Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032128 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 3.4e-35 151.0 69 100.0
CSS0011087 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.8e-29 131.3 70 88.6
CSS0044246 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 2.8e-29 131.3 70 88.6
Hma1.2p1_1143F.1_g261110 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 5.8e-27 123.6 67 85.1
Ca_01531_v3 Cicer arietinum L. HOM05D003865 ORTHO05D004466 7.6e-27 123.2 68 80.9
CiPaw.04G123400 Carya illinoinensis HOM05D003865 ORTHO05D004466 9.9e-27 122.9 67 83.6
Hma1.2p1_1143F.1_g261120 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 9.9e-27 122.9 67 85.1
Eucgr.F01087 Eucalyptus grandis HOM05D003865 ORTHO05D004466 1.3e-26 122.5 67 82.1
Phvul.005G107201 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 2.2e-26 121.7 67 82.1
PGR083G1332 Punica granatum HOM05D003865 ORTHO05D004466 2.2e-26 121.7 67 83.6
Cc00_g29860 Coffea canephora HOM05D003865 ORTHO05D004466 2.9e-26 121.3 68 80.9
Lsat_1_v5_gn_8_131501 Lactuca sativa HOM05D003865 ORTHO05D004466 2.9e-26 121.3 67 83.6
Lsat_1_v5_gn_8_131640 Lactuca sativa HOM05D003865 ORTHO05D004466 2.9e-26 121.3 67 83.6
Manes.15G084300 Manihot esculenta HOM05D003865 ORTHO05D004466 2.9e-26 121.3 67 82.1
Potri.019G104100 Populus trichocarpa HOM05D003865 ORTHO05D004466 2.9e-26 121.3 68 80.9
Potri.019G104300 Populus trichocarpa HOM05D003865 ORTHO05D004466 2.9e-26 121.3 68 80.9
Prupe.3G233100 Prunus persica HOM05D003865 ORTHO05D004466 3.8e-26 120.9 67 83.6
Solyc07g063470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 3.8e-26 120.9 67 82.1
EL10Ac9g20679 Beta vulgaris HOM05D003865 ORTHO05D004466 6.4e-26 120.2 68 79.4
CANSAT64G1248 Cannabis sativa HOM05D003865 ORTHO05D004466 6.4e-26 120.2 67 83.6
CsaV3_7G004170 Cucumis sativus L. HOM05D003865 ORTHO05D004466 6.4e-26 120.2 67 80.6
Prupe.4G187900 Prunus persica HOM05D003865 ORTHO05D004466 1.1e-25 119.4 67 80.6
Sopen07g031650 Solanum pennellii HOM05D003865 ORTHO05D004466 1.1e-25 119.4 67 80.6
CANSAT11G1994 Cannabis sativa HOM05D003865 ORTHO05D004466 1.9e-25 118.6 67 80.6
Cfa014557 Carpinus fangiana HOM05D003865 ORTHO05D004466 1.9e-25 118.6 67 80.6
Migut.H01032 Erythranthe guttata HOM05D003865 ORTHO05D004466 1.9e-25 118.6 67 79.1
Lalb_Chr22g0356421 Lupinus albus HOM05D003865 ORTHO05D004466 1.9e-25 118.6 67 77.6
Sed0016537 Sechium edule HOM05D003865 ORTHO05D004466 2.4e-25 118.2 67 79.1
CSS0037327 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 3.2e-25 117.9 67 82.1
CiPaw.03G171100 Carya illinoinensis HOM05D003865 ORTHO05D004466 3.2e-25 117.9 67 82.1
Ciclev10017406m.g Citrus clementina HOM05D003865 ORTHO05D004466 3.2e-25 117.9 67 79.1
MBI18_g32892_MAGBIO Magnolia biondii HOM05D003865 ORTHO05D004466 3.2e-25 117.9 67 80.6
MD09G1091900 Malus domestica HOM05D003865 ORTHO05D004466 3.2e-25 117.9 67 82.1
Sed0011440 Sechium edule HOM05D003865 ORTHO05D004466 3.2e-25 117.9 67 76.1
TPR.G35550 Trifolium pratense HOM05D003865 ORTHO05D004466 3.2e-25 117.9 68 80.9
