Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 5.2e-249 864.0 454 100.0
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 5.2e-249 864.0 454 100.0
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 9.2e-198 693.7 456 78.1
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 1.6e-186 656.4 453 73.7
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.2e-184 650.2 455 73.6
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 2.4e-182 642.5 453 72.6
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 6.4e-167 591.3 425 70.6
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 3.7e-162 575.5 452 64.8
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.8e-156 556.6 456 64.7
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 3.9e-156 555.4 415 67.0
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 3.9e-156 555.4 416 65.6
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 1.5e-155 553.5 419 67.1
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 3.4e-152 542.3 423 65.5
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 5.9e-152 541.6 422 64.0
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 1.7e-151 540.0 419 65.2
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 1.7e-151 540.0 416 63.2
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 3.8e-151 538.9 415 64.6
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 5.0e-151 538.5 416 65.1
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 1.1e-150 537.3 415 64.6
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 2.5e-150 536.2 452 61.7
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 2.1e-149 533.1 458 60.5
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.8e-148 530.0 415 64.1
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 3.0e-148 529.3 417 63.8
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 5.1e-148 528.5 416 63.2
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 8.8e-148 527.7 453 58.5
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.1e-147 527.3 415 64.1
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 3.3e-147 525.8 416 62.7
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 2.2e-146 523.1 420 62.6
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 2.8e-146 522.7 417 61.6
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 9.1e-145 517.7 415 60.5
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 5.0e-143 511.9 417 61.4
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 4.7e-141 505.4 417 61.4
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 4.4e-139 498.8 415 59.5
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.2e-138 496.5 415 60.0
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 2.2e-138 496.5 415 59.5
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 1.1e-137 494.2 415 60.0
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 2.4e-137 493.0 414 59.7
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 2.4e-137 493.0 414 59.7
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 4.1e-137 492.3 422 59.5
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 9.1e-137 491.1 425 57.9
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 1.5e-136 490.3 416 59.4
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 2.0e-136 490.0 415 59.8
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 3.4e-136 489.2 420 60.0
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 5.9e-136 488.4 416 59.4
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 7.7e-136 488.0 418 59.6
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 1.0e-135 487.6 415 59.3
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 1.0e-135 487.6 415 59.3
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 1.0e-135 487.6 419 60.1
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 2.9e-135 486.1 416 59.4
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 3.8e-135 485.7 416 59.4
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 5.0e-135 485.3 417 59.2
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 1.9e-134 483.4 415 57.1
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 2.5e-134 483.0 416 58.2
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 7.2e-134 481.5 418 59.3
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 1.4e-132 477.2 415 56.1
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 1.8e-132 476.9 421 58.4
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 8.8e-132 474.6 419 54.9
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 8.8e-132 474.6 415 60.0
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 1.5e-131 473.8 419 58.5
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 1.1e-129 467.6 423 55.6
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 3.5e-128 462.6 415 57.3
