Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032119 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 8.1e-70 266.9 132 100.0
CSS0022165 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 4.3e-47 191.4 141 72.3
CSS0043406 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 8.2e-46 187.2 141 70.2
Dinv11584 Davidia involucrata HOM05D001170 ORTHO05D002759 1.4e-45 186.4 146 69.2
Dinv30210 Davidia involucrata HOM05D001170 ORTHO05D002759 1.2e-44 183.3 146 69.2
Actinidia28998 Actinidia chinensis HOM05D001170 ORTHO05D002759 1.0e-43 180.3 141 68.1
TAR383G0630 Trochodendron aralioides HOM05D001170 ORTHO05D002759 2.2e-43 179.1 140 67.9
CiPaw.01G244000 Carya illinoinensis HOM05D001170 ORTHO05D002759 3.2e-42 175.3 146 63.7
Haze_03014 Corylus avellana HOM05D001170 ORTHO05D002759 1.6e-41 172.9 146 61.6
Haze_03021 Corylus avellana HOM05D001170 ORTHO05D002759 1.6e-41 172.9 146 61.6
Manes.04G117000 Manihot esculenta HOM05D001170 ORTHO05D002759 1.6e-41 172.9 148 62.2
Hma1.2p1_0515F.1_g170270 Hydrangea macrophylla HOM05D001170 ORTHO05D002759 2.1e-41 172.6 160 60.0
Prupe.3G079000 Prunus persica HOM05D001170 ORTHO05D002759 4.6e-41 171.4 141 64.5
TAR636G1119 Trochodendron aralioides HOM05D001170 ORTHO05D002759 6.0e-41 171.0 141 63.1
CSS0016276 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 7.9e-41 170.6 96 89.6
CSS0029114 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 2.3e-40 169.1 140 67.1
GSVIVG01017244001 Vitis vinifera HOM05D001170 ORTHO05D002759 2.3e-40 169.1 145 62.8
Cfa010927 Carpinus fangiana HOM05D001170 ORTHO05D002759 3.9e-40 168.3 146 60.3
QL07p015408 Quercus lobata HOM05D001170 ORTHO05D002759 8.7e-40 167.2 146 58.9
CSS0022469 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 9.7e-39 163.7 151 61.6
PGR102G1290 Punica granatum HOM05D001170 ORTHO05D002759 1.6e-38 162.9 146 59.6
Ciclev10026629m.g Citrus clementina HOM05D001170 ORTHO05D002759 6.3e-38 161.0 146 58.2
Manes.11G052500 Manihot esculenta HOM05D001170 ORTHO05D002759 6.3e-38 161.0 132 64.4
Prupe.8G067300 Prunus persica HOM05D001170 ORTHO05D002759 8.2e-38 160.6 144 59.0
RcHm_v2.0_Chr2g0136741 Rosa chinensis HOM05D001170 ORTHO05D002759 8.2e-38 160.6 146 61.0
COL.COLO4_12888 Corchorus olitorius HOM05D001170 ORTHO05D002759 1.1e-37 160.2 146 56.8
MELO3C017902.2 Cucumis melo HOM05D001170 ORTHO05D002759 1.1e-37 160.2 155 58.1
Gohir.A10G076500 Gossypium hirsutum HOM05D001170 ORTHO05D002759 1.1e-37 160.2 144 58.3
Solyc06g067960.3 Solanum lycopersicum HOM05D001170 ORTHO05D002759 1.4e-37 159.8 146 59.6
Sopen06g025240 Solanum pennellii HOM05D001170 ORTHO05D002759 1.4e-37 159.8 146 59.6
