Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031939 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 3.7e-260 901.0 440 100.0
CSS0032720 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 2.9e-257 891.3 440 99.1
Actinidia22035 Actinidia chinensis HOM05D004472 ORTHO05D007169 1.3e-236 822.8 440 89.8
Hma1.2p1_0386F.1_g141865 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 8.9e-230 800.0 440 86.8
Dinv24072 Davidia involucrata HOM05D004472 ORTHO05D007169 2.2e-228 795.4 440 87.3
GSVIVG01033498001 Vitis vinifera HOM05D004472 ORTHO05D007169 5.6e-224 780.8 440 85.0
CSS0048424 Camellia sinensis var. sinensis HOM05D004472 ORTHO05D007169 1.2e-223 779.6 454 86.1
Rhsim03G0006000 Rhododendron simsii HOM05D004472 ORTHO05D007169 4.4e-221 771.2 420 89.0
SGA_v2.0_scaffold69G23061 Striga asiatica HOM05D004472 ORTHO05D007169 2.7e-218 761.9 439 83.8
Prupe.7G076900 Prunus persica HOM05D004472 ORTHO05D007169 7.8e-218 760.4 440 83.2
MSTRG.6484 Avicennia marina HOM05D004472 ORTHO05D007169 1.0e-217 760.0 441 83.2
TAR623G1736 Trochodendron aralioides HOM05D004472 ORTHO05D007169 2.3e-217 758.8 440 82.3
CiPaw.10G026500 Carya illinoinensis HOM05D004472 ORTHO05D007169 7.3e-216 753.8 439 82.2
Cpa.g.sc85.67 Carica papaya HOM05D004472 ORTHO05D007169 8.0e-215 750.4 439 81.1
MD12G1057200 Malus domestica HOM05D004472 ORTHO05D007169 5.8e-213 744.2 440 81.1
Migut.J01839 Erythranthe guttata HOM05D004472 ORTHO05D007169 9.8e-213 743.4 439 80.6
Manes.08G044600 Manihot esculenta HOM05D004472 ORTHO05D007169 1.7e-212 742.7 440 81.6
COL.COLO4_33983 Corchorus olitorius HOM05D004472 ORTHO05D007169 8.3e-212 740.3 438 81.1
ECA248G2191 Erigeron canadensis HOM05D004472 ORTHO05D007169 8.3e-212 740.3 438 79.9
Gohir.A04G055778 Gossypium hirsutum HOM05D004472 ORTHO05D007169 1.1e-211 740.0 440 80.7
HanXRQChr13g0390871 Helianthus annuus HOM05D004472 ORTHO05D007169 2.4e-211 738.8 440 80.7
Sopen03g016030 Solanum pennellii HOM05D004472 ORTHO05D007169 2.4e-211 738.8 441 81.2
Atru.chr8.1111 Acer truncatum HOM05D004472 ORTHO05D007169 3.2e-211 738.4 438 80.1
QL07p023729 Quercus lobata HOM05D004472 ORTHO05D007169 3.2e-211 738.4 439 79.7
CAN.G273.20 Capsicum annuum HOM05D004472 ORTHO05D007169 4.1e-211 738.0 441 79.8
TWI77G0336 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 4.1e-211 738.0 440 79.1
Glyma.03G144600 Glycine max HOM05D004472 ORTHO05D007169 7.0e-211 737.3 432 80.6
MD14G1057800 Malus domestica HOM05D004472 ORTHO05D007169 1.2e-210 736.5 436 80.0
Oeu007762.1 Olea europaea HOM05D004472 ORTHO05D007169 3.5e-210 734.9 427 82.9
Ca_08520_v3 Cicer arietinum L. HOM05D004472 ORTHO05D007169 4.6e-210 734.6 430 80.9
