Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0032025 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 4.7e-35 150.6 74 100.0
CSS0002762 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 1.3e-24 115.9 74 83.8
CSS0011711 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 9.0e-18 93.2 73 68.5
Potri.017G070000 Populus trichocarpa HOM05D002383 ORTHO05D002515 8.4e-16 86.7 74 64.9
TWI36G1091 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 1.9e-15 85.5 76 65.8
Manes.15G150600 Manihot esculenta HOM05D002383 ORTHO05D002515 3.2e-15 84.7 75 64.0
Sabra17G0061800 Salix brachista HOM05D002383 ORTHO05D002515 9.3e-15 83.2 75 64.0
Hma1.2p1_2120F.1_g314410 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 1.6e-14 82.4 76 64.5
BraA04t17007Z Brassica rapa HOM05D002383 ORTHO05D002515 2.7e-14 81.6 77 61.0
FvH4_6g51230 Fragaria vesca HOM05D002383 ORTHO05D002515 3.5e-14 81.3 78 59.0
FAN02G4557 Fragaria x ananassa HOM05D002383 ORTHO05D002515 3.5e-14 81.3 78 59.0
FAN14G3744 Fragaria x ananassa HOM05D002383 ORTHO05D002515 3.5e-14 81.3 78 59.0
CARHR261560 Cardamine hirsuta HOM05D002383 ORTHO05D002515 4.6e-14 80.9 82 58.5
RcHm_v2.0_Chr2g0172811 Rosa chinensis HOM05D002383 ORTHO05D002515 4.6e-14 80.9 78 60.3
FAN05G3597 Fragaria x ananassa HOM05D002383 ORTHO05D002515 6.0e-14 80.5 78 59.0
Manes.17G112300 Manihot esculenta HOM05D002383 ORTHO05D002515 6.0e-14 80.5 76 61.8
Nitab4.5_0003318g0140 Nicotiana tabacum HOM05D002383 ORTHO05D002515 6.0e-14 80.5 74 59.5
Nitab4.5_0002468g0100 Nicotiana tabacum HOM05D002383 ORTHO05D002515 7.9e-14 80.1 74 58.1
Thecc.04G017100 Theobroma cacao HOM05D002383 ORTHO05D002515 7.9e-14 80.1 75 60.0
SalBow7G3295 Salvia bowleyana HOM05D002383 ORTHO05D002515 1.0e-13 79.7 72 61.1
A04p13490 Brassica napus HOM05D002383 ORTHO05D002515 1.3e-13 79.3 77 59.7
C04p47260 Brassica napus HOM05D002383 ORTHO05D002515 1.3e-13 79.3 77 59.7
BolC4t26325H Brassica oleracea HOM05D002383 ORTHO05D002515 1.3e-13 79.3 77 59.7
Rhsim08G0050700 Rhododendron simsii HOM05D002383 ORTHO05D002515 1.3e-13 79.3 75 57.3
TWI56G1026 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 1.3e-13 79.3 77 61.0
BcaB06g27511 Brassica carinata HOM05D002383 ORTHO05D002515 1.8e-13 79.0 77 59.7
Duzib187G0948 Durio zibethinus HOM05D002383 ORTHO05D002515 1.8e-13 79.0 74 60.8
AT5G40460 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 2.3e-13 78.6 83 56.6
Ciclev10017241m.g Citrus clementina HOM05D002383 ORTHO05D002515 2.3e-13 78.6 81 56.8
Duzib264G1049 Durio zibethinus HOM05D002383 ORTHO05D002515 2.3e-13 78.6 75 61.3
