Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 0.0e+00 1276.2 671 100.0
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 0.0e+00 1267.3 671 99.1
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 8.6e-309 1063.1 668 85.6
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.2e-288 995.3 655 83.4
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 7.8e-286 986.9 792 71.6
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 7.3e-284 980.3 678 79.1
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 7.5e-281 970.3 618 84.3
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 8.6e-277 956.8 676 76.6
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.8e-274 947.2 676 75.9
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 1.2e-273 946.4 673 76.7
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.5e-273 946.0 676 74.3
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 1.3e-269 932.9 703 70.6
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.3e-269 932.9 676 75.1
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 3.0e-269 931.8 677 76.4
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 3.0e-269 931.8 677 76.4
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 3.9e-269 931.4 668 77.4
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 8.7e-269 930.2 676 76.2
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.5e-265 919.5 673 74.9
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 6.4e-264 914.1 664 75.3
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 8.4e-264 913.7 673 75.5
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.9e-263 912.5 673 74.4
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.3e-261 906.4 678 73.7
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 4.3e-260 901.4 673 73.8
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.3e-260 901.4 685 72.0
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 4.3e-260 901.4 698 73.4
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 1.4e-258 896.3 676 73.4
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.8e-258 896.0 680 73.2
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 2.4e-258 895.6 665 74.4
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 2.4e-258 895.6 675 72.9
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.6e-257 890.6 640 75.9
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.7e-256 889.4 675 73.5
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 7.1e-255 884.0 665 74.1
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 7.1e-255 884.0 674 72.4
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.7e-254 882.1 667 73.5
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 4.6e-254 881.3 633 75.2
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 1.3e-251 873.2 673 72.8
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 1.5e-249 866.3 673 72.1
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 3.4e-249 865.1 680 71.5
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.6e-249 864.0 678 70.2
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 7.6e-249 864.0 655 73.1
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 2.2e-248 862.4 676 73.7
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 2.2e-248 862.4 670 72.8
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 3.8e-248 861.7 635 74.2
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 1.9e-247 859.4 678 71.1
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 1.8e-245 852.8 677 71.2
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.0e-245 852.0 677 72.5
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.9e-244 849.4 735 64.1
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.1e-243 845.9 682 69.9
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 2.1e-243 845.9 671 72.0
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-242 842.8 735 66.8
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 5.3e-242 841.3 688 69.3
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 5.8e-241 837.8 669 72.3
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 4.9e-240 834.7 613 74.6
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 9.3e-239 830.5 652 71.9
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 8.7e-237 823.9 671 68.1
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 1.9e-236 822.8 661 70.7
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 5.7e-236 821.2 674 69.1
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.7e-235 818.5 646 70.7
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.8e-235 818.1 674 68.7
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.8e-234 816.2 640 70.3
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 3.1e-234 815.5 679 65.7
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 1.7e-232 809.7 618 73.9
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 5.5e-231 804.7 683 67.6
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 7.2e-231 804.3 540 81.1
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.6e-230 803.1 559 80.1
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 3.0e-229 798.9 685 66.9
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.8e-227 792.3 602 73.8
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 5.0e-224 781.6 586 75.3
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 1.1e-223 780.4 625 70.9
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 2.0e-220 769.6 677 66.5
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 7.4e-220 767.7 669 68.2
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.4e-218 763.5 663 66.4
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 3.4e-217 758.8 671 63.3
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 3.8e-216 755.4 672 65.6
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 8.5e-216 754.2 700 65.3
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 4.7e-214 748.4 677 62.3
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 5.7e-212 741.5 494 83.2
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.8e-210 736.5 668 64.5
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 7.0e-210 734.6 678 63.9
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 1.2e-209 733.8 670 64.3
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 2.0e-209 733.0 669 64.3
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 2.0e-209 733.0 669 64.3
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 3.5e-209 732.3 672 63.8
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 3.5e-209 732.3 670 64.3
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 6.5e-208 728.0 670 63.6
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 6.5e-208 728.0 670 63.6
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 6.5e-208 728.0 670 63.6
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 2.5e-207 726.1 673 60.8
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 1.8e-205 719.9 525 75.6
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 8.8e-205 717.6 672 62.8
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 8.8e-205 717.6 672 62.8
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.9e-199 699.9 458 82.3
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.5e-199 699.5 611 62.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 9.8e-196 687.6 629 64.5
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.1e-194 684.1 695 59.7
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.2e-190 670.6 652 61.5
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.8e-187 659.4 614 60.7
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.0e-185 653.3 670 58.2
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.6e-184 648.3 722 53.7
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.2e-180 637.5 611 58.6
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 7.5e-180 634.8 673 55.7
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 4.6e-177 625.5 610 60.8
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 7.8e-177 624.8 653 59.3
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 6.4e-171 605.1 672 56.2
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.0e-164 583.6 466 66.1
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.4e-163 578.6 413 77.2
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.1e-159 567.8 658 53.2
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 6.9e-141 505.4 442 67.0
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.1e-134 483.8 678 47.3
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 5.5e-130 469.2 596 48.8
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.3e-126 458.0 502 58.0
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.6e-124 450.3 578 47.9
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 2.1e-113 414.1 313 78.6
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 5.7e-111 406.0 554 46.6
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 2.8e-110 403.7 697 41.3
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 5.0e-107 392.9 285 81.8
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.1e-98 365.2 561 44.9
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 2.2e-78 297.7 311 60.5
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 2.5e-74 284.3 291 56.7
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.9e-68 263.1 180 86.1
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.2e-64 250.0 332 43.4
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 9.8e-63 245.7 321 46.4
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.2e-62 244.6 200 63.5
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.1e-61 242.3 299 56.9
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.0e-59 234.2 303 51.5
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 2.1e-57 228.0 230 67.0
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.8e-55 219.9 289 42.9
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.1e-52 211.5 271 51.3
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-51 209.1 199 73.9
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-47 195.7 151 71.5
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.7e-44 184.5 208 47.6
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 1.9e-42 178.3 166 54.8
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 3.3e-42 177.6 103 93.2
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 4.6e-36 157.1 83 88.0
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.8e-30 137.5 252 37.3
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.8e-24 118.6 89 77.5
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.9e-22 110.5 121 44.6
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 9.3e-21 106.3 59 83.1
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.9e-19 100.9 119 52.1
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 8.7e-19 99.8 310 27.1
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 2.1e-17 95.1 63 68.3
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 6.9e-16 90.1 51 86.3
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 4.5e-15 87.4 91 48.4
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 4.5e-15 87.4 91 48.4
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 1.1e-13 82.8 102 53.9
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.4e-13 82.4 58 67.2
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.4e-13 82.4 58 67.2
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 5.5e-13 80.5 73 56.2
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 2.3e-11 75.1 53 62.3
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 8.7e-11 73.2 56 62.5
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 1.9e-10 72.0 166 33.7
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 2.8e-09 68.2 94 42.6
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 3.4e-07 61.2 139 28.8
A03p68880 Brassica napus HOM05D004640 ORTHO05D005489 7.6e-07 60.1 62 53.2
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.0e-06 59.7 36 86.1
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.3e-06 59.3 32 90.6
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-06 58.5 34 88.2
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 3.8e-06 57.8 58 55.2


User provided reference genes

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