Potri.016G045800 Populus trichocarpa HOM05D004472 ORTHO05D007169 6.0e-210 734.2 438 80.6
CsaV3_3G038830 Cucumis sativus L. HOM05D004472 ORTHO05D007169 1.3e-209 733.0 438 79.7
Gorai.012G101400 Gossypium raimondii HOM05D004472 ORTHO05D007169 1.3e-209 733.0 440 80.0
THA.LOC104824475 Tarenaya hassleriana HOM05D004472 ORTHO05D007169 1.7e-209 732.6 437 79.4
Lj1g0006426 Lotus japonicus HOM05D004472 ORTHO05D007169 2.3e-209 732.3 434 80.6
RcHm_v2.0_Chr3g0479691 Rosa chinensis HOM05D004472 ORTHO05D007169 2.3e-209 732.3 437 80.1
Glyma.19G147500 Glycine max HOM05D004472 ORTHO05D007169 3.0e-209 731.9 432 80.1
Nn3g18269 Nelumbo nucifera HOM05D004472 ORTHO05D007169 8.6e-209 730.3 436 80.3
TPR.G18209 Trifolium pratense HOM05D004472 ORTHO05D007169 8.6e-209 730.3 430 80.2
Gohir.D04G090500 Gossypium hirsutum HOM05D004472 ORTHO05D007169 3.3e-208 728.4 440 79.5
Lj2C366G13 Lonicera japonica HOM05D004472 ORTHO05D007169 5.6e-208 727.6 421 82.9
Sabra16G0049800 Salix brachista HOM05D004472 ORTHO05D007169 9.5e-208 726.9 440 79.8
arahy.Tifrunner.gnm1.ann1.VM941Y Arachis hypogaea HOM05D004472 ORTHO05D007169 1.6e-207 726.1 441 78.7
CANSAT64G0932 Cannabis sativa HOM05D004472 ORTHO05D007169 1.6e-207 726.1 440 80.7
TWI74G0546 Tripterygium wilfordii HOM05D004472 ORTHO05D007169 3.6e-207 724.9 440 78.2
Potri.006G192400 Populus trichocarpa HOM05D004472 ORTHO05D007169 8.1e-207 723.8 438 79.0
arahy.Tifrunner.gnm1.ann1.W50LA9 Arachis hypogaea HOM05D004472 ORTHO05D007169 1.1e-206 723.4 441 78.7
Medtr7g093210 Medicago truncatula HOM05D004472 ORTHO05D007169 6.8e-206 720.7 426 80.3
Sc25g0005090 Simmondsia chinensis HOM05D004472 ORTHO05D007169 6.8e-206 720.7 455 76.5
Eucgr.K01838 Eucalyptus grandis HOM05D004472 ORTHO05D007169 2.0e-205 719.2 438 79.2
Lalb_Chr15g0079011 Lupinus albus HOM05D004472 ORTHO05D007169 2.6e-205 718.8 440 76.8
PGR142G1378 Punica granatum HOM05D004472 ORTHO05D007169 1.7e-204 716.1 440 76.1
AT2G42120 Arabidopsis thaliana HOM05D004472 ORTHO05D007169 2.2e-204 715.7 438 77.2
Sabra06G0147500 Salix brachista HOM05D004472 ORTHO05D007169 2.2e-204 715.7 439 77.4
Solyc03g063340.3 Solanum lycopersicum HOM05D004472 ORTHO05D007169 2.2e-204 715.7 421 81.9
FvH4_6g22330 Fragaria vesca HOM05D004472 ORTHO05D007169 3.7e-204 714.9 438 77.9
Nitab4.5_0001137g0080 Nicotiana tabacum HOM05D004472 ORTHO05D007169 8.3e-204 713.8 442 78.5
Phvul.001G143200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 1.9e-203 712.6 432 78.0
EL10Ac3g06916 Beta vulgaris HOM05D004472 ORTHO05D007169 1.2e-202 709.9 438 76.5
Thhalv10016664m.g Eutrema salsugineum HOM05D004472 ORTHO05D007169 2.1e-202 709.1 438 76.3
AL4G40490 Arabidopsis lyrata HOM05D004472 ORTHO05D007169 7.8e-202 707.2 439 76.3
