Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031952 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 9.9e-52 206.5 101 100.0
CSS0009600 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 3.9e-48 194.5 103 95.1
CSS0025457 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.7e-48 193.7 101 92.1
CSS0040113 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 7.4e-47 190.3 104 92.3
CSS0036889 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 4.5e-44 181.0 101 88.1
CSS0009105 Camellia sinensis var. sinensis HOM05D004838 ORTHO05D005373 6.5e-27 124.0 102 67.6
PGSC0003DMG400018373 Solanum tuberosum HOM05D004838 ORTHO05D005373 1.8e-24 115.9 101 63.4
Nitab4.5_0002791g0020 Nicotiana tabacum HOM05D004838 ORTHO05D005373 2.5e-23 112.1 101 63.4
Solyc07g054730.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 2.5e-23 112.1 101 61.4
Sopen07g028660 Solanum pennellii HOM05D004838 ORTHO05D005373 2.5e-23 112.1 101 61.4
Actinidia09904 Actinidia chinensis HOM05D004838 ORTHO05D005373 9.7e-23 110.2 94 60.6
Nitab4.5_0010094g0010 Nicotiana tabacum HOM05D004838 ORTHO05D005373 1.1e-21 106.7 101 60.4
Dinv13826 Davidia involucrata HOM05D004838 ORTHO05D005373 1.8e-21 105.9 92 66.3
Hma1.2p1_0565F.1_g179630 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.3e-19 99.8 106 52.8
Lsat_1_v5_gn_3_40041 Lactuca sativa HOM05D004838 ORTHO05D005373 3.8e-19 98.2 101 53.5
Lsat_1_v5_gn_3_40080 Lactuca sativa HOM05D004838 ORTHO05D005373 5.0e-19 97.8 101 52.5
Rhsim06G0152400 Rhododendron simsii HOM05D004838 ORTHO05D005373 8.5e-19 97.1 98 55.1
SalBow7G0296 Salvia bowleyana HOM05D004838 ORTHO05D005373 1.1e-18 96.7 101 52.5
Hma1.2p1_0662F.1_g198280 Hydrangea macrophylla HOM05D004838 ORTHO05D005373 1.4e-18 96.3 101 57.4
CiPaw.04G122600 Carya illinoinensis HOM05D004838 ORTHO05D005373 2.5e-18 95.5 95 52.6
Lsat_1_v5_gn_4_68580 Lactuca sativa HOM05D004838 ORTHO05D005373 3.6e-17 91.7 101 51.5
Rhsim04G0062900 Rhododendron simsii HOM05D000831 ORTHO05D005373 2.3e-16 89.0 95 50.5
Cfa014541 Carpinus fangiana HOM05D004838 ORTHO05D005373 3.9e-16 88.2 98 50.0
DCAR_012975 Daucus carota HOM05D004838 ORTHO05D005373 3.9e-16 88.2 99 51.5
ECA246G4438 Erigeron canadensis HOM05D004838 ORTHO05D005373 3.9e-16 88.2 101 44.6
CiPaw.03G169600 Carya illinoinensis HOM05D004838 ORTHO05D005373 6.7e-16 87.4 95 50.5
Haze_13083 Corylus avellana HOM05D004838 ORTHO05D005373 1.5e-15 86.3 98 49.0
Migut.M00337 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.0e-15 85.9 103 48.5
Glyma.12G201000 Glycine max HOM05D004838 ORTHO05D005373 2.0e-15 85.9 98 45.9
MD17G1084900 Malus domestica HOM05D004838 ORTHO05D005373 5.7e-15 84.3 94 51.1
Atru.chr6.3079 Acer truncatum HOM05D004838 ORTHO05D005373 7.4e-15 84.0 96 46.9
Phvul.005G107800 Phaseolus vulgaris HOM05D004838 ORTHO05D005373 7.4e-15 84.0 98 48.0
Nn1g03874 Nelumbo nucifera HOM05D004838 ORTHO05D005373 9.7e-15 83.6 101 49.5