Sp7g01460 Schrenkiella parvula HOM05D002383 ORTHO05D002515 2.3e-13 78.6 77 57.1
Oeu054622.1 Olea europaea HOM05D002383 ORTHO05D002515 3.9e-13 77.8 60 63.3
Nn4g22639 Nelumbo nucifera HOM05D002383 ORTHO05D002515 5.1e-13 77.4 73 56.2
Nitab4.5_0003318g0160 Nicotiana tabacum HOM05D002383 ORTHO05D002515 5.1e-13 77.4 74 56.8
AL7G49370 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 6.7e-13 77.0 83 54.2
Migut.K01394 Erythranthe guttata HOM05D002383 ORTHO05D002515 8.7e-13 76.6 78 53.8
Prupe.3G291500 Prunus persica HOM05D002383 ORTHO05D002515 1.1e-12 76.3 76 57.9
ClCG09G019250 Citrullus lanatus HOM05D002383 ORTHO05D002515 1.5e-12 75.9 72 59.7
COL.COLO4_29113 Corchorus olitorius HOM05D002383 ORTHO05D002515 1.5e-12 75.9 75 58.7
SalBow1G3310 Salvia bowleyana HOM05D002383 ORTHO05D002515 1.5e-12 75.9 75 54.7
TAR374G1253 Trochodendron aralioides HOM05D002383 ORTHO05D002515 1.5e-12 75.9 72 56.9
MSTRG.24037 Avicennia marina HOM05D002383 ORTHO05D002515 2.5e-12 75.1 73 53.4
Thhalv10028250m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 2.5e-12 75.1 77 55.8
HanXRQChr15g0475321 Helianthus annuus HOM05D002383 ORTHO05D002515 2.5e-12 75.1 73 53.4
Nitab4.5_0008365g0010 Nicotiana tabacum HOM05D002383 ORTHO05D002515 2.5e-12 75.1 72 54.2
Lsat_1_v5_gn_4_183900 Lactuca sativa HOM05D002383 ORTHO05D002515 3.3e-12 74.7 74 55.4
Rhsim10G0017000 Rhododendron simsii HOM05D002383 ORTHO05D002515 3.3e-12 74.7 77 57.1
TAR371G1055 Trochodendron aralioides HOM05D002383 ORTHO05D002515 3.3e-12 74.7 74 54.1
Aa31LG9G1160 Aethionema arabicum HOM05D002383 ORTHO05D002515 4.3e-12 74.3 77 55.8
Oeu018138.1 Olea europaea HOM05D002383 ORTHO05D002515 4.3e-12 74.3 61 59.0
Nitab4.5_0005022g0010 Nicotiana tabacum HOM05D002383 ORTHO05D002515 5.6e-12 73.9 72 52.8
MD09G1027300 Malus domestica HOM05D002383 ORTHO05D002515 7.4e-12 73.6 77 55.8
SGA_v2.0_scaffold18G08279 Striga asiatica HOM05D002383 ORTHO05D002515 7.4e-12 73.6 74 51.4
MD17G1027200 Malus domestica HOM05D002383 ORTHO05D002515 1.3e-11 72.8 74 58.1
Oeu030979.1 Olea europaea HOM05D002383 ORTHO05D002515 1.3e-11 72.8 60 58.3
Aa31LG2G5060 Aethionema arabicum HOM05D002383 ORTHO05D002515 1.6e-11 72.4 82 52.4
CAN.G1057.2 Capsicum annuum HOM05D002383 ORTHO05D002515 1.6e-11 72.4 73 53.4
Nitab4.5_0002468g0020 Nicotiana tabacum HOM05D002383 ORTHO05D002515 1.6e-11 72.4 74 54.1
TWI12G0144 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 1.6e-11 72.4 77 57.1
Aa31LG2G5040 Aethionema arabicum HOM05D002383 ORTHO05D002515 2.1e-11 72.0 82 52.4
Aqoxy3G01198 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 2.1e-11 72.0 77 54.5
