Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1895.2 947 100.0
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 0.0e+00 1466.8 946 78.1
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1446.4 946 78.2
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1382.5 937 74.9
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 0.0e+00 1371.7 937 74.9
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 0.0e+00 1283.9 939 70.9
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 0.0e+00 1283.1 938 69.4
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 0.0e+00 1268.4 949 69.2
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 0.0e+00 1268.4 961 68.3
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 0.0e+00 1243.0 928 69.2
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 0.0e+00 1228.0 940 68.1
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 0.0e+00 1226.1 935 68.1
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 0.0e+00 1223.0 932 67.5
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1221.1 954 67.2
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1220.3 963 67.5
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 0.0e+00 1218.4 923 69.7
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 0.0e+00 1217.2 930 67.1
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1215.7 927 68.8
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 0.0e+00 1213.0 932 67.2
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 0.0e+00 1211.8 965 66.5
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1206.4 940 67.0
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 0.0e+00 1206.4 947 65.2
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 0.0e+00 1204.1 975 65.0
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 0.0e+00 1203.7 930 66.5
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1202.6 939 67.1
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 0.0e+00 1201.8 924 66.7
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1200.7 939 66.2
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1199.1 931 66.3
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 0.0e+00 1197.2 930 67.5
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 0.0e+00 1195.6 930 67.4
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 0.0e+00 1194.5 930 65.8
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1192.9 931 66.1
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1185.2 935 66.1
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1182.2 1000 63.7
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 0.0e+00 1181.4 938 65.2
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 0.0e+00 1179.9 929 65.8
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 0.0e+00 1177.9 927 66.3
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 0.0e+00 1169.8 936 66.3
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 0.0e+00 1168.7 926 66.2
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 0.0e+00 1168.3 930 65.4
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1166.4 925 65.7
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1165.2 1003 61.5
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 0.0e+00 1164.8 920 64.6
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 0.0e+00 1164.4 924 65.4
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1162.1 939 65.6
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1159.4 936 65.4
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 0.0e+00 1158.3 1035 61.9
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1156.4 1008 61.6
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 0.0e+00 1154.8 1020 60.3
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 0.0e+00 1154.4 983 63.5
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1152.9 1006 61.4
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 0.0e+00 1152.5 1008 61.5
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 0.0e+00 1148.7 917 65.0
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 0.0e+00 1147.9 943 64.8
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 0.0e+00 1147.1 927 64.8
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 0.0e+00 1146.7 950 63.1
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 0.0e+00 1146.7 938 63.6
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 0.0e+00 1144.0 930 63.1
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 0.0e+00 1142.5 1052 59.1
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 0.0e+00 1135.6 980 61.0
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 0.0e+00 1135.2 926 65.4
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1134.8 936 63.1
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 0.0e+00 1131.3 919 64.0
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 0.0e+00 1118.2 915 63.7
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 0.0e+00 1118.2 922 63.1
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 0.0e+00 1117.8 934 62.0
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 0.0e+00 1117.1 927 61.8
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 0.0e+00 1111.3 871 67.0
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 0.0e+00 1110.5 1009 60.3
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 0.0e+00 1109.7 927 61.7
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 957 61.4
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 979 60.3
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1105.5 943 61.0
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 0.0e+00 1103.2 931 61.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 0.0e+00 1102.4 927 61.5
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 931 61.1
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1102.0 935 60.9
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 0.0e+00 1099.7 928 62.7
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 0.0e+00 1099.0 939 61.2
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 0.0e+00 1096.6 968 60.6
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1092.0 928 61.3
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 0.0e+00 1091.6 983 58.8
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1091.6 928 61.2
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1091.3 943 60.4
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 0.0e+00 1089.7 945 62.1
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1089.3 933 60.5
