189.5 114 83.3
Cc04_g05920 Coffea canephora HOM05D003980 ORTHO05D005301 2.7e-46 188.7 114 83.3
FAN18G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.7e-46 188.7 114 82.5
Rhsim08G0195900 Rhododendron simsii HOM05D003980 ORTHO05D005301 2.7e-46 188.7 114 84.2
ECA232G4466 Erigeron canadensis HOM05D003980 ORTHO05D005301 3.5e-46 188.3 114 80.7
PGSC0003DMG401014249 Solanum tuberosum HOM05D003980 ORTHO05D005301 3.5e-46 188.3 114 82.5
THA.LOC104821537 Tarenaya hassleriana HOM05D003980 ORTHO05D005301 3.5e-46 188.3 114 80.7
ClCG06G018320 Citrullus lanatus HOM05D003980 ORTHO05D005301 6.0e-46 187.6 114 81.6
MELO3C026163.2 Cucumis melo HOM05D003980 ORTHO05D005301 6.0e-46 187.6 114 81.6
CsaV3_1G000110 Cucumis sativus L. HOM05D003980 ORTHO05D005301 6.0e-46 187.6 114 81.6
MD06G1132400 Malus domestica HOM05D003980 ORTHO05D005301 6.0e-46 187.6 123 77.2
MD14G1148800 Malus domestica HOM05D003980 ORTHO05D005301 6.0e-46 187.6 114 82.5
Peaxi162Scf00314g00535 Petunia axillaris HOM05D003980 ORTHO05D005301 7.8e-46 187.2 109 84.4
QL10p000901 Quercus lobata HOM05D003980 ORTHO05D005301 7.8e-46 187.2 114 81.6
TWI39G0366 Tripterygium wilfordii HOM05D003980 ORTHO05D005301 7.8e-46 187.2 114 80.7
CiPaw.11G001400 Carya illinoinensis HOM05D003980 ORTHO05D005301 1.3e-45 186.4 114 80.7
FAN13G1995 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.7e-45 186.0 114 80.7
HanXRQChr09g0273931 Helianthus annuus HOM05D003980 ORTHO05D005301 1.7e-45 186.0 114 80.7
Hund10056 Selenicereus undatus HOM05D003980 ORTHO05D005301 1.7e-45 186.0 114 81.6
Dinv23210 Davidia involucrata HOM05D003980 ORTHO05D005301 2.3e-45 185.7 114 83.3
FAN08G3345 Fragaria x ananassa HOM05D003980 ORTHO05D005301 2.3e-45 185.7 114 80.7
Manes.06G125700 Manihot esculenta HOM05D003980 ORTHO05D005301 2.3e-45 185.7 114 80.7
Aqoxy5G03175 Aquilegia oxysepala HOM05D003980 ORTHO05D005301 3.0e-45 185.3 114 80.7
MSTRG.11233 Avicennia marina HOM05D003980 ORTHO05D005301 3.0e-45 185.3 114 81.6
Lsat_1_v5_gn_4_84700 Lactuca sativa HOM05D003980 ORTHO05D005301 3.0e-45 185.3 114 79.8
FvH4_5g09220 Fragaria vesca HOM05D003980 ORTHO05D005301 3.9e-45 184.9 114 80.7
Nitab4.5_0000663g0190 Nicotiana tabacum HOM05D003980 ORTHO05D005301 5.0e-45 184.5 109 83.5
Aa31LG11G3070 Aethionema arabicum HOM05D003980 ORTHO05D005301 6.6e-45 184.1 114 78.1
SalBow7G4845 Salvia bowleyana HOM05D003980 ORTHO05D005301 6.6e-45 184.1 115 82.6
Sabra15G0125200 Salix brachista HOM05D003980 ORTHO05D005301 1.5e-44 183.0 121 75.2
Migut.I00610 Erythranthe guttata HOM05D003980 ORTHO05D005301 1.9e-44 182.6 114 78.9
FAN04G0599 Fragaria x ananassa HOM05D003980 ORTHO05D005301 1.9e-44 182.6 114 79.8
ATR0693G246 Amborella trichopoda HOM05D003980 ORTHO05D005301 2.5e-44 182.2 114 78.1
Nitab4.5_0002450g0020 Nicotiana tabacum HOM05D003980 ORTHO05D005301 2.5e-44 182.2 109 82.6
EL10Ac5g11306 Beta vulgaris HOM05D003980 ORTHO05D005301 3.3e-44 181.8 114 78.9
GSVIVG01008633001 Vitis vinifera HOM05D003980 ORTHO05D005301 4.3e-44 181.4 114 80.7
Nn4g22168 Nelumbo nucifera HOM05D003980 ORTHO05D005301 5.6e-44 181.0 114 80.7
Potri.012G105800 Populus trichocarpa HOM05D003980 ORTHO05D005301 5.6e-44 181.0 114 79.8
Lj9A485G82 Lonicera japonica HOM05D003980 ORTHO05D005301 7.3e-44 180.6 114 78.1