Thecc.06G074000 Theobroma cacao HOM05D001170 ORTHO05D002759 1.4e-37 159.8 154 57.1
vmacro15570 Vaccinium macrocarpon HOM05D001170 ORTHO05D002759 1.4e-37 159.8 191 49.2
Nitab4.5_0000620g0090 Nicotiana tabacum HOM05D001170 ORTHO05D002759 2.4e-37 159.1 138 62.3
PSO210G6149 Papaver somniferum HOM05D001170 ORTHO05D002759 2.4e-37 159.1 139 61.9
CsaV3_4G001380 Cucumis sativus L. HOM05D001170 ORTHO05D002759 4.1e-37 158.3 155 56.8
Gorai.011G080700 Gossypium raimondii HOM05D001170 ORTHO05D002759 4.1e-37 158.3 144 58.3
Sed0018385 Sechium edule HOM05D001170 ORTHO05D002759 4.1e-37 158.3 154 57.1
MSTRG.334 Avicennia marina HOM05D001170 ORTHO05D002759 6.9e-37 157.5 139 61.9
Duzib192G0175 Durio zibethinus HOM05D001170 ORTHO05D002759 9.0e-37 157.1 146 56.8
ClCG10G010110 Citrullus lanatus HOM05D001170 ORTHO05D002759 1.2e-36 156.8 134 61.9
HanXRQChr16g0504211 Helianthus annuus HOM05D001170 ORTHO05D002759 1.2e-36 156.8 147 57.1
Peaxi162Scf00207g00075 Petunia axillaris HOM05D000347 ORTHO05D002759 1.5e-36 156.4 146 58.2
Psat5g300480 Pisum sativum HOM05D001170 ORTHO05D002759 1.5e-36 156.4 145 59.3
PGSC0003DMG401028515 Solanum tuberosum HOM05D001170 ORTHO05D002759 1.5e-36 156.4 146 58.2
HanXRQChr10g0304481 Helianthus annuus HOM05D001170 ORTHO05D002759 2.0e-36 156.0 139 59.7
TWI18G1279 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 2.0e-36 156.0 143 57.3
Gohir.D10G074800 Gossypium hirsutum HOM05D001170 ORTHO05D002759 2.6e-36 155.6 144 57.6
DCAR_021328 Daucus carota HOM05D001170 ORTHO05D002759 4.5e-36 154.8 133 60.2
TWI12G0603 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 4.5e-36 154.8 136 60.3
ECA234G3104 Erigeron canadensis HOM05D001170 ORTHO05D002759 5.9e-36 154.5 137 59.1
FvH4_6g30390 Fragaria vesca HOM05D001170 ORTHO05D002759 5.9e-36 154.5 141 61.0
FAN09G3438 Fragaria x ananassa HOM05D001170 ORTHO05D002759 5.9e-36 154.5 141 61.0
FAN14G1569 Fragaria x ananassa HOM05D001170 ORTHO05D002759 5.9e-36 154.5 141 61.0
TPR.G37160 Trifolium pratense HOM05D001170 ORTHO05D002759 5.9e-36 154.5 132 62.1
CAN.G395.44 Capsicum annuum HOM05D001170 ORTHO05D002759 1.3e-35 153.3 131 62.6
Glyma.13G363100 Glycine max HOM05D001170 ORTHO05D002759 1.3e-35 153.3 134 59.0
Lalb_Chr22g0351021 Lupinus albus HOM05D001170 ORTHO05D002759 1.3e-35 153.3 143 58.7
MD17G1204000 Malus domestica HOM05D001170 ORTHO05D002759 1.7e-35 152.9 144 58.3
PSO407G0198 Papaver somniferum HOM05D001170 ORTHO05D002759 1.7e-35 152.9 140 60.0
Eucgr.D00992 Eucalyptus grandis HOM05D001170 ORTHO05D002759 2.2e-35 152.5 143 55.9
PSO170G1001 Papaver somniferum HOM05D001170 ORTHO05D002759 2.2e-35 152.5 140 60.0