FAN14G1969 Fragaria x ananassa HOM05D004472 ORTHO05D007169 5.1e-201 704.5 448 75.9
Aqoxy1G00476 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 6.6e-201 704.1 436 75.9
Lsat_1_v5_gn_5_163440 Lactuca sativa HOM05D004472 ORTHO05D007169 8.6e-201 703.7 423 78.7
vmacro07908 Vaccinium macrocarpon HOM05D004472 ORTHO05D007169 8.6e-201 703.7 473 75.5
PSO339G4742 Papaver somniferum HOM05D004472 ORTHO05D007169 1.9e-200 702.6 436 78.2
Sed0018995 Sechium edule HOM05D004472 ORTHO05D007169 1.9e-200 702.6 438 75.8
DCAR_017009 Daucus carota HOM05D004472 ORTHO05D007169 4.3e-200 701.4 423 78.7
Sp4g24330 Schrenkiella parvula HOM05D004472 ORTHO05D007169 7.3e-200 700.7 438 75.1
BcaB06g29226 Brassica carinata HOM05D004472 ORTHO05D007169 2.1e-199 699.1 437 75.5
Aa31LG1G24100 Aethionema arabicum HOM05D004472 ORTHO05D007169 3.6e-199 698.4 446 74.9
A04p32010 Brassica napus HOM05D004472 ORTHO05D007169 1.8e-198 696.0 437 75.5
BraA04t18658Z Brassica rapa HOM05D004472 ORTHO05D007169 2.4e-198 695.7 437 75.5
Phvul.001G142200 Phaseolus vulgaris HOM05D004472 ORTHO05D007169 6.8e-198 694.1 432 76.2
BcaC02g07263 Brassica carinata HOM05D004472 ORTHO05D007169 1.2e-197 693.3 438 75.3
C04p69510 Brassica napus HOM05D004472 ORTHO05D007169 1.2e-197 693.3 437 75.1
FAN05G5703 Fragaria x ananassa HOM05D004472 ORTHO05D007169 1.2e-197 693.3 438 76.7
Hund19203 Selenicereus undatus HOM05D004472 ORTHO05D007169 1.5e-197 693.0 421 79.6
PSO384G4825 Papaver somniferum HOM05D004472 ORTHO05D007169 7.6e-197 690.6 436 77.1
BolC4t28450H Brassica oleracea HOM05D004472 ORTHO05D007169 2.9e-196 688.7 438 74.9
Psat3g068520 Pisum sativum HOM05D004472 ORTHO05D007169 3.8e-196 688.3 414 78.5
VMungo1383G3660 Vigna mungo HOM05D004472 ORTHO05D007169 6.4e-196 687.6 414 78.0
Thecc.05G171300 Theobroma cacao HOM05D004472 ORTHO05D007169 7.1e-195 684.1 396 81.8
Carub.0004s2446 Capsella rubella HOM05D004472 ORTHO05D007169 9.2e-195 683.7 437 74.8
FAN02G0232 Fragaria x ananassa HOM05D004472 ORTHO05D007169 7.8e-194 680.6 464 72.4
Nitab4.5_0007619g0020 Nicotiana tabacum HOM05D004472 ORTHO05D007169 3.9e-193 678.3 421 78.1
FAN09G4048 Fragaria x ananassa HOM05D004472 ORTHO05D007169 5.6e-192 674.5 448 73.9
Os03g0128500 Oryza sativa ssp. japonica HOM05D004472 ORTHO05D007169 9.9e-189 663.7 432 71.8
Zm00001eb002170 Zea mays HOM05D004472 ORTHO05D007169 3.5e-186 655.2 432 70.8
Haze_19988 Corylus avellana HOM05D004472 ORTHO05D007169 1.5e-184 649.8 496 66.7
Ah.13g075820 Amaranthus hybridus HOM05D004472 ORTHO05D007169 3.1e-182 642.1 407 76.2
HPP92_018591 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.4e-179 633.3 433 68.4
