Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031973 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 0.0e+00 2991.4 1527 100.0
TAR365G0233 Trochodendron aralioides HOM05D002930 ORTHO05D003283 0.0e+00 1932.5 1498 67.5
Nn3g21179 Nelumbo nucifera HOM05D002930 ORTHO05D003283 0.0e+00 1882.1 1500 66.2
Actinidia05730 Actinidia chinensis HOM05D002930 ORTHO05D003283 0.0e+00 1880.9 1496 68.6
Lj9C680G12 Lonicera japonica HOM05D002930 ORTHO05D003283 0.0e+00 1879.4 1490 66.9
Dinv40246 Davidia involucrata HOM05D002930 ORTHO05D003283 0.0e+00 1864.7 1457 69.4
Dinv11268 Davidia involucrata HOM05D002930 ORTHO05D003283 0.0e+00 1827.8 1498 64.7
Thecc.05G299700 Theobroma cacao HOM05D002930 ORTHO05D003283 0.0e+00 1798.5 1495 65.0
Prupe.8G248000 Prunus persica HOM05D002930 ORTHO05D003283 0.0e+00 1796.2 1496 62.8
Cfa006078 Carpinus fangiana HOM05D002930 ORTHO05D003283 0.0e+00 1784.2 1516 62.9
Haze_04772 Corylus avellana HOM05D002930 ORTHO05D003283 0.0e+00 1781.9 1515 62.5
Aqoxy2G03186 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 0.0e+00 1776.1 1500 62.9
Duzib177G0642 Durio zibethinus HOM05D002930 ORTHO05D003283 0.0e+00 1771.5 1496 64.2
Potri.005G037700 Populus trichocarpa HOM05D002930 ORTHO05D003283 0.0e+00 1770.7 1496 63.2
MD03G1271800 Malus domestica HOM05D002930 ORTHO05D003283 0.0e+00 1767.3 1500 62.2
Hma1.2p1_2318F.1_g319800 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 0.0e+00 1761.1 1511 62.8
MBI19_g21645_MAGBIO Magnolia biondii HOM05D002930 ORTHO05D003283 0.0e+00 1760.0 1512 61.8
Cc02_g32570 Coffea canephora HOM05D002930 ORTHO05D003283 0.0e+00 1749.2 1490 62.6
Atru.chr5.1328 Acer truncatum HOM05D002930 ORTHO05D003283 0.0e+00 1748.0 1496 62.4
CSS0023451 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 0.0e+00 1746.1 1499 61.9
Manes.09G162700 Manihot esculenta HOM05D002930 ORTHO05D003283 0.0e+00 1743.4 1500 62.9
QL12p022973 Quercus lobata HOM05D002930 ORTHO05D003283 0.0e+00 1743.4 1497 61.5
Potri.014G137200 Populus trichocarpa HOM05D002930 ORTHO05D003283 0.0e+00 1741.9 1498 61.6
MD11G1292400 Malus domestica HOM05D002930 ORTHO05D003283 0.0e+00 1738.4 1512 61.0
Manes.05G071700 Manihot esculenta HOM05D002930 ORTHO05D003283 0.0e+00 1733.4 1513 61.3
CANSAT54G0439 Cannabis sativa HOM05D002930 ORTHO05D003283 0.0e+00 1724.1 1501 61.3
CSS0004978 Camellia sinensis var. sinensis HOM05D002930 ORTHO05D003283 0.0e+00 1723.8 1502 61.9
Sabra05G0038400 Salix brachista HOM05D002930 ORTHO05D003283 0.0e+00 1721.1 1471 62.8
PSO170G5253 Papaver somniferum HOM05D002930 ORTHO05D003283 0.0e+00 1720.7 1506 60.8
TWI59G1251 Tripterygium wilfordii HOM05D002930 ORTHO05D003283 0.0e+00 1716.0 1529 59.8
Duzib138G0507 Durio zibethinus HOM05D002930 ORTHO05D003283 0.0e+00 1715.7 1497 61.0
PSO302G0276 Papaver somniferum HOM05D002930 ORTHO05D003283 0.0e+00 1704.9 1505 60.4
Aqoxy5G00565 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 0.0e+00 1701.0 1503 60.9