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 5.0e-127 458.8 427 56.7
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 3.2e-126 456.1 428 56.3
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 4.4e-123 445.7 415 54.2
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 3.7e-122 442.6 419 55.1
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 3.7e-122 442.6 428 55.4
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.2e-120 437.6 352 61.9
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 2.2e-119 433.3 415 53.0
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 3.6e-117 426.0 420 50.7
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 1.0e-116 424.5 415 52.5
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 1.5e-115 420.6 410 52.9
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 3.4e-115 419.5 415 53.5
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 1.8e-113 413.7 415 52.0
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 1.3e-111 407.5 416 51.2
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 3.0e-108 396.4 415 48.4
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 1.5e-107 394.0 420 51.2
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 2.2e-106 390.2 356 57.6
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 2.2e-106 390.2 358 55.6
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 2.8e-106 389.8 414 51.4
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 8.3e-106 388.3 410 49.8
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 3.5e-104 382.9 417 49.2
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 3.5e-104 382.9 417 49.6
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 4.5e-104 382.5 418 49.5
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 5.9e-104 382.1 417 49.4
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 1.7e-103 380.6 416 48.8
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 3.8e-103 379.4 414 49.8
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 5.0e-103 379.0 417 48.7
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 2.6e-99 366.7 430 47.2
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 8.0e-93 345.1 416 47.4
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 1.1e-92 344.7 320 56.6
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 6.4e-90 335.5 436 41.7
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 1.5e-86 324.3 282 58.9
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 2.5e-78 297.0 299 51.8
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.0e-75 287.3 219 62.6
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 2.6e-75 287.0 420 40.2
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 1.0e-71 275.0 247 54.3
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 5.3e-68 262.7 217 60.8
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 1.2e-64 251.5 420 35.7
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.0e-59 234.2 185 62.2
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 2.4e-57 227.3 423 35.0
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 3.0e-47 193.7 176 51.7
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 3.5e-40 170.2 170 51.2
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 9.0e-36 155.6 176 48.3
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 7.7e-35 152.5 171 47.4
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 7.7e-35 152.5 209 43.5
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 1.6e-32 144.8 361 26.6
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 3.0e-31 140.6 420 26.7
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 5.1e-31 139.8 215 39.5
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 4.8e-29 133.3 139 49.6
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.5e-27 128.3 144 46.5
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 2.2e-26 124.4 124 50.8
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 2.2e-26 124.4 124 50.8
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 5.5e-25 119.8 132 49.2
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 1.8e-23 114.8 134 48.5
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 2.6e-22 110.9 120 45.8
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 4.1e-20 103.6 118 46.6
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 2.0e-19 101.3 89 53.9
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.4e-17 95.1 137 43.8
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 1.4e-15 88.6 113 45.1
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 2.2e-13 81.3 131 38.9
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 1.2e-11 75.5 106 35.8
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 1.6e-11 75.1 169 33.1
Mapoly0114s0020 Marchantia polymorpha HOM05D004079 ORTHO05D005437 1.0e-10 72.4 91 41.8