Duzib248G0431 Durio zibethinus HOM05D003865 ORTHO05D004466 4.1e-25 117.5 67 79.1
Glyma.12G201800 Glycine max HOM05D003865 ORTHO05D004466 4.1e-25 117.5 67 80.6
Lalb_Chr19g0134391 Lupinus albus HOM05D003865 ORTHO05D004466 4.1e-25 117.5 67 77.6
BcaB07g33385 Brassica carinata HOM05D003865 ORTHO05D004466 5.4e-25 117.1 67 76.1
A06p01500 Brassica napus HOM05D003865 ORTHO05D004466 5.4e-25 117.1 67 76.1
BolC6t35932H Brassica oleracea HOM05D003865 ORTHO05D004466 5.4e-25 117.1 67 76.1
BraA06t23371Z Brassica rapa HOM05D003865 ORTHO05D004466 5.4e-25 117.1 67 76.1
Gohir.D02G182200 Gossypium hirsutum HOM05D003865 ORTHO05D004466 5.4e-25 117.1 67 79.1
Gorai.005G204700 Gossypium raimondii HOM05D003865 ORTHO05D004466 5.4e-25 117.1 67 79.1
Cc05_g12570 Coffea canephora HOM05D003865 ORTHO05D004466 7.1e-25 116.7 67 76.1
Eucgr.K00940 Eucalyptus grandis HOM05D003865 ORTHO05D004466 7.1e-25 116.7 67 80.6
Glyma.13G300400 Glycine max HOM05D003865 ORTHO05D004466 9.2e-25 116.3 67 79.1
BcaC08g43469 Brassica carinata HOM05D003865 ORTHO05D004466 1.2e-24 115.9 67 74.6
C06p08510 Brassica napus HOM05D003865 ORTHO05D004466 1.2e-24 115.9 67 74.6
ClCG02G017420 Citrullus lanatus HOM05D003865 ORTHO05D004466 1.2e-24 115.9 67 74.6
Duzib268G1549 Durio zibethinus HOM05D003865 ORTHO05D004466 1.2e-24 115.9 67 79.1
PGSC0003DMG400019299 Solanum tuberosum HOM05D003865 ORTHO05D004466 1.2e-24 115.9 67 79.1
HanXRQChr17g0554211 Helianthus annuus HOM05D003865 ORTHO05D004466 1.6e-24 115.5 67 82.1
Nn1g06711 Nelumbo nucifera HOM05D003865 ORTHO05D004466 1.6e-24 115.5 67 80.6
TWI18G0639 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.6e-24 115.5 68 76.5
COL.COLO4_09463 Corchorus olitorius HOM05D003865 ORTHO05D004466 2.1e-24 115.2 67 77.6
Duzib132G0908 Durio zibethinus HOM05D003865 ORTHO05D004466 2.1e-24 115.2 67 77.6
Hma1.2p1_0213F.1_g090470 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 2.1e-24 115.2 67 80.6
Sopen07g028410 Solanum pennellii HOM05D003865 ORTHO05D004466 2.1e-24 115.2 67 77.6
PGSC0003DMG400018392 Solanum tuberosum HOM05D003865 ORTHO05D004466 2.1e-24 115.2 67 77.6
Thecc.07G074300 Theobroma cacao HOM05D003865 ORTHO05D004466 2.1e-24 115.2 67 77.6
MD11G1238900 Malus domestica HOM05D003865 ORTHO05D004466 3.5e-24 114.4 67 76.1
RcHm_v2.0_Chr5g0035051 Rosa chinensis HOM05D003865 ORTHO05D004466 3.5e-24 114.4 67 76.1
GSVIVG01030567001 Vitis vinifera HOM05D003865 ORTHO05D004466 3.5e-24 114.4 67 77.6
MELO3C013523.2 Cucumis melo HOM05D003865 ORTHO05D004466 4.6e-24 114.0 67 74.6
HanXRQChr17g0559351 Helianthus annuus HOM05D003865 ORTHO05D004466 4.6e-24 114.0 68 76.5
Potri.011G124800 Populus trichocarpa HOM05D003865 ORTHO05D004466 4.6e-24 114.0 67 76.1
TWI36G0902 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 4.6e-24 114.0 67 79.1
TWI39G0307 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 4.6e-24 114.0 67 76.1
Cfa020526 Carpinus fangiana HOM05D003865 ORTHO05D004466 6.0e-24 113.6 67 79.1