Oeu047489.1 Olea europaea HOM05D002930 ORTHO05D003283 0.0e+00 1698.3 1495 60.6
Sabra14G0103600 Salix brachista HOM05D002930 ORTHO05D003283 0.0e+00 1697.9 1495 61.0
CANSAT25G2793 Cannabis sativa HOM05D002930 ORTHO05D003283 0.0e+00 1697.6 1493 61.5
Thecc.01G286000 Theobroma cacao HOM05D002930 ORTHO05D003283 0.0e+00 1697.2 1498 60.1
GSVIVG01022038001 Vitis vinifera HOM05D002930 ORTHO05D003283 0.0e+00 1696.8 1499 63.0
EL10Ac7g17191 Beta vulgaris HOM05D002930 ORTHO05D003283 0.0e+00 1694.5 1518 60.2
Gorai.004G215100 Gossypium raimondii HOM05D002930 ORTHO05D003283 0.0e+00 1693.7 1497 59.9
RcHm_v2.0_Chr6g0291991 Rosa chinensis HOM05D002930 ORTHO05D003283 0.0e+00 1693.3 1512 60.5
DCAR_022250 Daucus carota HOM05D002930 ORTHO05D003283 0.0e+00 1692.9 1508 61.0
CAN.G956.11 Capsicum annuum HOM05D002930 ORTHO05D003283 0.0e+00 1692.2 1513 59.9
Gorai.013G123400 Gossypium raimondii HOM05D002930 ORTHO05D003283 0.0e+00 1691.8 1495 61.7
Sc05g0005220 Simmondsia chinensis HOM05D002930 ORTHO05D003283 0.0e+00 1691.8 1484 61.4
Medtr1g089760 Medicago truncatula HOM05D002930 ORTHO05D003283 0.0e+00 1689.1 1512 60.2
FvH4_2g24180 Fragaria vesca HOM05D002930 ORTHO05D003283 0.0e+00 1688.3 1512 60.1
Peaxi162Scf00941g00113 Petunia axillaris HOM05D002930 ORTHO05D003283 0.0e+00 1687.9 1497 60.3
Lalb_Chr21g0306621 Lupinus albus HOM05D002930 ORTHO05D003283 0.0e+00 1686.0 1495 60.5
Gohir.D13G110000 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1684.5 1495 61.7
COL.COLO4_13526 Corchorus olitorius HOM05D002930 ORTHO05D003283 0.0e+00 1682.9 1493 62.4
Psat6g169840 Pisum sativum HOM05D002930 ORTHO05D003283 0.0e+00 1682.5 1513 60.2
Solyc09g074110.4 Solanum lycopersicum HOM05D002930 ORTHO05D003283 0.0e+00 1682.2 1497 59.9
FAN15G2723 Fragaria x ananassa HOM05D002930 ORTHO05D003283 0.0e+00 1681.4 1512 60.2
Gohir.A13G106800 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1681.4 1494 61.7
Sopen09g028930 Solanum pennellii HOM05D002930 ORTHO05D003283 0.0e+00 1681.4 1497 60.1
FAN27G1593 Fragaria x ananassa HOM05D002930 ORTHO05D003283 0.0e+00 1681.0 1512 60.1
TPR.G13301 Trifolium pratense HOM05D002930 ORTHO05D003283 0.0e+00 1677.1 1502 60.1
MELO3C015874.2 Cucumis melo HOM05D002930 ORTHO05D003283 0.0e+00 1674.1 1498 60.3
ATR0626G265 Amborella trichopoda HOM05D002930 ORTHO05D003283 0.0e+00 1672.5 1502 60.0
Lj5g0012178 Lotus japonicus HOM05D002930 ORTHO05D003283 0.0e+00 1672.1 1506 59.7
Sed0024970 Sechium edule HOM05D002930 ORTHO05D003283 0.0e+00 1671.4 1498 59.7
Glyma.10G023700 Glycine max HOM05D002930 ORTHO05D003283 0.0e+00 1663.3 1514 59.2
CsaV3_7G028480 Cucumis sativus L. HOM05D002930 ORTHO05D003283 0.0e+00 1661.0 1499 59.6
Migut.N02138 Erythranthe guttata HOM05D002930 ORTHO05D003283 0.0e+00 1658.7 1501 59.6
MSTRG.17432 Avicennia marina HOM05D002930 ORTHO05D003283 0.0e+00 1658.3 1514 58.7
Glyma.19G238300 Glycine max HOM05D002930 ORTHO05D003283 0.0e+00 1655.6 1495 59.1
Medtr7g113930 Medicago truncatula HOM05D002930 ORTHO05D003283 0.0e+00 1655.6 1493 59.3