MSTRG.3147 Avicennia marina HOM05D002383 ORTHO05D002515 2.1e-11 72.0 74 55.4
Oeu036541.1 Olea europaea HOM05D002383 ORTHO05D002515 2.1e-11 72.0 72 54.2
Lsat_1_v5_gn_0_39801 Lactuca sativa HOM05D002383 ORTHO05D002515 2.8e-11 71.6 76 52.6
PGR142G2811 Punica granatum HOM05D002383 ORTHO05D002515 2.8e-11 71.6 75 54.7
Gohir.A09G029100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 3.7e-11 71.2 76 52.6
Gohir.D09G028600 Gossypium hirsutum HOM05D002383 ORTHO05D002515 3.7e-11 71.2 76 52.6
Gorai.006G033300 Gossypium raimondii HOM05D002383 ORTHO05D002515 3.7e-11 71.2 76 52.6
PGSC0003DMG400006915 Solanum tuberosum HOM05D002383 ORTHO05D002515 4.8e-11 70.9 73 53.4
Actinidia05994 Actinidia chinensis HOM05D002383 ORTHO05D002515 6.2e-11 70.5 60 58.3
BraA06t27021Z Brassica rapa HOM05D002383 ORTHO05D002515 6.2e-11 70.5 82 52.4
DCAR_021721 Daucus carota HOM05D002383 ORTHO05D002515 6.2e-11 70.5 74 55.4
THA.LOC104805371 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 8.1e-11 70.1 84 50.0
TAR622G1076 Trochodendron aralioides HOM05D002383 ORTHO05D002515 8.1e-11 70.1 75 57.3
CDE07G1210 Ceratophyllum demersum HOM05D002383 ORTHO05D002515 1.1e-10 69.7 72 50.0
CsaV3_5G027140 Cucumis sativus L. HOM05D002383 ORTHO05D002515 1.1e-10 69.7 73 56.2
Lj2g0006785 Lotus japonicus HOM05D002383 ORTHO05D002515 1.1e-10 69.7 79 55.7
THA.LOC104825323 Tarenaya hassleriana HOM05D002383 ORTHO05D002515 1.1e-10 69.7 75 53.3
Migut.H00078 Erythranthe guttata HOM05D002383 ORTHO05D002515 1.4e-10 69.3 72 55.6
TAR629G2295 Trochodendron aralioides HOM05D002383 ORTHO05D002515 1.4e-10 69.3 74 51.4
SGA_v2.0_scaffold224G42989 Striga asiatica HOM05D002383 ORTHO05D002515 1.8e-10 68.9 73 57.5
PGR083G1142 Punica granatum HOM05D002383 ORTHO05D002515 2.4e-10 68.6 83 48.2
Sed0020664 Sechium edule HOM05D002383 ORTHO05D002515 2.4e-10 68.6 76 52.6
Nn3g16740 Nelumbo nucifera HOM05D002383 ORTHO05D002515 3.1e-10 68.2 72 52.8
Sp2g16760 Schrenkiella parvula HOM05D002383 ORTHO05D002515 4.0e-10 67.8 83 48.2
Carub.0007s3513 Capsella rubella HOM05D002383 ORTHO05D002515 5.3e-10 67.4 87 50.6
MELO3C021579.2 Cucumis melo HOM05D002383 ORTHO05D002515 5.3e-10 67.4 73 53.4
BolC9t53287H Brassica oleracea HOM05D002383 ORTHO05D002515 6.9e-10 67.0 82 52.4
CANSAT64G1350 Cannabis sativa HOM05D002383 ORTHO05D002515 6.9e-10 67.0 91 46.2
Rhsim12G0112000 Rhododendron simsii HOM05D002383 ORTHO05D002515 1.2e-09 66.2 70 50.0
Solyc02g067810.1 Solanum lycopersicum HOM05D002383 ORTHO05D002515 1.2e-09 66.2 73 50.7
Thecc.02G258100 Theobroma cacao HOM05D002383 ORTHO05D002515 1.2e-09 66.2 76 52.6