Lj3g0025843 Lotus japonicus HOM05D003865 ORTHO05D004466 6.0e-24 113.6 67 77.6
Phvul.005G085500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 6.0e-24 113.6 67 79.1
Solyc07g054470.1 Solanum lycopersicum HOM05D003865 ORTHO05D004466 6.0e-24 113.6 67 76.1
CARHR043080 Cardamine hirsuta HOM05D003865 ORTHO05D004466 7.8e-24 113.2 67 71.6
Thhalv10012262m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 7.8e-24 113.2 67 71.6
Glyma.12G148300 Glycine max HOM05D003865 ORTHO05D004466 7.8e-24 113.2 67 77.6
CSS0035059 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.0e-23 112.8 67 76.1
HanXRQChr17g0559361 Helianthus annuus HOM05D003865 ORTHO05D004466 1.0e-23 112.8 68 75.0
QL08p037564 Quercus lobata HOM05D003865 ORTHO05D004466 1.0e-23 112.8 67 79.1
TWI75G0545 Tripterygium wilfordii HOM05D003865 ORTHO05D004466 1.0e-23 112.8 67 76.1
Carub.0001s4201 Capsella rubella HOM05D003865 ORTHO05D004466 1.3e-23 112.5 67 71.6
PGR142G1950 Punica granatum HOM05D003865 ORTHO05D004466 1.3e-23 112.5 67 77.6
Glyma.12G220500 Glycine max HOM05D003865 ORTHO05D004466 1.7e-23 112.1 67 79.1
HanXRQChr05g0156551 Helianthus annuus HOM05D003865 ORTHO05D004466 1.7e-23 112.1 67 74.6
Manes.12G087700 Manihot esculenta HOM05D003865 ORTHO05D004466 1.7e-23 112.1 67 74.6
THA.LOC109116854 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 1.7e-23 112.1 67 73.1
CiPaw.11G174800 Carya illinoinensis HOM05D003865 ORTHO05D004466 2.3e-23 111.7 67 76.1
Glyma.06G249600 Glycine max HOM05D003865 ORTHO05D004466 2.3e-23 111.7 67 76.1
MD03G1221400 Malus domestica HOM05D003865 ORTHO05D004466 2.3e-23 111.7 67 76.1
Migut.M00867 Erythranthe guttata HOM05D003865 ORTHO05D004466 3.0e-23 111.3 68 76.5
Gorai.009G432200 Gossypium raimondii HOM05D003865 ORTHO05D004466 3.0e-23 111.3 67 76.1
Manes.03G115200 Manihot esculenta HOM05D003865 ORTHO05D004466 3.0e-23 111.3 67 74.6
A05p33870 Brassica napus HOM05D003865 ORTHO05D004466 3.9e-23 110.9 67 73.1
Cpa.g.sc34.113 Carica papaya HOM05D003865 ORTHO05D004466 5.1e-23 110.5 68 73.5
Sc06g0009210 Simmondsia chinensis HOM05D003865 ORTHO05D004466 5.1e-23 110.5 67 76.1
AT1G52855 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 6.6e-23 110.2 67 70.1
BcaC05g28963 Brassica carinata HOM05D003865 ORTHO05D004466 6.6e-23 110.2 67 71.6
C05p51570 Brassica napus HOM05D003865 ORTHO05D004466 6.6e-23 110.2 67 71.6
BolC5t33845H Brassica oleracea HOM05D003865 ORTHO05D004466 6.6e-23 110.2 67 71.6
Potri.013G145100 Populus trichocarpa HOM05D003865 ORTHO05D004466 6.6e-23 110.2 68 77.9
TPR.G32874 Trifolium pratense HOM05D003865 ORTHO05D004466 6.6e-23 110.2 67 79.1
unitig_0.g2049 Utricularia gibba HOM05D003865 ORTHO05D004466 6.6e-23 110.2 70 72.9
BcaB06g29589 Brassica carinata HOM05D003865 ORTHO05D004466 8.6e-23 109.8 67 73.1
CSS0031855 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 8.6e-23 109.8 67 71.6
Ciclev10010786m.g Citrus clementina HOM05D003865 ORTHO05D004466 8.6e-23 109.8 67 77.6
HanXRQChr05g0156511 Helianthus annuus HOM05D003865 ORTHO05D004466 8.6e-23 109.8 67 73.1