MBI01_g11878_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D002759 2.9e-35 152.1 146 56.8
FAN02G4334 Fragaria x ananassa HOM05D001170 ORTHO05D002759 3.8e-35 151.8 141 60.3
Cc04_g03980 Coffea canephora HOM05D001170 ORTHO05D002759 5.0e-35 151.4 137 60.6
Ca_01086_v3 Cicer arietinum L. HOM05D001170 ORTHO05D002759 6.5e-35 151.0 142 57.0
CANSAT64G0395 Cannabis sativa HOM05D001170 ORTHO05D002759 8.5e-35 150.6 154 56.5
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 8.5e-35 150.6 137 60.6
Lj5A68T68 Lonicera japonica HOM05D001170 ORTHO05D002759 1.1e-34 150.2 132 61.4
SalBow5G2628 Salvia bowleyana HOM05D001170 ORTHO05D002759 2.5e-34 149.1 136 60.3
Migut.B01277 Erythranthe guttata HOM05D001170 ORTHO05D002759 3.2e-34 148.7 140 58.6
Rhsim02G0062300 Rhododendron simsii HOM05D001170 ORTHO05D002759 3.2e-34 148.7 96 74.0
Lsat_1_v5_gn_1_37260 Lactuca sativa HOM05D001170 ORTHO05D002759 7.2e-34 147.5 129 60.5
THA.LOC104818039 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 7.2e-34 147.5 155 53.5
Glyma.08G209900 Glycine max HOM05D001170 ORTHO05D002759 2.1e-33 146.0 130 58.5
Lj3g0006687 Lotus japonicus HOM05D001170 ORTHO05D002759 2.7e-33 145.6 146 56.2
Atru.chr1.3105 Acer truncatum HOM05D001170 ORTHO05D002759 3.6e-33 145.2 98 71.4
Cc05_g02070 Coffea canephora HOM05D001170 ORTHO05D002759 3.6e-33 145.2 147 59.2
MBI04_g29831_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D009038 3.6e-33 145.2 138 56.5
THA.LOC104815538 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 3.6e-33 145.2 141 54.6
Medtr2g103130 Medicago truncatula HOM05D001170 ORTHO05D002759 4.6e-33 144.8 145 52.4
Nn7g37528 Nelumbo nucifera HOM05D001170 ORTHO05D002759 6.1e-33 144.4 140 57.9
VMungo0331G1315 Vigna mungo HOM05D001170 ORTHO05D002759 6.1e-33 144.4 130 60.0
EL10Ac1g01218 Beta vulgaris HOM05D001170 ORTHO05D002759 7.9e-33 144.1 144 54.9
Eucgr.D00987 Eucalyptus grandis HOM05D001170 ORTHO05D002759 2.3e-32 142.5 133 57.1
AUR62027755 Chenopodium quinoa HOM05D001170 ORTHO05D002759 3.0e-32 142.1 146 54.8
Lsat_1_v5_gn_6_117141 Lactuca sativa HOM05D001170 ORTHO05D002759 3.9e-32 141.7 132 57.6
SGA_v2.0_scaffold39G15188 Striga asiatica HOM05D001170 ORTHO05D002759 3.9e-32 141.7 139 54.7
AUR62038520 Chenopodium quinoa HOM05D001170 ORTHO05D002759 8.7e-32 140.6 143 55.2
Glyma.07G032600 Glycine max HOM05D001170 ORTHO05D002759 8.7e-32 140.6 130 58.5
A05p33760 Brassica napus HOM05D001170 ORTHO05D002759 1.5e-31 139.8 148 53.4
TWI12G0482 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 1.5e-31 139.8 138 54.3