Prupe.5G143400 Prunus persica HOM05D003980 ORTHO05D005301 7.3e-44 180.6 114 78.9
Hund02497 Selenicereus undatus HOM05D003980 ORTHO05D005301 7.3e-44 180.6 109 81.7
TAR371G0735 Trochodendron aralioides HOM05D003980 ORTHO05D005301 7.3e-44 180.6 114 79.8
Lj4g0027174 Lotus japonicus HOM05D003980 ORTHO05D005301 1.2e-43 179.9 114 79.8
CANSAT56G3290 Cannabis sativa HOM05D003980 ORTHO05D005301 1.6e-43 179.5 114 78.9
DCAR_025658 Daucus carota HOM05D003980 ORTHO05D005301 2.1e-43 179.1 114 78.9
Eucgr.B00073 Eucalyptus grandis HOM05D003980 ORTHO05D005301 2.8e-43 178.7 114 75.4
PSO591G0475 Papaver somniferum HOM05D003980 ORTHO05D005301 2.8e-43 178.7 114 79.8
PSO832G3889 Papaver somniferum HOM05D003980 ORTHO05D005301 2.8e-43 178.7 114 79.8
CARHR189830 Cardamine hirsuta HOM05D003980 ORTHO05D005301 3.6e-43 178.3 114 75.4
Cpa.g.sc4.108 Carica papaya HOM05D003980 ORTHO05D005301 3.6e-43 178.3 112 78.6
Sabra12G0078100 Salix brachista HOM05D003980 ORTHO05D005301 8.1e-43 177.2 114 78.1
Thhalv10003616m.g Eutrema salsugineum HOM05D003980 ORTHO05D005301 1.1e-42 176.8 115 76.5
PGR083G0225 Punica granatum HOM05D003980 ORTHO05D005301 1.4e-42 176.4 115 79.1
TPR.G21586 Trifolium pratense HOM05D003980 ORTHO05D005301 1.4e-42 176.4 114 78.9
Phvul.002G282600 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 1.8e-42 176.0 114 77.2
DCAR_021407 Daucus carota HOM05D003980 ORTHO05D005301 3.1e-42 175.3 114 78.1
Ah.02g114660 Amaranthus hybridus HOM05D003980 ORTHO05D005301 4.0e-42 174.9 114 78.9
BcaNung01844 Brassica carinata HOM05D003980 ORTHO05D005301 5.2e-42 174.5 115 74.8
C07p43870 Brassica napus HOM05D003980 ORTHO05D005301 5.2e-42 174.5 115 74.8
BolC7t44915H Brassica oleracea HOM05D003980 ORTHO05D005301 5.2e-42 174.5 115 74.8
Sp2g23510 Schrenkiella parvula HOM05D003980 ORTHO05D005301 6.8e-42 174.1 115 74.8
arahy.Tifrunner.gnm1.ann1.1NY8SK Arachis hypogaea HOM05D003980 ORTHO05D005301 1.2e-41 173.3 114 76.3
A06p34620 Brassica napus HOM05D003980 ORTHO05D005301 1.2e-41 173.3 115 73.9
BraA06t26390Z Brassica rapa HOM05D003980 ORTHO05D005301 1.2e-41 173.3 115 73.9
Psat5g054480 Pisum sativum HOM05D003980 ORTHO05D005301 1.5e-41 172.9 114 77.2
VMungo0251G0815 Vigna mungo HOM05D003980 ORTHO05D005301 2.6e-41 172.2 113 77.9
Lalb_Chr23g0272921 Lupinus albus HOM05D003980 ORTHO05D005301 3.4e-41 171.8 114 77.2
Sc04g0000260 Simmondsia chinensis HOM05D003980 ORTHO05D005301 7.5e-41 170.6 114 76.3
Glyma.05G201200 Glycine max HOM05D003980 ORTHO05D005301 9.8e-41 170.2 114 75.4
arahy.Tifrunner.gnm1.ann1.US1BEE Arachis hypogaea HOM05D003980 ORTHO05D005301 1.3e-40 169.9 114 76.3
Lalb_Chr12g0202411 Lupinus albus HOM05D003980 ORTHO05D005301 1.3e-40 169.9 114 75.4
Glyma.04G200300 Glycine max HOM05D003980 ORTHO05D005301 1.7e-40 169.5 114 75.4
Nn3g16303 Nelumbo nucifera HOM05D003980 ORTHO05D005301 1.7e-40 169.5 114 78.1
Lalb_Chr13g0297021 Lupinus albus HOM05D003980 ORTHO05D005301 2.2e-40 169.1 114 74.6
Sed0025035 Sechium edule HOM05D003980 ORTHO05D005301 2.2e-40 169.1 117 73.5
Ca_17584_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 2.9e-40 168.7 115 76.5
Medtr3g498735 Medicago truncatula HOM05D003980 ORTHO05D005301 2.9e-40 168.7 114 76.3
Glyma.08G008600 Glycine max HOM05D003980 ORTHO05D005301 3.7e-40 168.3 116 75.0