QL08p037147 Quercus lobata HOM05D004838 ORTHO05D005373 9.7e-15 83.6 89 49.4
MBI02_g13229_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.7e-14 82.8 101 48.5
Glyma.13G301200 Glycine max HOM05D004838 ORTHO05D005373 2.2e-14 82.4 98 43.9
SGA_v2.0_scaffold70G23461 Striga asiatica HOM05D004838 ORTHO05D005373 2.8e-14 82.0 98 46.9
Migut.H01017 Erythranthe guttata HOM05D004838 ORTHO05D005373 2.4e-13 79.0 98 48.0
Thecc.02G171400 Theobroma cacao HOM05D004838 ORTHO05D005373 2.4e-13 79.0 99 50.5
TAR629G1266 Trochodendron aralioides HOM05D004838 ORTHO05D005373 2.4e-13 79.0 101 50.5
Eucgr.K00912 Eucalyptus grandis HOM05D004838 ORTHO05D005373 7.0e-13 77.4 102 46.1
Lsat_1_v5_gn_3_40141 Lactuca sativa HOM05D004838 ORTHO05D005373 7.0e-13 77.4 97 49.5
Nn1g06781 Nelumbo nucifera HOM05D004838 ORTHO05D005373 7.0e-13 77.4 101 46.5
Cc05_g06190 Coffea canephora HOM05D004838 ORTHO05D005373 2.0e-12 75.9 98 46.9
Prupe.3G230300 Prunus persica HOM05D004838 ORTHO05D005373 2.6e-12 75.5 95 46.3
Ciclev10017352m.g Citrus clementina HOM05D004838 ORTHO05D005373 4.5e-12 74.7 95 45.3
Actinidia08019 Actinidia chinensis HOM05D004838 ORTHO05D005373 7.7e-12 73.9 100 47.0
Medtr2g090020 Medicago truncatula HOM05D004838 ORTHO05D005373 1.0e-11 73.6 98 42.9
Ca_01537_v3 Cicer arietinum L. HOM05D004838 ORTHO05D005373 1.7e-11 72.8 98 42.9
ECA246G0551 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.7e-11 72.8 92 48.9
Lalb_Chr14g0366611 Lupinus albus HOM05D004838 ORTHO05D005373 2.2e-11 72.4 99 42.4
MD09G1096600 Malus domestica HOM05D004838 ORTHO05D005373 2.9e-11 72.0 89 49.4
COL.COLO4_13681 Corchorus olitorius HOM05D004838 ORTHO05D005373 3.8e-11 71.6 99 46.5
Haze_13080 Corylus avellana HOM05D004838 ORTHO05D005373 5.0e-11 71.2 89 44.9
Psat5g269720 Pisum sativum HOM05D004838 ORTHO05D005373 8.5e-11 70.5 101 39.6
Lsat_1_v5_gn_3_40341 Lactuca sativa HOM05D004838 ORTHO05D005373 1.5e-10 69.7 99 42.4
Lsat_1_v5_gn_3_40461 Lactuca sativa HOM05D004838 ORTHO05D005373 1.5e-10 69.7 98 43.9
Sed0001014 Sechium edule HOM05D004838 ORTHO05D005373 1.5e-10 69.7 98 46.9
MELO3C018765.2 Cucumis melo HOM05D004838 ORTHO05D005373 1.9e-10 69.3 98 45.9
CsaV3_7G004130 Cucumis sativus L. HOM05D004838 ORTHO05D005373 1.9e-10 69.3 98 45.9
ECA246G2857 Erigeron canadensis HOM05D004838 ORTHO05D005373 1.9e-10 69.3 103 42.7
Manes.13G151900 Manihot esculenta HOM05D004838 ORTHO05D005373 1.9e-10 69.3 98 44.9
Lsat_1_v5_gn_3_40321 Lactuca sativa HOM05D004838 ORTHO05D005373 2.5e-10 68.9 98 42.9
ClCG02G001310 Citrullus lanatus HOM05D004838 ORTHO05D005373 3.2e-10 68.6 98 45.9
Psat5g269560 Pisum sativum HOM05D004838 ORTHO05D005373 5.5e-10 67.8 98 39.8
TWI36G0547 Tripterygium wilfordii HOM05D004838 ORTHO05D005373 5.5e-10 67.8 98 40.8
Gohir.D01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 7.2e-10 67.4 99 46.5
ECA246G1879 Erigeron canadensis HOM05D000214 ORTHO05D000131 1.2e-09 66.6 89 47.2