CSS0031549 Camellia sinensis var. sinensis HOM05D002383 ORTHO05D002515 1.5e-09 65.9 74 51.4
Gohir.D02G159400 Gossypium hirsutum HOM05D002383 ORTHO05D002515 1.5e-09 65.9 81 50.6
Psat1g054720 Pisum sativum HOM05D002383 ORTHO05D002515 1.5e-09 65.9 75 53.3
PGSC0003DMG400012600 Solanum tuberosum HOM05D002383 ORTHO05D002515 1.5e-09 65.9 77 51.9
Atru.chr6.2391 Acer truncatum HOM05D002383 ORTHO05D002515 2.0e-09 65.5 79 50.6
Aqoxy2G01151 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 2.0e-09 65.5 75 52.0
Aqoxy5G03793 Aquilegia oxysepala HOM05D002383 ORTHO05D002515 2.0e-09 65.5 77 48.1
Sed0014920 Sechium edule HOM05D002383 ORTHO05D002515 2.0e-09 65.5 76 51.3
BcaB04g19442 Brassica carinata HOM05D002383 ORTHO05D002515 2.6e-09 65.1 82 48.8
SGA_v2.0_scaffold135G34905 Striga asiatica HOM05D002383 ORTHO05D002515 2.6e-09 65.1 73 46.6
Gohir.A03G136100 Gossypium hirsutum HOM05D002383 ORTHO05D002515 3.4e-09 64.7 80 51.2
Phvul.004G010700 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 3.4e-09 64.7 62 59.7
BcaC04g23898 Brassica carinata HOM05D002383 ORTHO05D002515 4.5e-09 64.3 82 50.0
C09p03670 Brassica napus HOM05D002383 ORTHO05D002515 4.5e-09 64.3 82 50.0
Duzib251G0524 Durio zibethinus HOM05D002383 ORTHO05D002515 4.5e-09 64.3 80 50.0
Sopen02g031160 Solanum pennellii HOM05D002383 ORTHO05D002515 5.8e-09 63.9 76 51.3
Eucgr.I01742 Eucalyptus grandis HOM05D002383 ORTHO05D002515 7.6e-09 63.5 80 52.5
Eucgr.J02239 Eucalyptus grandis HOM05D002383 ORTHO05D002515 1.0e-08 63.2 80 43.8
Sopen02g016920 Solanum pennellii HOM05D002383 ORTHO05D002515 1.0e-08 63.2 73 49.3
Duzib268G1316 Durio zibethinus HOM05D002383 ORTHO05D002515 1.3e-08 62.8 79 50.6
Sc03g0007450 Simmondsia chinensis HOM05D002383 ORTHO05D002515 1.3e-08 62.8 79 45.6
Solyc02g086450.1 Solanum lycopersicum HOM05D002383 ORTHO05D002515 1.3e-08 62.8 76 50.0
CiPaw.06G068500 Carya illinoinensis HOM05D002383 ORTHO05D002515 1.7e-08 62.4 74 51.4
PSO478G4643 Papaver somniferum HOM05D002383 ORTHO05D002515 1.7e-08 62.4 77 49.4
PSO782G0538 Papaver somniferum HOM05D002383 ORTHO05D002515 1.7e-08 62.4 77 49.4
CARHR149050 Cardamine hirsuta HOM05D002383 ORTHO05D002515 2.2e-08 62.0 82 46.3
Gohir.D04G057400 Gossypium hirsutum HOM05D002383 ORTHO05D002515 2.2e-08 62.0 75 50.7
Gorai.012G064100 Gossypium raimondii HOM05D002383 ORTHO05D002515 2.2e-08 62.0 75 50.7
AL5G17050 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 2.9e-08 61.6 77 46.8
CARHR010870 Cardamine hirsuta HOM05D002383 ORTHO05D002515 2.9e-08 61.6 72 48.6
Ca_04169_v3 Cicer arietinum L. HOM05D002383 ORTHO05D002515 2.9e-08 61.6 77 53.2