AUR62009517 Chenopodium quinoa HOM05D003980 ORTHO05D005301 4.9e-40 167.9 114 76.3
AUR62034771 Chenopodium quinoa HOM05D003980 ORTHO05D005301 4.9e-40 167.9 114 76.3
Lj1g0007025 Lotus japonicus HOM05D003980 ORTHO05D005301 8.3e-40 167.2 116 74.1
TPR.G12812 Trifolium pratense HOM05D003980 ORTHO05D005301 8.3e-40 167.2 115 73.9
unitig_22.g6271 Utricularia gibba HOM05D003980 ORTHO05D005301 8.3e-40 167.2 115 78.3
arahy.Tifrunner.gnm1.ann1.JJXJ29 Arachis hypogaea HOM05D003980 ORTHO05D005301 1.1e-39 166.8 114 75.4
MBI19_g26308_MAGBIO Magnolia biondii HOM05D003980 ORTHO05D005301 1.4e-39 166.4 113 73.5
Medtr8g100000 Medicago truncatula HOM05D003980 ORTHO05D005301 1.9e-39 166.0 115 74.8
AL6G34990 Arabidopsis lyrata HOM05D003980 ORTHO05D005301 3.2e-39 165.2 114 71.1
AT5G23720 Arabidopsis thaliana HOM05D003980 ORTHO05D005301 3.2e-39 165.2 114 71.1
Ca_16085_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 4.1e-39 164.9 113 74.3
Phvul.009G164700 Phaseolus vulgaris HOM05D003980 ORTHO05D005301 5.4e-39 164.5 114 71.9
Carub.0006s2147 Capsella rubella HOM05D003980 ORTHO05D005301 2.1e-38 162.5 114 70.2
Lj5A88T63 Lonicera japonica HOM05D003980 ORTHO05D005301 4.6e-38 161.4 126 70.6
VMungo1309G0598 Vigna mungo HOM05D003980 ORTHO05D005301 7.8e-38 160.6 114 71.9
Ca_14153_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 3.0e-37 158.7 118 70.3
HPP92_006911 Vanilla planifolia HOM05D003980 ORTHO05D005301 8.6e-37 157.1 114 69.3
Ca_10885_v3 Cicer arietinum L. HOM05D003980 ORTHO05D005301 4.3e-36 154.8 113 71.7
Os01g0311500 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 1.2e-35 153.3 114 70.2
CDE01G0794 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 1.6e-35 152.9 114 68.4
Zm00001eb130450 Zea mays HOM05D003980 ORTHO05D005301 4.7e-35 151.4 114 69.3
Os01g0347000 Oryza sativa ssp. japonica HOM05D003980 ORTHO05D005301 1.4e-34 149.8 113 66.4
Zm00001eb340730 Zea mays HOM05D003980 ORTHO05D005301 4.4e-33 144.8 113 63.7
SEGI_36335 Sequoiadendron giganteum HOM05D003980 ORTHO05D005301 3.7e-32 141.7 115 64.3
SHI14120 Sapria himalayana HOM05D003980 ORTHO05D005301 1.0e-29 133.7 212 42.0
Psat5g054520 Pisum sativum HOM05D003980 ORTHO05D005301 1.5e-28 129.8 123 56.1
Psat7g039040 Pisum sativum HOM05D003980 ORTHO05D005301 7.6e-25 117.5 76 76.3
Mapoly0024s0055 Marchantia polymorpha HOM05D003980 ORTHO05D005301 1.7e-24 116.3 114 57.0
Pp3c9_1160 Physcomitrium patens HOM05D003980 ORTHO05D005301 3.8e-24 115.2 123 52.8
Pp3c9_1168 Physcomitrium patens HOM05D003980 ORTHO05D005301 3.8e-24 115.2 123 52.8
CDE05G3337 Ceratophyllum demersum HOM05D003980 ORTHO05D005301 3.5e-22 108.6 81 69.1
SGA_v2.0_scaffold143G35744 Striga asiatica HOM05D003980 ORTHO05D005301 1.9e-20 102.8 61 82.0
SMO116G0359 Selaginella moellendorffii HOM05D003980 ORTHO05D005301 7.3e-20 100.9 114 49.1
Actinidia18313 Actinidia chinensis HOM05D003980 ORTHO05D005301 2.0e-17 92.8 53 84.9
CSS0026541 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 7.6e-17 90.9 48 93.8
CSS0018148 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 3.2e-15 85.5 53 81.1
CSS0014341 Camellia sinensis var. sinensis HOM05D003980 ORTHO05D005301 5.1e-13 78.2 43 90.7


User provided reference genes

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