Oeu033463.1 Olea europaea HOM05D001170 ORTHO05D002759 1.9e-31 139.4 101 70.3
Carub.0003s1541 Capsella rubella HOM05D001170 ORTHO05D002759 2.5e-31 139.0 148 50.7
Lj3g0003704 Lotus japonicus HOM05D001170 ORTHO05D002759 3.3e-31 138.7 145 53.8
BraA05t22199Z Brassica rapa HOM05D001170 ORTHO05D002759 5.7e-31 137.9 148 52.7
Phvul.010G153500 Phaseolus vulgaris HOM05D001170 ORTHO05D002759 7.4e-31 137.5 131 56.5
Thhalv10021647m.g Eutrema salsugineum HOM05D001170 ORTHO05D002759 1.3e-30 136.7 148 52.7
Aqoxy1G03999 Aquilegia oxysepala HOM05D001170 ORTHO05D002759 2.8e-30 135.6 141 51.8
BcaC09g48547 Brassica carinata HOM05D001170 ORTHO05D002759 3.7e-30 135.2 145 52.4
BolC1t04829H Brassica oleracea HOM05D001170 ORTHO05D002759 3.7e-30 135.2 145 52.4
BraA01t03893Z Brassica rapa HOM05D001170 ORTHO05D002759 4.8e-30 134.8 134 54.5
ECA246G2008 Erigeron canadensis HOM05D001170 ORTHO05D002759 6.3e-30 134.4 145 52.4
Aqoxy1G02463 Aquilegia oxysepala HOM05D001170 ORTHO05D002759 1.1e-29 133.7 141 51.1
CDE01G0177 Ceratophyllum demersum HOM05D001170 ORTHO05D002759 1.1e-29 133.7 131 56.5
Potri.003G060600 Populus trichocarpa HOM05D001170 ORTHO05D002759 1.1e-29 133.7 146 47.9
A01p38430 Brassica napus HOM05D001170 ORTHO05D002759 1.4e-29 133.3 134 53.7
C01p48740 Brassica napus HOM05D001170 ORTHO05D002759 1.4e-29 133.3 144 52.1
CSS0038997 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 1.4e-29 133.3 92 75.0
AL3G28320 Arabidopsis lyrata HOM05D001170 ORTHO05D002759 2.4e-29 132.5 148 50.0
BcaB04g20909 Brassica carinata HOM05D001170 ORTHO05D002759 4.1e-29 131.7 149 50.3
C05p50770 Brassica napus HOM05D001170 ORTHO05D002759 4.1e-29 131.7 144 52.1
AT3G15660 Arabidopsis thaliana HOM05D001170 ORTHO05D002759 5.3e-29 131.3 148 50.0
Sp3g13960 Schrenkiella parvula HOM05D001170 ORTHO05D002759 9.1e-29 130.6 149 50.3
CARHR090750 Cardamine hirsuta HOM05D001170 ORTHO05D002759 1.2e-28 130.2 133 53.4
Ah.05g170000 Amaranthus hybridus HOM05D001170 ORTHO05D002759 2.0e-28 129.4 102 62.7
Aa31LG8G2860 Aethionema arabicum HOM05D001170 ORTHO05D002759 4.5e-28 128.3 147 51.7
SHI32413 Sapria himalayana HOM05D001170 ORTHO05D002759 7.7e-28 127.5 139 49.6
unitig_26.g9275 Utricularia gibba HOM05D001170 ORTHO05D002759 5.0e-27 124.8 102 57.8
CSS0045002 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 6.5e-27 124.4 81 74.1
HPP92_006344 Vanilla planifolia HOM05D001170 ORTHO05D002759 7.2e-26 120.9 127 48.8
Nitab4.5_0003512g0090 Nicotiana tabacum HOM05D001170 ORTHO05D002759 2.3e-24 115.9 146 49.3
Nn3g19222 Nelumbo nucifera HOM05D002802 ORTHO05D003166 8.8e-24 114.0 87 69.0