ClCG10G017520 Citrullus lanatus HOM05D004472 ORTHO05D007169 5.3e-174 614.8 447 68.9
SEGI_25790 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 6.9e-174 614.4 438 66.4
HPP92_006516 Vanilla planifolia HOM05D004472 ORTHO05D007169 1.1e-171 607.1 478 61.7
SalBow6G5437 Salvia bowleyana HOM05D004472 ORTHO05D007169 3.2e-171 605.5 421 71.3
Haze_19990 Corylus avellana HOM05D004472 ORTHO05D007169 3.9e-169 598.6 431 71.0
CDE04G2547 Ceratophyllum demersum HOM05D004472 ORTHO05D007169 5.1e-169 598.2 393 73.8
PGSC0003DMG400014974 Solanum tuberosum HOM05D004472 ORTHO05D007169 6.7e-169 597.8 356 81.7
MELO3C030998.2 Cucumis melo HOM05D004472 ORTHO05D007169 4.3e-168 595.1 540 59.8
Sed0005670 Sechium edule HOM05D004472 ORTHO05D007169 2.6e-165 585.9 364 77.7
ATR0807G137 Amborella trichopoda HOM05D004472 ORTHO05D007169 7.6e-165 584.3 392 71.7
Duzib128G1617 Durio zibethinus HOM05D004472 ORTHO05D007169 1.9e-160 569.7 440 65.5
Pp3c3_28090 Physcomitrium patens HOM05D004472 ORTHO05D007169 3.2e-155 552.4 438 59.1
AUR62015368 Chenopodium quinoa HOM05D004472 ORTHO05D007169 7.2e-155 551.2 438 63.7
Mapoly0039s0092 Marchantia polymorpha HOM05D004472 ORTHO05D007169 3.9e-153 545.4 438 60.5
Aqoxy2G02978 Aquilegia oxysepala HOM05D004472 ORTHO05D007169 4.8e-151 538.5 464 59.7
AagrBONN_evm.TU.Sc2ySwM_362.678 Anthoceros agrestis HOM05D004472 ORTHO05D007169 1.8e-150 536.6 424 61.8
SMO111G0006 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 5.0e-148 528.5 435 57.9
AUR62012036 Chenopodium quinoa HOM05D004472 ORTHO05D007169 1.8e-145 520.0 421 62.5
SMO339G0063 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 1.9e-139 500.0 430 55.8
CBR_g38861 Chara braunii HOM05D004472 ORTHO05D000002 6.5e-132 474.9 443 52.8
CBR_g63079 Chara braunii HOM05D004472 ORTHO05D007169 1.7e-124 450.3 421 53.4
CARHR137180 Cardamine hirsuta HOM05D004472 ORTHO05D007169 5.7e-120 435.3 270 75.9
MBI06_g29494_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 2.9e-116 422.9 244 81.1
Ciclev10012551m.g Citrus clementina HOM05D004472 ORTHO05D007169 3.1e-105 386.3 244 79.1
Hma1.2p1_0386F.1_g141870 Hydrangea macrophylla HOM05D004472 ORTHO05D007169 7.0e-102 375.2 196 87.2
SHI42174 Sapria himalayana HOM05D004472 ORTHO05D007169 5.6e-99 365.5 269 68.0
Peaxi162Scf00258g00730 Petunia axillaris HOM05D004472 ORTHO05D007169 3.6e-98 362.8 243 76.5
MCO03G010 Micromonas commoda HOM05D004472 ORTHO05D007169 2.3e-97 360.1 450 42.4
PRCOL_00001477 Prasinoderma coloniale HOM05D004472 ORTHO05D007169 9.8e-96 354.8 388 43.0
Ciclev10012767m.g Citrus clementina HOM05D004472 ORTHO05D007169 1.3e-95 354.4 196 80.6
Cre08.g374050 Chlamydomonas reinhardtii HOM05D004472 ORTHO05D007169 6.6e-92 342.0 508 36.8