Pp3c6_15900 Physcomitrium patens HOM05D004127 ORTHO05D005119 1.5e-09 68.6 106 34.0
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 2.5e-09 67.8 105 34.3
arahy.Tifrunner.gnm1.ann1.L9KWYC Arachis hypogaea HOM05D006294 ORTHO05D007668 3.2e-09 67.4 78 41.0
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 5.5e-09 66.6 91 33.0
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 9.4e-09 65.9 259 23.9
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 1.2e-08 65.5 91 37.4
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.2e-08 65.5 222 24.3
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 1.6e-08 65.1 222 24.3
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 2.1e-08 64.7 101 31.7
Mapoly0036s0086 Marchantia polymorpha HOM05D004127 ORTHO05D005119 6.1e-08 63.2 105 31.4
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 8.0e-08 62.8 198 23.7
Cc01_g21590 Coffea canephora HOM05D004127 ORTHO05D005119 1.4e-07 62.0 214 24.3
Lj2C1208T0 Lonicera japonica HOM05D004127 ORTHO05D005119 1.4e-07 62.0 91 33.0
arahy.Tifrunner.gnm1.ann1.D2HFCL Arachis hypogaea HOM05D006294 ORTHO05D007668 1.8e-07 61.6 118 33.1
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 1.8e-07 61.6 146 28.1
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 1.8e-07 61.6 94 31.9
FvH4_1g27040 Fragaria vesca HOM05D004127 ORTHO05D005119 2.3e-07 61.2 150 29.3
FAN26G0855 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.3e-07 61.2 150 29.3
FAN28G2982 Fragaria x ananassa HOM05D004127 ORTHO05D005119 2.3e-07 61.2 150 29.3
CBR_g1024 Chara braunii HOM05D010152 ORTHO05D007668 3.0e-07 60.8 91 31.9
PGR083G1839 Punica granatum HOM05D004127 ORTHO05D005119 3.0e-07 60.8 94 33.0
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 3.0e-07 60.8 94 31.9
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 4.0e-07 60.5 91 34.1
Medtr7g017525 Medicago truncatula HOM05D004127 ORTHO05D005119 4.0e-07 60.5 91 34.1
Medtr7g017530 Medicago truncatula HOM05D004127 ORTHO05D005119 4.0e-07 60.5 91 34.1
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 4.0e-07 60.5 105 33.3
SMO271G0164 Selaginella moellendorffii HOM05D004079 ORTHO05D005437 4.0e-07 60.5 112 33.0
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 4.0e-07 60.5 238 20.6
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 5.2e-07 60.1 214 23.4
CSS0010117 Camellia sinensis var. sinensis HOM05D004127 ORTHO05D005119 6.8e-07 59.7 91 31.9
Ca_06960_v3 Cicer arietinum L. HOM05D004127 ORTHO05D005119 6.8e-07 59.7 91 33.0
FAN23G1564 Fragaria x ananassa HOM05D004127 ORTHO05D005119 6.8e-07 59.7 150 28.7
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 6.8e-07 59.7 91 33.0
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 6.8e-07 59.7 91 31.9
THA.LOC104809612 Tarenaya hassleriana HOM05D004127 ORTHO05D005119 6.8e-07 59.7 150 28.7
Dinv33130 Davidia involucrata HOM05D004127 ORTHO05D005119 8.8e-07 59.3 214 23.4
FAN19G1378 Fragaria x ananassa HOM05D004127 ORTHO05D005119 8.8e-07 59.3 149 28.9
Nn3g21732 Nelumbo nucifera HOM05D004127 ORTHO05D005119 8.8e-07 59.3 248 21.4
vmacro15103 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 8.8e-07 59.3 91 30.8
arahy.Tifrunner.gnm1.ann1.JW8TM2 Arachis hypogaea HOM05D006294 ORTHO05D007668 1.2e-06 58.9 70 44.3
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 1.2e-06 58.9 91 34.1
COL.COLO4_23210 Corchorus olitorius HOM05D004127 ORTHO05D005119 1.2e-06 58.9 91 34.1
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 1.2e-06 58.9 91 31.9
Prupe.3G010400 Prunus persica HOM05D004127 ORTHO05D005119 1.2e-06 58.9 91 31.9
Gohir.D12G127400 Gossypium hirsutum HOM05D004127 ORTHO05D005119 2.0e-06 58.2 91 31.9
Gorai.008G138300 Gossypium raimondii HOM05D004127 ORTHO05D005119 2.0e-06 58.2 91 31.9
MBI18_g03637_MAGBIO Magnolia biondii HOM05D004127 ORTHO05D005119 2.0e-06 58.2 91 31.9
Rhsim13G0003800 Rhododendron simsii HOM05D004127 ORTHO05D005119 2.0e-06 58.2 214 23.8
Gohir.A12G123700 Gossypium hirsutum HOM05D004127 ORTHO05D005119 2.6e-06 57.8 91 31.9
MD09G1284400 Malus domestica HOM05D004127 ORTHO05D005119 2.6e-06 57.8 100 31.0
Potri.002G193900 Populus trichocarpa HOM05D004127 ORTHO05D005119 2.6e-06 57.8 94 31.9
vmacro02392 Vaccinium macrocarpon HOM05D004127 ORTHO05D005119 2.6e-06 57.8 214 23.4
CDE08G0979 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 3.4e-06 57.4 91 30.8
RcHm_v2.0_Chr3g0487361 Rosa chinensis HOM05D004127 ORTHO05D005119 3.4e-06 57.4 150 28.0
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 4.4e-06 57.0 198 23.2
CARHR163140 Cardamine hirsuta HOM05D001779 ORTHO05D001753 4.4e-06 57.0 198 23.2
CDE02G4605 Ceratophyllum demersum HOM05D004127 ORTHO05D005119 4.4e-06 57.0 91 30.8


User provided reference genes

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