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 0.0e+00 1083.6 927 59.7
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 0.0e+00 1083.2 926 59.6
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 0.0e+00 1077.8 864 64.8
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 0.0e+00 1076.6 922 60.0
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 0.0e+00 1076.6 922 60.0
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 0.0e+00 1075.5 923 61.1
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 1.3e-311 1072.8 941 62.0
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 2.2e-310 1068.9 932 60.4
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 4.9e-310 1067.8 1055 56.3
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 1.6e-308 1062.8 919 60.2
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 2.5e-306 1055.4 931 60.2
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 5.6e-306 1054.3 923 60.8
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 7.3e-306 1053.9 921 62.5
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.2e-305 1053.1 818 67.2
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 1.4e-304 1049.7 931 59.9
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 2.0e-303 1045.8 849 64.7
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 5.6e-298 1027.7 853 63.3
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 4.0e-296 1021.5 962 57.3
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 1.2e-295 1020.0 953 57.9
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 7.9e-292 1007.3 1172 51.6
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 3.0e-291 1005.4 983 58.0
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 6.7e-291 1004.2 986 56.8
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 4.3e-290 1001.5 1054 53.7
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 1.1e-288 996.9 959 56.9
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 1.3e-283 979.9 805 63.1
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 3.6e-260 902.1 914 54.6
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 8.2e-257 891.0 952 53.8
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 1.6e-252 876.7 784 58.5
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 1.0e-246 857.4 978 49.0
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 8.0e-244 847.8 675 65.9
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 3.3e-242 842.4 756 57.7
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 3.7e-241 839.0 844 52.1
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 9.1e-240 834.3 887 50.1
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.6e-228 795.8 799 57.7
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 8.0e-228 794.7 1083 43.3
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 1.0e-222 777.7 717 59.0
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 2.6e-202 709.9 637 59.7
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 2.4e-192 676.8 622 58.8
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.3e-190 670.2 670 57.0
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 1.1e-184 651.4 411 77.1
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.3e-181 639.8 712 53.2
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 2.1e-167 594.0 384 78.9
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 7.9e-167 592.0 430 72.8
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.1e-160 571.6 387 74.9
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 1.0e-145 521.9 470 62.8
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 5.0e-145 519.6 573 53.4
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.3e-126 457.6 570 48.2
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 7.0e-123 446.0 285 75.4
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 4.2e-120 436.8 295 71.5
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 3.0e-118 430.6 312 68.9
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 1.7e-113 414.8 468 50.4
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 6.1e-111 406.4 317 64.7
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 3.6e-95 354.0 346 53.5
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 3.3e-88 330.9 218 73.4
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.4e-61 241.1 139 80.6
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 7.1e-59 233.4 278 54.0
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 1.6e-55 222.2 154 71.4
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 1.7e-52 212.2 210 52.4
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 3.4e-45 188.0 149 64.4
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 3.4e-45 188.0 134 67.9
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.2e-36 158.7 160 53.1
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 4.1e-30 137.9 109 62.4
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 1.5e-29 136.0 115 60.9
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.2e-28 132.1 76 82.9
SEGI_38945 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.2e-20 105.5 86 58.1
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 2.9e-20 105.1 66 72.7
BolC1t03898H Brassica oleracea HOM05D010251 ORTHO05D005221 1.7e-15 89.4 160 37.5
Lsat_1_v5_gn_5_153621 Lactuca sativa HOM05D004101 ORTHO05D005221 2.2e-12 79.0 75 53.3
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 3.8e-12 78.2 51 68.6
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 6.5e-12 77.4 46 78.3
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 8.5e-12 77.0 82 52.4
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 5.5e-11 74.3 50 68.0
Pp3c3_10160 Physcomitrium patens HOM05D004101 ORTHO05D005221 4.7e-10 71.2 99 36.4
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 6.1e-10 70.9 91 45.1
BolC2t10203H Brassica oleracea HOM05D004101 ORTHO05D027158 2.3e-09 68.9 55 58.2
BolC2t10210H Brassica oleracea HOM05D004101 ORTHO05D027158 2.3e-09 68.9 55 58.2
A01p24750 Brassica napus HOM05D004101 ORTHO05D027158 4.0e-09 68.2 55 58.2
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 2.8e-07 62.0 33 78.8
BcaC05g27051 Brassica carinata HOM05D004101 ORTHO05D027158 3.7e-07 61.6 146 32.9
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.8e-07 61.2 62 51.6
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 8.3e-07 60.5 74 44.6


User provided reference genes

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