Manes.12G024000 Manihot esculenta HOM05D002383 ORTHO05D002515 2.9e-08 61.6 75 46.7
CiPaw.05G183200 Carya illinoinensis HOM05D002383 ORTHO05D002515 3.8e-08 61.2 74 52.7
VMungo0464G1703 Vigna mungo HOM05D002383 ORTHO05D002515 3.8e-08 61.2 62 58.1
BcaC06g30970 Brassica carinata HOM05D002383 ORTHO05D002515 4.9e-08 60.8 85 44.7
A09p03450 Brassica napus HOM05D002383 ORTHO05D002515 4.9e-08 60.8 76 51.3
Duzib248G0824 Durio zibethinus HOM05D002383 ORTHO05D002515 4.9e-08 60.8 78 46.2
BcaC06g33793 Brassica carinata HOM05D002383 ORTHO05D002515 6.5e-08 60.5 84 48.8
C07p36820 Brassica napus HOM05D002383 ORTHO05D002515 6.5e-08 60.5 84 48.8
BolC7t44195H Brassica oleracea HOM05D002383 ORTHO05D002515 6.5e-08 60.5 84 48.8
Gorai.005G179500 Gossypium raimondii HOM05D002383 ORTHO05D002515 6.5e-08 60.5 80 48.8
Lj4g0012935 Lotus japonicus HOM05D002383 ORTHO05D002515 6.5e-08 60.5 76 47.4
Lalb_Chr05g0216591 Lupinus albus HOM05D002383 ORTHO05D002515 6.5e-08 60.5 77 44.2
Medtr6g005250 Medicago truncatula HOM05D002383 ORTHO05D002515 6.5e-08 60.5 75 48.0
AT1G10690 Arabidopsis thaliana HOM05D002383 ORTHO05D002515 8.4e-08 60.1 78 50.0
BraA09t35983Z Brassica rapa HOM05D002383 ORTHO05D002515 8.4e-08 60.1 76 51.3
Thhalv10009472m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 8.4e-08 60.1 78 48.7
Cpa.g.sc130.83 Carica papaya HOM05D002383 ORTHO05D002515 1.1e-07 59.7 75 49.3
Hma1.2p1_0223F.1_g094100 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 1.1e-07 59.7 75 48.0
Manes.13G025600 Manihot esculenta HOM05D002383 ORTHO05D002515 1.1e-07 59.7 76 44.7
AL1G21560 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 1.4e-07 59.3 78 48.7
MSTRG.570 Avicennia marina HOM05D002383 ORTHO05D002515 1.4e-07 59.3 70 45.7
Lalb_Chr02g0160501 Lupinus albus HOM05D002383 ORTHO05D002515 1.4e-07 59.3 61 55.7
ATR1154G029 Amborella trichopoda HOM05D002383 ORTHO05D002515 2.5e-07 58.5 74 51.4
AL2G15780 Arabidopsis lyrata HOM05D002383 ORTHO05D002515 2.5e-07 58.5 77 44.2
Thhalv10005308m.g Eutrema salsugineum HOM05D002383 ORTHO05D002515 2.5e-07 58.5 82 46.3
MD13G1102700 Malus domestica HOM05D002383 ORTHO05D002515 2.5e-07 58.5 71 50.7
Migut.E00196 Erythranthe guttata HOM05D002383 ORTHO05D002515 3.2e-07 58.2 77 48.1
COL.COLO4_24249 Corchorus olitorius HOM05D002383 ORTHO05D002515 4.2e-07 57.8 84 46.4
MBI16_g23839_MAGBIO Magnolia biondii HOM05D002383 ORTHO05D002515 4.2e-07 57.8 79 44.3
SalBow8G3288 Salvia bowleyana HOM05D002383 ORTHO05D002515 4.2e-07 57.8 71 49.3
CAN.G473.10 Capsicum annuum HOM05D002383 ORTHO05D002515 7.1e-07 57.0 77 48.1