Phvul.007G168500 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 0.0e+00 1655.6 1512 58.4
ClCG09G006750 Citrullus lanatus HOM05D002930 ORTHO05D003283 0.0e+00 1655.2 1496 59.2
PGR083G0736 Punica granatum HOM05D002930 ORTHO05D003283 0.0e+00 1655.2 1501 59.6
TPR.G33213 Trifolium pratense HOM05D002930 ORTHO05D003283 0.0e+00 1654.4 1493 59.3
Psat3g009520 Pisum sativum HOM05D002930 ORTHO05D003283 0.0e+00 1653.3 1493 59.3
Sp4g29950 Schrenkiella parvula HOM05D002930 ORTHO05D003283 0.0e+00 1652.9 1495 58.8
Carub.0004s3076 Capsella rubella HOM05D002930 ORTHO05D003283 0.0e+00 1651.3 1513 58.4
AL4G47650 Arabidopsis lyrata HOM05D002930 ORTHO05D003283 0.0e+00 1649.4 1511 58.2
AT2G48060 Arabidopsis thaliana HOM05D002930 ORTHO05D003283 0.0e+00 1648.3 1511 58.4
arahy.Tifrunner.gnm1.ann1.M1RB0X Arachis hypogaea HOM05D002930 ORTHO05D003283 0.0e+00 1647.9 1511 59.2
THA.LOC104802222 Tarenaya hassleriana HOM05D002930 ORTHO05D003283 0.0e+00 1647.5 1493 59.0
Gohir.D08G203100 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1647.1 1461 59.5
BraA04t18952Z Brassica rapa HOM05D002930 ORTHO05D003283 0.0e+00 1646.7 1495 58.6
Thhalv10001278m.g Eutrema salsugineum HOM05D002930 ORTHO05D003283 0.0e+00 1645.6 1495 58.5
Glyma.02G150200 Glycine max HOM05D002930 ORTHO05D003283 0.0e+00 1645.6 1512 58.7
AUR62033688 Chenopodium quinoa HOM05D002930 ORTHO05D003283 0.0e+00 1644.8 1513 59.0
Lj1g0027310 Lotus japonicus HOM05D002930 ORTHO05D003283 0.0e+00 1644.4 1489 59.4
A05p00070 Brassica napus HOM05D002930 ORTHO05D003283 0.0e+00 1638.6 1496 58.3
BraA05t19003Z Brassica rapa HOM05D002930 ORTHO05D003283 0.0e+00 1638.6 1496 58.3
Eucgr.B02004 Eucalyptus grandis HOM05D002930 ORTHO05D003283 0.0e+00 1637.9 1500 59.8
BolC4t28786H Brassica oleracea HOM05D002930 ORTHO05D003283 0.0e+00 1634.8 1501 58.1
VMungo0720G1730 Vigna mungo HOM05D002930 ORTHO05D003283 0.0e+00 1632.8 1487 58.5
Lalb_Chr04g0260861 Lupinus albus HOM05D002930 ORTHO05D003283 0.0e+00 1630.5 1504 58.8
Eucgr.H01545 Eucalyptus grandis HOM05D002930 ORTHO05D003283 0.0e+00 1630.2 1494 58.3
SalBow6G0735 Salvia bowleyana HOM05D002930 ORTHO05D003283 0.0e+00 1630.2 1501 58.3
BcaB02g08731 Brassica carinata HOM05D002930 ORTHO05D003283 0.0e+00 1627.8 1499 57.7
SGA_v2.0_scaffold172G39040 Striga asiatica HOM05D002930 ORTHO05D003283 0.0e+00 1627.1 1494 58.8
BolSC55t61233H Brassica oleracea HOM05D002930 ORTHO05D003283 0.0e+00 1626.3 1500 57.9
BNapus_Darmor_BZH_scaffold_188p00030 Brassica napus HOM05D002930 ORTHO05D003283 0.0e+00 1624.8 1500 57.9
BcaC02g12557 Brassica carinata HOM05D002930 ORTHO05D003283 0.0e+00 1620.5 1494 58.1
SGA_v2.0_scaffold11G05785 Striga asiatica HOM05D002930 ORTHO05D003283 0.0e+00 1619.0 1513 58.0
Gorai.007G133300 Gossypium raimondii HOM05D002930 ORTHO05D003283 0.0e+00 1616.3 1495 58.1
Phvul.006G095000 Phaseolus vulgaris HOM05D002930 ORTHO05D003283 0.0e+00 1616.3 1498 58.3