Sed0027638 Sechium edule HOM05D004838 ORTHO05D005373 4.7e-09 64.7 98 44.9
Psat5g269520 Pisum sativum HOM05D004838 ORTHO05D005373 6.1e-09 64.3 98 37.8
ECA246G0483 Erigeron canadensis HOM05D004838 ORTHO05D005373 8.0e-09 63.9 92 43.5
Gohir.A01G015300 Gossypium hirsutum HOM05D004838 ORTHO05D005373 8.0e-09 63.9 99 44.4
Lj3g0009480 Lotus japonicus HOM05D004838 ORTHO05D005373 8.0e-09 63.9 98 37.8
MBI18_g19832_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 8.0e-09 63.9 101 41.6
TPR.G27093 Trifolium pratense HOM05D004838 ORTHO05D005373 1.0e-08 63.5 98 37.8
Cpa.g.sc34.87 Carica papaya HOM05D004838 ORTHO05D005373 1.8e-08 62.8 100 46.0
CDE02G2086 Ceratophyllum demersum HOM05D001554 ORTHO05D001481 1.8e-08 62.8 101 40.6
Migut.H01015 Erythranthe guttata HOM05D004838 ORTHO05D005373 1.8e-08 62.8 98 44.9
Gorai.002G017000 Gossypium raimondii HOM05D004838 ORTHO05D005373 2.3e-08 62.4 99 44.4
TAR627G0102 Trochodendron aralioides HOM05D004838 ORTHO05D005373 4.0e-08 61.6 79 44.3
Manes.12G082700 Manihot esculenta HOM05D004838 ORTHO05D005373 5.2e-08 61.2 95 40.0
Psat5g269640 Pisum sativum HOM05D004838 ORTHO05D005373 5.2e-08 61.2 98 34.7
Potri.013G147700 Populus trichocarpa HOM05D004838 ORTHO05D005373 6.7e-08 60.8 99 47.5
Medtr2g090010 Medicago truncatula HOM05D004838 ORTHO05D005373 8.8e-08 60.5 98 38.8
MBI18_g27682_MAGBIO Magnolia biondii HOM05D004838 ORTHO05D005373 1.5e-07 59.7 101 39.6
ATR0852G001 Amborella trichopoda HOM05D004838 ORTHO05D005373 2.0e-07 59.3 93 41.9
FAN02G3359 Fragaria x ananassa HOM05D004838 ORTHO05D005373 5.7e-07 57.8 98 43.9
Lsat_1_v5_gn_3_40361 Lactuca sativa HOM05D004838 ORTHO05D005373 9.7e-07 57.0 97 38.1
Medtr2g090015 Medicago truncatula HOM05D004838 ORTHO05D005373 9.7e-07 57.0 98 34.7
Potri.019G116300 Populus trichocarpa HOM05D004838 ORTHO05D005373 9.7e-07 57.0 98 41.8
RcHm_v2.0_Chr2g0161551 Rosa chinensis HOM05D004838 ORTHO05D005373 9.7e-07 57.0 95 37.9
Solyc12g005600.1 Solanum lycopersicum HOM05D004838 ORTHO05D005373 2.2e-06 55.8 98 37.8
Carub.0007s1252 Capsella rubella HOM05D004838 ORTHO05D005373 2.8e-06 55.5 102 39.2
FAN05G2643 Fragaria x ananassa HOM05D004838 ORTHO05D005373 2.8e-06 55.5 98 42.9
Nitab4.5_0005244g0070 Nicotiana tabacum HOM05D004838 ORTHO05D005373 2.8e-06 55.5 91 42.9
Sabra19G0117300 Salix brachista HOM05D004838 ORTHO05D005373 2.8e-06 55.5 98 39.8
Sabra19G0136400 Salix brachista HOM05D004838 ORTHO05D005373 2.8e-06 55.5 98 39.8
AL7G24360 Arabidopsis lyrata HOM05D004838 ORTHO05D005373 4.8e-06 54.7 101 39.6
AT4G28240 Arabidopsis thaliana HOM05D004838 ORTHO05D005373 4.8e-06 54.7 101 39.6
Migut.H01016 Erythranthe guttata HOM05D004838 ORTHO05D005373 4.8e-06 54.7 97 42.3
unitig_27.g24815 Utricularia gibba HOM05D004838 ORTHO05D005373 8.2e-06 53.9 94 37.2


User provided reference genes

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