FAN05G3026 Fragaria x ananassa HOM05D001170 ORTHO05D002759 4.4e-23 111.7 238 36.1
Os01g0530400 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D002759 2.2e-22 109.4 131 48.1
Sc09g0002660 Simmondsia chinensis HOM05D001170 ORTHO05D002759 1.4e-21 106.7 82 61.0
Zm00001eb336840 Zea mays HOM05D001170 ORTHO05D002759 1.4e-21 106.7 138 45.7
arahy.Tifrunner.gnm1.ann1.18IZSC Arachis hypogaea HOM05D001170 ORTHO05D002759 4.1e-21 105.1 153 43.8
arahy.Tifrunner.gnm1.ann1.5F4UJS Arachis hypogaea HOM05D001170 ORTHO05D002759 4.1e-21 105.1 153 43.8
Os01g0174900 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D002759 2.6e-20 102.4 137 44.5
Mapoly0037s0022 Marchantia polymorpha HOM05D001170 ORTHO05D002759 1.9e-18 96.3 126 38.1
Cpa.g.sc10.223 Carica papaya HOM05D001170 ORTHO05D002759 7.2e-18 94.4 97 55.7
SMO340G0324 Selaginella moellendorffii HOM05D001170 ORTHO05D002759 1.2e-17 93.6 118 39.8
Pp3c26_14030 Physcomitrium patens HOM05D001170 ORTHO05D002759 6.1e-17 91.3 118 40.7
Sabra03G0034800 Salix brachista HOM05D001170 ORTHO05D002759 6.1e-17 91.3 87 51.7
ATR0767G165 Amborella trichopoda HOM05D001170 ORTHO05D002759 8.0e-17 90.9 77 59.7
Zm00001eb424600 Zea mays HOM05D001170 ORTHO05D002759 2.3e-16 89.4 137 38.0
Pp3c3_2430 Physcomitrium patens HOM05D001170 ORTHO05D002759 3.9e-16 88.6 121 38.0
AagrBONN_evm.TU.Sc2ySwM_362.1014 Anthoceros agrestis HOM05D001170 ORTHO05D002759 5.2e-16 88.2 136 36.0
ATR0724G012 Amborella trichopoda HOM05D001170 ORTHO05D002759 1.7e-11 73.2 77 46.8
Zm00001eb319160 Zea mays HOM05D001170 ORTHO05D002759 2.9e-11 72.4 84 44.0
MCO03G072 Micromonas commoda HOM05D001170 ORTHO05D002759 4.7e-09 65.1 94 36.2
ECA248G2451 Erigeron canadensis HOM05D001170 ORTHO05D002666 1.0e-08 63.9 55 60.0
SMO347G0493 Selaginella moellendorffii HOM05D001170 ORTHO05D002759 1.0e-08 63.9 92 38.0
PGR004G2504 Punica granatum HOM05D001170 ORTHO05D006602 1.2e-07 60.5 95 35.8
BcaC09g51498 Brassica carinata HOM05D001170 ORTHO05D006602 2.0e-07 59.7 92 38.0
C03p36500 Brassica napus HOM05D001170 ORTHO05D006602 2.0e-07 59.7 92 38.0
BolC3t15963H Brassica oleracea HOM05D001170 ORTHO05D006602 2.0e-07 59.7 92 38.0
Cre07.g325600 Chlamydomonas reinhardtii HOM05D001170 ORTHO05D002759 2.0e-07 59.7 123 28.5
AL6G48460 Arabidopsis lyrata HOM05D001170 ORTHO05D006602 5.7e-07 58.2 90 36.7
AT4G04950 Arabidopsis thaliana HOM05D001170 ORTHO05D006602 5.7e-07 58.2 87 36.8
CDE04G1642 Ceratophyllum demersum HOM05D001170 ORTHO05D006602 7.5e-07 57.8 112 33.9
Sc07g0003420 Simmondsia chinensis HOM05D001170 ORTHO05D002759 7.5e-07 57.8 90 35.6
VMungo0251G3057 Vigna mungo HOM05D001170 ORTHO05D006602 7.5e-07 57.8 102 33.3
