Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 5.1e-235 817.4 418 100.0
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 5.7e-178 627.9 415 78.8
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.3e-177 626.7 411 76.6
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 3.7e-177 625.2 396 79.5
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 7.7e-175 617.5 415 78.8
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 8.8e-171 604.0 415 74.2
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.3e-169 600.1 406 73.9
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.7e-169 599.7 408 75.0
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.1e-168 597.0 375 82.7
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.8e-168 596.3 405 76.0
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 4.1e-168 595.1 415 73.5
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.2e-167 593.6 396 75.5
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 9.5e-165 583.9 454 66.7
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 2.8e-164 582.4 363 84.8
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 3.6e-164 582.0 400 73.5
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 3.6e-164 582.0 398 74.4
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 1.0e-163 580.5 399 74.2
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 2.3e-163 579.3 409 73.6
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.9e-163 577.4 399 73.9
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 5.7e-162 574.7 418 71.5
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.5e-162 574.3 399 73.4
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.9e-161 572.4 398 71.6
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 3.7e-161 572.0 393 72.5
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 4.9e-161 571.6 420 71.7
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 2.4e-160 569.3 393 72.5
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 3.5e-159 565.5 417 70.7
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 5.9e-159 564.7 400 69.8
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.0e-158 563.9 417 70.5
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.3e-158 563.5 417 70.5
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 6.6e-158 561.2 418 72.2
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 3.3e-157 558.9 433 69.1
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 1.2e-156 557.0 399 71.4
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 5.8e-154 548.1 407 71.0
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 7.5e-154 547.7 465 61.5
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 2.9e-153 545.8 419 68.7
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 6.4e-153 544.7 398 70.9
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 7.0e-152 541.2 396 69.7
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 1.6e-151 540.0 398 69.1
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 7.8e-151 537.7 398 67.8
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 3.0e-150 535.8 397 69.5
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 1.5e-149 533.5 421 65.6
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 1.5e-149 533.5 418 67.5
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 1.5e-149 533.5 417 67.6
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 1.6e-148 530.0 417 67.1
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.1e-148 529.6 406 68.2
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 3.6e-148 528.9 420 65.2
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.4e-147 526.9 393 69.0
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 1.5e-146 523.5 407 69.5
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.5e-146 523.5 426 65.3
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 2.0e-146 523.1 410 68.0
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 8.3e-145 517.7 326 80.7
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 1.4e-144 516.9 426 64.6
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 2.4e-144 516.2 339 77.0
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 3.2e-144 515.8 399 65.4
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 2.1e-143 513.1 440 65.7
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 4.6e-143 511.9 364 71.7
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.0e-142 510.8 423 64.8
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 5.6e-141 505.0 410 65.1
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 3.6e-140 502.3 397 66.0
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 8.1e-140 501.1 410 64.6
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 1.8e-139 500.0 354 71.8
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 6.8e-139 498.0 440 59.3
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 4.9e-137 491.9 397 65.2
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 4.6e-135 485.3 397 64.0
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.7e-134 483.4 407 62.7
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 1.7e-134 483.4 406 64.0
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.0e-134 482.6 381 65.4
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.5e-133 479.6 325 75.1
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 3.3e-133 479.2 404 63.4
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 3.3e-133 479.2 420 62.6
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 7.3e-133 478.0 404 63.1
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 9.6e-133 477.6 397 63.5
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.1e-132 476.5 402 61.7
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 2.1e-132 476.5 410 63.2
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 8.1e-132 474.6 426 61.5
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 1.8e-131 473.4 397 63.2
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 2.4e-131 473.0 416 61.5
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 8.9e-131 471.1 395 62.8
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 9.9e-130 467.6 405 63.0
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 1.3e-129 467.2 399 62.2
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 2.9e-129 466.1 399 61.9
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 4.9e-129 465.3 399 61.9
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 8.4e-129 464.5 408 60.5
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.4e-128 463.8 404 61.9
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 2.4e-128 463.0 430 59.1
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 4.2e-128 462.2 356 69.1
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.1e-125 454.1 399 60.9
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 3.6e-124 449.1 346 67.9
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 6.2e-124 448.4 331 70.1
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 5.3e-123 445.3 404 60.6
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 9.9e-122 441.0 406 60.8
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 1.3e-121 440.7 396 60.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 2.9e-121 439.5 319 70.8
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 2.9e-121 439.5 408 58.3
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 1.4e-120 437.2 423 58.4
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 2.1e-119 433.3 413 59.3
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.7e-118 427.9 370 63.5
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 5.3e-115 418.7 298 71.5
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 9.0e-115 417.9 327 66.7
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 9.0e-115 417.9 291 73.9
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.2e-113 413.3 282 74.8
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 2.9e-113 412.9 401 56.9
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.6e-109 398.7 282 73.0
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 2.1e-108 396.7 334 63.2
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 7.1e-104 381.7 330 60.9
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.5e-101 374.0 328 61.0
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 4.3e-101 372.5 325 60.6
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 9.7e-101 371.3 447 50.1
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.4e-88 330.9 428 48.8
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 2.1e-79 300.4 215 70.7
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 1.2e-71 274.6 214 65.4
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 3.8e-65 253.1 322 47.5
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.4e-62 244.6 418 39.5
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 1.7e-60 237.7 411 38.7
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 4.7e-55 219.5 128 86.7
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 2.0e-53 214.2 149 77.9
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.5e-48 198.0 428 33.2
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 2.5e-48 197.2 124 79.8
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 2.3e-41 174.1 101 93.1
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 2.3e-30 137.5 104 69.2
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 3.7e-28 130.2 103 66.0
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 7.8e-26 122.5 89 69.7
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 7.8e-26 122.5 93 74.2
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 4.0e-22 110.2 106 55.7
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 3.8e-20 103.6 113 42.5
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 4.6e-18 96.7 154 40.3
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.3e-09 67.8 81 45.7
Gohir.A11G262000 Gossypium hirsutum HOM05D005892 ORTHO05D007364 4.8e-07 60.1 43 62.8


User provided reference genes

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