Gohir.D11G124400 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1614.0 1495 58.1
Gohir.A11G119600 Gossypium hirsutum HOM05D002930 ORTHO05D003283 0.0e+00 1612.4 1512 57.7
PGR119G1041 Punica granatum HOM05D002930 ORTHO05D003283 0.0e+00 1610.9 1495 59.4
Cpa.g.sc9.131 Carica papaya HOM05D002930 ORTHO05D003283 0.0e+00 1604.7 1486 59.8
SalBow3G3307 Salvia bowleyana HOM05D002930 ORTHO05D003283 0.0e+00 1604.0 1497 58.4
VMungo0540G0500 Vigna mungo HOM05D002930 ORTHO05D003283 0.0e+00 1602.8 1496 57.8
Aa31LG1G29470 Aethionema arabicum HOM05D002930 ORTHO05D003283 0.0e+00 1593.9 1498 57.5
AUR62036777 Chenopodium quinoa HOM05D002930 ORTHO05D003283 0.0e+00 1593.2 1498 57.9
PSO210G3942 Papaver somniferum HOM05D002930 ORTHO05D003283 0.0e+00 1593.2 1504 58.1
ECA236G2879 Erigeron canadensis HOM05D002930 ORTHO05D003283 0.0e+00 1592.0 1507 58.7
GSVIVG01011059001 Vitis vinifera HOM05D002930 ORTHO05D003283 0.0e+00 1586.6 1507 58.8
vmacro14944 Vaccinium macrocarpon HOM05D002930 ORTHO05D003283 0.0e+00 1583.9 1537 56.9
DCAR_018381 Daucus carota HOM05D002930 ORTHO05D003283 0.0e+00 1582.4 1495 57.3
Lsat_1_v5_gn_8_55460 Lactuca sativa HOM05D002930 ORTHO05D003283 0.0e+00 1580.8 1524 57.3
HanXRQChr04g0117981 Helianthus annuus HOM05D002930 ORTHO05D003283 0.0e+00 1575.5 1498 58.5
FAN24G0623 Fragaria x ananassa HOM05D002930 ORTHO05D003283 0.0e+00 1570.4 1427 59.5
Lsat_1_v5_gn_9_1821 Lactuca sativa HOM05D002930 ORTHO05D003283 0.0e+00 1570.1 1519 56.9
Aa31LG10G16860 Aethionema arabicum HOM05D002930 ORTHO05D003283 0.0e+00 1567.0 1517 56.4
Hund05360 Selenicereus undatus HOM05D002930 ORTHO05D003283 0.0e+00 1564.7 1512 56.7
arahy.Tifrunner.gnm1.ann1.HQA39L Arachis hypogaea HOM05D002930 ORTHO05D003283 0.0e+00 1560.8 1489 57.1
arahy.Tifrunner.gnm1.ann1.MJP89X Arachis hypogaea HOM05D002930 ORTHO05D003283 0.0e+00 1557.7 1490 56.9
unitig_744.g24487 Utricularia gibba HOM05D002930 ORTHO05D003283 0.0e+00 1554.7 1497 56.6
Ah.08g212870 Amaranthus hybridus HOM05D002930 ORTHO05D003283 0.0e+00 1540.0 1502 56.1
CiPaw.07G096000 Carya illinoinensis HOM05D002930 ORTHO05D003283 0.0e+00 1531.9 1361 60.2
Zm00001eb131990 Zea mays HOM05D002930 ORTHO05D003283 0.0e+00 1515.7 1511 55.3
Hma1.2p1_0628F.1_g191750 Hydrangea macrophylla HOM05D002930 ORTHO05D003283 0.0e+00 1492.6 1685 52.0
Ciclev10018445m.g Citrus clementina HOM05D002930 ORTHO05D003283 0.0e+00 1490.3 1502 55.7
HPP92_025233 Vanilla planifolia HOM05D002930 ORTHO05D003283 0.0e+00 1476.5 1540 53.0
HanXRQChr15g0466571 Helianthus annuus HOM05D002930 ORTHO05D003283 0.0e+00 1474.1 1531 53.8
Sed0017862 Sechium edule HOM05D002930 ORTHO05D003283 0.0e+00 1401.3 1367 56.5
DCAR_012456 Daucus carota HOM05D002930 ORTHO05D003283 0.0e+00 1390.6 1415 54.5
ECA247G2962 Erigeron canadensis HOM05D002930 ORTHO05D003283 0.0e+00 1304.3 1506 50.7
Lj1A43T58 Lonicera japonica HOM05D002930 ORTHO05D003283 0.0e+00 1293.1 1477 50.7
Nitab4.5_0002927g0030 Nicotiana tabacum HOM05D002930 ORTHO05D003283 0.0e+00 1182.5 1458 47.7