Medtr2g090110 Medicago truncatula HOM05D003865 ORTHO05D004466 8.6e-23 109.8 68 77.9
EL10Ac4g08086 Beta vulgaris HOM05D003865 ORTHO05D004466 1.1e-22 109.4 67 73.1
BraA01t03904Z Brassica rapa HOM05D003865 ORTHO05D004466 1.1e-22 109.4 67 73.1
RcHm_v2.0_Chr2g0162101 Rosa chinensis HOM05D003865 ORTHO05D004466 1.1e-22 109.4 68 76.5
CSS0016755 Camellia sinensis var. sinensis HOM05D003865 ORTHO05D004466 1.5e-22 109.0 67 71.6
Duzib170G0518 Durio zibethinus HOM05D003865 ORTHO05D004466 1.5e-22 109.0 67 77.6
Hma1.2p1_1053F.1_g252410 Hydrangea macrophylla HOM05D003865 ORTHO05D004466 1.5e-22 109.0 67 79.1
ATR0191G001 Amborella trichopoda HOM05D003865 ORTHO05D004466 1.9e-22 108.6 67 76.1
C01p48910 Brassica napus HOM05D003865 ORTHO05D004466 1.9e-22 108.6 68 70.6
BolC1t04854H Brassica oleracea HOM05D003865 ORTHO05D004466 1.9e-22 108.6 68 70.6
MD17G1081800 Malus domestica HOM05D003865 ORTHO05D004466 1.9e-22 108.6 67 74.6
Phvul.011G148500 Phaseolus vulgaris HOM05D003865 ORTHO05D004466 1.9e-22 108.6 67 76.1
BcaC09g48519 Brassica carinata HOM05D003865 ORTHO05D004466 2.5e-22 108.2 67 71.6
VMungo1127G2113 Vigna mungo HOM05D003865 ORTHO05D004466 2.5e-22 108.2 67 76.1
Migut.O00868 Erythranthe guttata HOM05D003865 ORTHO05D004466 3.3e-22 107.8 70 72.9
PGSC0003DMG400025047 Solanum tuberosum HOM05D003865 ORTHO05D004466 4.3e-22 107.5 67 74.6
AT3G15534 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 5.6e-22 107.1 67 71.6
CARHR090600 Cardamine hirsuta HOM05D003865 ORTHO05D004466 5.6e-22 107.1 67 71.6
Glyma.13G281000 Glycine max HOM05D003865 ORTHO05D004466 5.6e-22 107.1 67 77.6
Nn1g03940 Nelumbo nucifera HOM05D003865 ORTHO05D004466 5.6e-22 107.1 67 76.1
Potri.001G405400 Populus trichocarpa HOM05D003865 ORTHO05D004466 7.3e-22 106.7 67 73.1
BcaB04g20919 Brassica carinata HOM05D003865 ORTHO05D004466 9.6e-22 106.3 67 70.1
Thhalv10021922m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.6e-21 105.5 67 70.1
Lsat_1_v5_gn_5_7081 Lactuca sativa HOM05D003865 ORTHO05D004466 1.6e-21 105.5 67 73.1
Gohir.A01G067400 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.8e-21 104.8 67 71.6
Gohir.D01G054600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 2.8e-21 104.8 67 71.6
Gorai.002G074500 Gossypium raimondii HOM05D003865 ORTHO05D004466 2.8e-21 104.8 67 71.6
Carub.0003s1527 Capsella rubella HOM05D003865 ORTHO05D004466 3.6e-21 104.4 67 71.6
Gohir.D01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.1e-20 102.8 67 71.6
Gorai.002G017300 Gossypium raimondii HOM05D003865 ORTHO05D004466 1.1e-20 102.8 67 71.6
BcaC07g41193 Brassica carinata HOM05D003865 ORTHO05D004466 1.4e-20 102.4 68 70.6
C08p41990 Brassica napus HOM05D003865 ORTHO05D004466 1.4e-20 102.4 68 70.6
BolC8t51762H Brassica oleracea HOM05D003865 ORTHO05D004466 1.4e-20 102.4 68 70.6
Psat2g056680 Pisum sativum HOM05D003865 ORTHO05D004466 1.4e-20 102.4 67 73.1
Gohir.A01G015600 Gossypium hirsutum HOM05D003865 ORTHO05D004466 1.8e-20 102.1 67 70.1
AL3G54020 Arabidopsis lyrata HOM05D003865 ORTHO05D004466 3.1e-20 101.3 68 69.1