CsaV3_6G050090 Cucumis sativus L. HOM05D001170 ORTHO05D006602 9.7e-07 57.4 91 35.2
Zm00001eb105530 Zea mays HOM05D001170 ORTHO05D006602 9.7e-07 57.4 91 30.8
ClCG01G022920 Citrullus lanatus HOM05D001170 ORTHO05D006602 1.3e-06 57.0 91 34.1
arahy.Tifrunner.gnm1.ann1.BU1MR9 Arachis hypogaea HOM05D001170 ORTHO05D002759 1.7e-06 56.6 105 35.2
MELO3C007287.2 Cucumis melo HOM05D001170 ORTHO05D006602 1.7e-06 56.6 91 34.1
Zm00001eb103590 Zea mays HOM05D001170 ORTHO05D006602 1.7e-06 56.6 86 32.6
Zm00001eb240990 Zea mays HOM05D001170 ORTHO05D006602 1.7e-06 56.6 91 30.8
EL10Ac8g20369 Beta vulgaris HOM05D001170 ORTHO05D006602 2.2e-06 56.2 127 29.1
A03p30250 Brassica napus HOM05D001170 ORTHO05D006602 2.2e-06 56.2 88 37.5
BraA03t12209Z Brassica rapa HOM05D001170 ORTHO05D006602 2.2e-06 56.2 88 37.5
Sp6g04010 Schrenkiella parvula HOM05D001170 ORTHO05D006602 2.2e-06 56.2 87 36.8
TPR.G12036 Trifolium pratense HOM05D001170 ORTHO05D006602 2.2e-06 56.2 91 35.2
Carub.0006s3288 Capsella rubella HOM05D001170 ORTHO05D006602 2.8e-06 55.8 87 36.8
CARHR252590 Cardamine hirsuta HOM05D001170 ORTHO05D006602 2.8e-06 55.8 87 35.6
Hund21229 Selenicereus undatus HOM05D001170 ORTHO05D006602 2.8e-06 55.8 134 29.9
Zm00001eb044380 Zea mays HOM05D001170 ORTHO05D006602 2.8e-06 55.8 91 29.7
Zm00001eb220880 Zea mays HOM05D001170 ORTHO05D006602 2.8e-06 55.8 91 29.7
Aqoxy4G00926 Aquilegia oxysepala HOM05D001170 ORTHO05D006602 3.7e-06 55.5 128 30.5
arahy.Tifrunner.gnm1.ann1.25IQBC Arachis hypogaea HOM05D001170 ORTHO05D002759 3.7e-06 55.5 105 34.3
Duzib128G0294 Durio zibethinus HOM05D001170 ORTHO05D002759 4.8e-06 55.1 90 33.3
MD05G1313900 Malus domestica HOM05D001170 ORTHO05D006602 4.8e-06 55.1 91 33.0
Phvul.008G055800 Phaseolus vulgaris HOM05D001170 ORTHO05D002759 4.8e-06 55.1 96 31.2
COL.COLO4_06601 Corchorus olitorius HOM05D001170 ORTHO05D002759 6.3e-06 54.7 90 33.3
Lj1g0025103 Lotus japonicus HOM05D001170 ORTHO05D002759 6.3e-06 54.7 96 33.3
Lalb_Chr05g0218421 Lupinus albus HOM05D001170 ORTHO05D006602 6.3e-06 54.7 86 34.9
Pp3c10_4370 Physcomitrium patens HOM05D001170 ORTHO05D006602 6.3e-06 54.7 111 33.3
Sed0020397 Sechium edule HOM05D001170 ORTHO05D006602 6.3e-06 54.7 91 31.9
FvH4_3g09370 Fragaria vesca HOM05D001170 ORTHO05D006602 8.2e-06 54.3 91 30.8
FAN21G0582 Fragaria x ananassa HOM05D001170 ORTHO05D006602 8.2e-06 54.3 91 31.9
RcHm_v2.0_Chr5g0008221 Rosa chinensis HOM05D001170 ORTHO05D006602 8.2e-06 54.3 91 31.9
SalBow4G1428 Salvia bowleyana HOM05D001170 ORTHO05D002759 8.2e-06 54.3 108 32.4


User provided reference genes

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