Cfa007370 Carpinus fangiana HOM05D002383 ORTHO05D002515 7.1e-07 57.0 75 49.3
Haze_14738 Corylus avellana HOM05D002383 ORTHO05D002515 7.1e-07 57.0 75 49.3
Lalb_Chr06g0175741 Lupinus albus HOM05D002383 ORTHO05D002515 7.1e-07 57.0 80 51.2
Peaxi162Scf00080g00104 Petunia axillaris HOM05D002383 ORTHO05D002515 7.1e-07 57.0 72 47.2
TPR.G14081 Trifolium pratense HOM05D002383 ORTHO05D002515 7.1e-07 57.0 73 47.9
Hma1.2p1_0160F.1_g071240 Hydrangea macrophylla HOM05D002383 ORTHO05D002515 9.3e-07 56.6 62 51.6
PSO063G0306 Papaver somniferum HOM05D002383 ORTHO05D002515 9.3e-07 56.6 77 45.5
Haze_12239 Corylus avellana HOM05D002383 ORTHO05D002515 1.2e-06 56.2 75 46.7
Oeu034180.1 Olea europaea HOM05D002383 ORTHO05D002515 1.2e-06 56.2 72 44.4
Potri.010G045200 Populus trichocarpa HOM05D002383 ORTHO05D002515 1.2e-06 56.2 80 47.5
Glyma.05G004800 Glycine max HOM05D002383 ORTHO05D002515 1.6e-06 55.8 66 51.5
Medtr8g069510 Medicago truncatula HOM05D002383 ORTHO05D002515 1.6e-06 55.8 80 40.0
Oeu017911.1 Olea europaea HOM05D002383 ORTHO05D002515 2.1e-06 55.5 72 41.7
Atru.chr11.2114 Acer truncatum HOM05D002383 ORTHO05D002515 2.7e-06 55.1 84 44.0
Atru.chr11.2129 Acer truncatum HOM05D002383 ORTHO05D002515 2.7e-06 55.1 84 44.0
MSTRG.7920 Avicennia marina HOM05D002383 ORTHO05D002515 2.7e-06 55.1 60 41.7
BcaC05g24959 Brassica carinata HOM05D002383 ORTHO05D002515 2.7e-06 55.1 75 45.3
Glyma.19G005400 Glycine max HOM05D002383 ORTHO05D002515 2.7e-06 55.1 64 53.1
Lalb_Chr09g0326151 Lupinus albus HOM05D002383 ORTHO05D002515 2.7e-06 55.1 78 44.9
Potri.008G187300 Populus trichocarpa HOM05D002383 ORTHO05D002515 2.7e-06 55.1 81 44.4
TWI18G1125 Tripterygium wilfordii HOM05D002383 ORTHO05D002515 2.7e-06 55.1 75 46.7
Oeu047973.1 Olea europaea HOM05D001335 ORTHO05D001184 3.5e-06 54.7 43 60.5
VMungo0251G0034 Vigna mungo HOM05D002383 ORTHO05D002515 3.5e-06 54.7 76 42.1
BcaC06g30972 Brassica carinata HOM05D002383 ORTHO05D002515 4.6e-06 54.3 85 42.4
Glyma.01G026600 Glycine max HOM05D002383 ORTHO05D002515 4.6e-06 54.3 76 46.1
TPR.G34660 Trifolium pratense HOM05D002383 ORTHO05D002515 4.6e-06 54.3 76 35.5
Glyma.02G038200 Glycine max HOM05D002383 ORTHO05D002515 6.0e-06 53.9 73 43.8
PSO675G5790 Papaver somniferum HOM05D002383 ORTHO05D002515 6.0e-06 53.9 65 49.2
BolC5t29651H Brassica oleracea HOM05D002383 ORTHO05D002515 7.9e-06 53.5 78 44.9
Lsat_1_v5_gn_2_91461 Lactuca sativa HOM05D002383 ORTHO05D002515 7.9e-06 53.5 72 47.2
Phvul.003G064100 Phaseolus vulgaris HOM05D002383 ORTHO05D002515 7.9e-06 53.5 76 39.5


User provided reference genes

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