BcaB08g34942 Brassica carinata HOM05D003865 ORTHO05D004466 3.1e-20 101.3 68 69.1
BraA09t41256Z Brassica rapa HOM05D003865 ORTHO05D004466 3.1e-20 101.3 68 69.1
Lsat_1_v5_gn_9_85200 Lactuca sativa HOM05D003865 ORTHO05D004466 3.1e-20 101.3 67 71.6
Sp3g34080 Schrenkiella parvula HOM05D003865 ORTHO05D004466 3.1e-20 101.3 68 69.1
unitig_899.g15557 Utricularia gibba HOM05D003865 ORTHO05D004466 3.1e-20 101.3 67 67.2
BcaC06g36774 Brassica carinata HOM05D003865 ORTHO05D004466 4.0e-20 100.9 68 69.1
BolC7t40459H Brassica oleracea HOM05D003865 ORTHO05D004466 4.0e-20 100.9 68 69.1
Aa31LG8G17640 Aethionema arabicum HOM05D003865 ORTHO05D004466 5.2e-20 100.5 68 64.7
CARHR111560 Cardamine hirsuta HOM05D003865 ORTHO05D004466 6.9e-20 100.1 68 67.6
BraA05t22209Z Brassica rapa HOM05D003865 ORTHO05D004466 8.9e-20 99.8 68 66.2
Sc03g0009670 Simmondsia chinensis HOM05D003865 ORTHO05D004466 8.9e-20 99.8 67 68.7
Carub.0003s3548 Capsella rubella HOM05D003865 ORTHO05D004466 1.2e-19 99.4 68 67.6
AT2G20835 Arabidopsis thaliana HOM05D003865 ORTHO05D004466 1.5e-19 99.0 68 67.6
Thhalv10002196m.g Eutrema salsugineum HOM05D003865 ORTHO05D004466 1.5e-19 99.0 68 67.6
HanXRQChr08g0235631 Helianthus annuus HOM05D003865 ORTHO05D004466 2.6e-19 98.2 67 67.2
Gohir.A03G159100 Gossypium hirsutum HOM05D003865 ORTHO05D004466 9.9e-19 96.3 56 78.6
Sp1g39430 Schrenkiella parvula HOM05D003865 ORTHO05D004466 1.3e-18 95.9 59 69.5
MELO3C016544.2 Cucumis melo HOM05D003865 ORTHO05D004466 2.2e-18 95.1 67 62.7
Actinidia12448 Actinidia chinensis HOM05D003865 ORTHO05D004466 4.9e-18 94.0 65 70.8
Os07g0564200 Oryza sativa ssp. japonica HOM05D003865 ORTHO05D004466 6.4e-18 93.6 68 67.6
Zm00001eb324400 Zea mays HOM05D003865 ORTHO05D004466 1.1e-17 92.8 68 66.2
Peaxi162Scf00007g02826 Petunia axillaris HOM05D003865 ORTHO05D004466 1.4e-17 92.4 56 76.8
DCAR_009979 Daucus carota HOM05D003865 ORTHO05D004466 3.2e-17 91.3 63 66.7
Manes.13G150400 Manihot esculenta HOM05D003865 ORTHO05D004466 7.1e-17 90.1 48 87.5
THA.LOC109117138 Tarenaya hassleriana HOM05D003865 ORTHO05D004466 7.1e-17 90.1 68 61.8
A09p58700 Brassica napus HOM05D003865 ORTHO05D004466 1.0e-15 86.3 59 67.8
Sed0025956 Sechium edule HOM05D003865 ORTHO05D004466 3.0e-15 84.7 67 58.2
CsaV3_3G006060 Cucumis sativus L. HOM05D003865 ORTHO05D004466 1.1e-14 82.8 58 62.1
GSVIVG01014413001 Vitis vinifera HOM05D003865 ORTHO05D004466 3.6e-13 77.8 43 86.0
DCAR_013078 Daucus carota HOM05D003865 ORTHO05D004466 1.2e-11 72.8 50 68.0
Oeu058398.1 Olea europaea HOM05D003865 ORTHO05D004466 1.5e-11 72.4 41 85.4
FAN21G1589 Fragaria x ananassa HOM05D003865 ORTHO05D004466 1.1e-09 66.2 41 75.6
Mapoly0067s0090 Marchantia polymorpha HOM05D003865 ORTHO05D004466 3.2e-09 64.7 64 45.3
Gohir.D05G360466 Gossypium hirsutum HOM05D003865 ORTHO05D004466 4.6e-08 60.8 41 70.7
C07p00070 Brassica napus HOM05D028728 ORTHO05D033255 1.8e-07 58.9 38 68.4


User provided reference genes

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