MBI06_g29491_MAGBIO Magnolia biondii HOM05D004472 ORTHO05D007169 7.3e-67 258.8 167 75.4
SHI33668 Sapria himalayana HOM05D004472 ORTHO05D007169 3.5e-61 240.0 197 62.4
SEGI_31079 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 1.3e-52 211.5 169 59.8
Lsat_1_v5_gn_5_163500 Lactuca sativa HOM05D004472 ORTHO05D007169 3.9e-52 209.9 184 59.2
Haze_26548 Corylus avellana HOM05D005705 ORTHO05D007152 7.6e-48 195.7 419 32.5
BcaNung04407 Brassica carinata HOM05D004472 ORTHO05D007169 1.3e-47 194.9 246 45.5
BcaNung06765 Brassica carinata HOM05D004472 ORTHO05D027254 7.9e-45 185.7 145 62.1
Peaxi162Scf00258g00729 Petunia axillaris HOM05D004472 ORTHO05D007169 4.3e-43 179.9 95 80.0
BcaC03g16493 Brassica carinata HOM05D004472 ORTHO05D013781 1.5e-40 171.4 195 47.7
BcaC04g21709 Brassica carinata HOM05D004472 ORTHO05D013781 4.5e-40 169.9 152 55.9
SEGI_39608 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.5e-40 169.9 132 59.1
A02p27200 Brassica napus HOM05D004472 ORTHO05D013781 5.9e-40 169.5 113 65.5
BcaB02g11100 Brassica carinata HOM05D004472 ORTHO05D027254 3.7e-34 150.2 145 53.8
BolC9t55720H Brassica oleracea HOM05D004472 ORTHO05D013781 1.3e-31 141.7 96 65.6
A09p46770 Brassica napus HOM05D004472 ORTHO05D013781 2.9e-31 140.6 92 68.5
BcaC01g04270 Brassica carinata HOM05D004472 ORTHO05D013781 3.6e-29 133.7 125 56.0
BcaC02g12460 Brassica carinata HOM05D004472 ORTHO05D013781 7.4e-27 125.9 106 60.4
BcaNung00145 Brassica carinata HOM05D004472 ORTHO05D013781 2.4e-25 120.9 126 50.0
BcaC05g24672 Brassica carinata HOM05D004472 ORTHO05D027254 5.3e-25 119.8 126 50.8
SEGI_06501 Sequoiadendron giganteum HOM05D004472 ORTHO05D007169 4.2e-22 110.2 96 54.2
C03p43020 Brassica napus HOM05D004472 ORTHO05D013781 3.1e-17 94.0 66 65.2
CARHR228030 Cardamine hirsuta HOM05D004472 ORTHO05D039758 4.5e-16 90.1 67 71.6
BcaB02g11125 Brassica carinata HOM05D004472 ORTHO05D039758 2.7e-13 80.9 65 67.7
CARHR228020 Cardamine hirsuta HOM05D004472 ORTHO05D007169 1.5e-11 75.1 67 55.2
SMO364G0765 Selaginella moellendorffii HOM05D004472 ORTHO05D007169 4.8e-10 70.1 42 73.8
BraA08t32859Z Brassica rapa HOM05D004472 ORTHO05D027254 1.4e-09 68.6 67 52.2
BcaB06g25539 Brassica carinata HOM05D004472 ORTHO05D094557 7.7e-08 62.8 82 43.9
BolC3t16570H Brassica oleracea HOM05D004472 ORTHO05D013781 1.0e-07 62.4 55 58.2
BraA07t27940Z Brassica rapa HOM05D004472 ORTHO05D013781 1.0e-07 62.4 55 58.2
BraA06t25637Z Brassica rapa HOM05D004472 ORTHO05D013781 2.2e-07 61.2 53 58.5
CARHR241940 Cardamine hirsuta HOM05D004472 ORTHO05D007169 2.5e-06 57.8 37 67.6


User provided reference genes

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