Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 0.0e+00 1464.1 722 100.0
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 0.0e+00 1245.0 725 82.9
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 0.0e+00 1186.0 698 82.4
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 0.0e+00 1182.9 723 80.1
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 0.0e+00 1082.4 722 72.9
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.0e-311 1072.0 721 71.7
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.5e-311 1071.6 726 71.9
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 4.1e-309 1064.3 725 71.2
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 9.2e-309 1063.1 725 70.6
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 3.3e-306 1054.7 721 71.4
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 5.2e-304 1047.3 732 69.9
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.2e-303 1046.2 721 69.8
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.4e-303 1044.6 721 69.6
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 3.7e-302 1041.2 721 69.5
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 8.3e-302 1040.0 720 69.7
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.4e-301 1039.3 726 70.1
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 4.1e-301 1037.7 724 70.0
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 9.2e-301 1036.6 725 69.1
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 1.2e-300 1036.2 719 70.0
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 2.1e-300 1035.4 725 69.2
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.0e-300 1033.9 721 69.1
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 4.3e-298 1027.7 725 68.6
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 2.1e-297 1025.4 788 64.8
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 2.8e-297 1025.0 724 69.2
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 8.1e-297 1023.5 727 67.4
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.1e-296 1023.1 730 69.0
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 5.2e-296 1020.8 730 67.8
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 7.6e-295 1016.9 763 65.9
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 9.9e-295 1016.5 735 67.9
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 2.7e-292 1008.4 728 67.7
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 4.6e-292 1007.7 734 67.2
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 6.0e-292 1007.3 723 67.4
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 7.8e-292 1006.9 734 66.9
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 1.0e-291 1006.5 728 67.4
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.3e-291 1006.1 767 65.2
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 5.6e-290 1000.7 721 67.3
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.1e-288 996.5 734 66.6
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 1.8e-288 995.7 721 66.2
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 5.2e-288 994.2 719 65.6
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 2.0e-287 992.3 721 65.3
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 4.4e-287 991.1 722 66.2
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.7e-284 981.9 824 64.0
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 6.0e-284 980.7 719 65.4
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 6.0e-284 980.7 722 64.8
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 1.3e-283 979.5 723 66.5
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.3e-281 973.0 721 65.3
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 2.1e-281 972.2 723 65.3
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 2.4e-280 968.8 733 64.3
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 4.9e-278 961.1 721 64.6
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 9.3e-277 956.8 721 63.9
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 1.6e-276 956.1 730 64.1
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 2.1e-276 955.7 726 64.3
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 2.1e-276 955.7 701 66.3
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 1.0e-275 953.4 723 64.7
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 1.8e-275 952.6 723 64.7
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 1.5e-274 949.5 729 64.2
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 9.6e-274 946.8 721 64.5
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 1.6e-273 946.0 729 63.8
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 6.2e-273 944.1 746 62.7
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 6.2e-273 944.1 730 63.8
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.4e-272 942.2 725 62.8
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 1.2e-271 939.9 737 63.5
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 3.4e-271 938.3 723 63.5
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 4.5e-271 937.9 731 63.6
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 1.4e-269 932.9 729 62.7
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 1.4e-269 932.9 723 65.4
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.1e-266 923.3 728 62.0
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 8.2e-265 917.1 729 61.9
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 9.3e-261 903.7 649 67.3
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 6.3e-257 891.0 724 61.5
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 9.0e-256 887.1 708 61.6
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 1.3e-254 883.2 721 61.9
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 2.2e-254 882.5 670 63.3
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.5e-250 869.8 707 61.2
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 4.1e-248 861.7 719 59.7
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 1.2e-247 860.1 632 67.6
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.6e-242 842.4 673 62.9
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 5.9e-239 831.2 731 58.8
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 3.8e-238 828.6 722 58.0
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 1.1e-237 827.0 749 57.3
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 4.4e-234 815.1 495 78.8
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 7.4e-234 814.3 609 63.4
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.2e-233 812.8 617 65.8
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.8e-232 809.7 617 64.7
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 7.2e-229 797.7 607 62.8
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 1.6e-228 796.6 605 63.1
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 2.2e-225 786.2 703 55.8
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 1.4e-224 783.5 760 55.4
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 1.8e-224 783.1 726 54.0
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 5.7e-218 761.5 456 79.6
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 9.8e-210 734.2 498 69.7
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 5.4e-208 728.4 637 57.5
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 1.4e-200 703.7 526 65.8
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 5.4e-200 701.8 616 56.0
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 6.2e-196 688.3 732 50.8
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 9.8e-194 681.0 620 56.6
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.9e-190 669.1 454 69.8
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 2.2e-169 600.1 633 54.8
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 7.8e-167 591.7 733 45.0
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 2.6e-162 576.6 412 67.7
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 9.0e-155 551.6 601 47.4
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 2.2e-153 547.0 737 41.9
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 1.9e-141 507.3 381 65.4
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 6.9e-139 498.8 343 71.1
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.6e-135 486.1 582 45.2
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 1.3e-132 478.0 427 55.3
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.0e-121 441.8 835 35.2
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 4.7e-111 406.4 542 41.9
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.3e-110 404.1 482 45.6
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 1.8e-107 394.4 289 65.1
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 7.7e-98 362.5 470 44.0
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.7e-93 346.3 188 89.9
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 5.7e-93 346.3 225 69.8
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 1.4e-83 315.1 226 68.6
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.3e-65 254.6 126 96.8
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 2.2e-60 238.0 126 93.7
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 1.3e-57 228.8 668 30.7
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 2.1e-55 221.5 316 42.4
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 3.6e-55 220.7 125 73.6
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 1.8e-54 218.4 243 46.1
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 2.4e-54 218.0 144 73.6
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.2e-50 205.7 216 54.6
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 1.6e-50 205.3 285 39.6
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 5.8e-45 186.8 169 63.9
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 1.1e-40 172.6 147 61.9
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.1e-34 151.8 114 58.8
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.6e-34 150.6 100 73.0
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 3.0e-33 147.9 103 68.9
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 3.1e-22 111.3 88 64.8
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 1.5e-21 109.0 105 51.4
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 2.1e-18 98.6 81 59.3
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 5.1e-17 94.0 82 61.0
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 1.1e-16 92.8 246 31.7
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 5.9e-13 80.5 61 59.0
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 5.0e-12 77.4 94 43.6
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 4.2e-11 74.3 44 72.7
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 9.4e-11 73.2 44 68.2
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 1.6e-10 72.4 59 57.6
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 1.8e-09 68.9 75 50.7
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 8.2e-07 60.1 71 39.4
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 1.1e-06 59.7 43 62.8
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 1.4e-06 59.3 71 39.4
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 1.8e-06 58.9 39 69.2
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 1.8e-06 58.9 71 39.4
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 2.4e-06 58.5 71 40.8
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 3.1e-06 58.2 59 45.8
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 5.3e-06 57.4 59 42.4
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 5.3e-06 57.4 59 42.4
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 5.3e-06 57.4 59 44.1
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 7.0e-06 57.0 115 32.2
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 9.1e-06 56.6 59 44.1
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 9.1e-06 56.6 59 42.4


User provided reference genes

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