Nitab4.5_0001323g0140 Nicotiana tabacum HOM05D002930 ORTHO05D003283 0.0e+00 1154.0 1458 46.9
HPP92_017201 Vanilla planifolia HOM05D002930 ORTHO05D003283 4.2e-311 1072.0 1464 44.5
Rhsim01G0277800 Rhododendron simsii HOM05D002930 ORTHO05D003283 1.3e-310 1070.5 909 63.5
Ca_09378_v3 Cicer arietinum L. HOM05D002930 ORTHO05D003283 7.9e-310 1067.8 1312 48.6
Mapoly0023s0171 Marchantia polymorpha HOM05D002930 ORTHO05D003283 6.3e-307 1058.1 1592 41.5
arahy.Tifrunner.gnm1.ann1.K2UAY4 Arachis hypogaea HOM05D002930 ORTHO05D003283 6.5e-304 1048.1 987 58.7
Pp3c3_17170 Physcomitrium patens HOM05D002930 ORTHO05D003283 3.2e-303 1045.8 1564 40.9
AagrBONN_evm.TU.Sc2ySwM_228.583 Anthoceros agrestis HOM05D002930 ORTHO05D003283 2.7e-302 1042.7 1565 41.8
Pp3c9_13300 Physcomitrium patens HOM05D002930 ORTHO05D003283 9.7e-292 1007.7 1568 40.4
SHI15439 Sapria himalayana HOM05D002930 ORTHO05D003283 1.8e-282 976.9 1231 48.3
SMO358G0036 Selaginella moellendorffii HOM05D002930 ORTHO05D003283 1.8e-253 880.6 1518 39.1
Gohir.A08G184940 Gossypium hirsutum HOM05D002930 ORTHO05D003283 2.2e-235 820.5 794 56.5
Gohir.A08G184980 Gossypium hirsutum HOM05D002930 ORTHO05D003283 1.1e-231 808.1 664 62.2
CARHR143440 Cardamine hirsuta HOM05D002930 ORTHO05D003283 2.1e-230 803.9 678 61.5
CDE08G1581 Ceratophyllum demersum HOM05D002930 ORTHO05D003283 5.1e-224 782.7 869 52.1
Actinidia21090 Actinidia chinensis HOM05D002930 ORTHO05D003283 2.6e-188 664.1 962 43.7
A04p35160 Brassica napus HOM05D002930 ORTHO05D003283 3.8e-179 633.6 549 59.4
CBR_g45306 Chara braunii HOM05D002930 ORTHO05D000002 4.7e-177 626.7 1693 30.8
Rhsim01G0277700 Rhododendron simsii HOM05D002930 ORTHO05D003283 1.3e-171 608.6 524 59.7
Aqoxy211s003 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 2.1e-169 601.3 491 64.6
Actinidia21089 Actinidia chinensis HOM05D002930 ORTHO05D003283 7.2e-162 576.2 458 66.4
Ah.04g159840 Amaranthus hybridus HOM05D002930 ORTHO05D003283 2.2e-142 511.5 518 55.4
QL03p004167 Quercus lobata HOM05D002930 ORTHO05D003283 3.3e-74 285.0 323 54.2
Aqoxy211s002 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 4.5e-55 221.5 193 59.6
Aqoxy211s005 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 2.2e-54 219.2 172 64.5
SHI15437 Sapria himalayana HOM05D002930 ORTHO05D003283 1.5e-37 163.3 134 61.9
Psat3g168760 Pisum sativum HOM05D002930 ORTHO05D003283 5.4e-32 144.8 185 43.2
Aqoxy211s004 Aquilegia oxysepala HOM05D002930 ORTHO05D003283 4.7e-28 131.7 73 84.9
Actinidia24871 Actinidia chinensis HOM05D002930 ORTHO05D003283 4.9e-25 121.7 98 54.1
VMungo0647G1745 Vigna mungo HOM05D002930 ORTHO05D003283 1.5e-18 100.1 121 46.3
Cre09.g402108 Chlamydomonas reinhardtii HOM05D002930 ORTHO05D003283 9.2e-16 90.9 232 28.0
Psat6g102000 Pisum sativum HOM05D002930 ORTHO05D003283 3.9e-14 85.5 79 48.1
Eucgr.H01561 Eucalyptus grandis HOM05D002930 ORTHO05D003283 7.1e-08 64.7 60 55.0


User provided reference genes

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