Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031935 Camellia sinensis var. sinensis HOM05D005452 ORTHO05D006618 2.6e-50 201.8 108 100.0
Actinidia08127 Actinidia chinensis HOM05D005452 ORTHO05D006618 2.5e-40 168.7 112 83.9
Actinidia01359 Actinidia chinensis HOM05D005452 ORTHO05D006618 7.9e-39 163.7 108 81.5
Dinv15209 Davidia involucrata HOM05D005452 ORTHO05D006618 3.0e-38 161.8 108 84.3
vmacro06707 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 6.7e-38 160.6 107 81.3
Rhsim12G0039600 Rhododendron simsii HOM05D005452 ORTHO05D006618 2.2e-36 155.6 95 85.3
GSVIVG01003295001 Vitis vinifera HOM05D005452 ORTHO05D006618 4.8e-36 154.5 108 80.6
TAR371G0357 Trochodendron aralioides HOM05D005452 ORTHO05D006618 6.3e-36 154.1 111 80.2
Thecc.02G263300 Theobroma cacao HOM05D005452 ORTHO05D006618 1.1e-35 153.3 112 75.0
Hma1.2p1_0079F.1_g041110 Hydrangea macrophylla HOM05D005452 ORTHO05D006618 2.4e-35 152.1 104 78.8
TAR629G2696 Trochodendron aralioides HOM05D005452 ORTHO05D006618 2.4e-35 152.1 111 79.3
Sc04g0009650 Simmondsia chinensis HOM05D005452 ORTHO05D006618 3.1e-35 151.8 103 79.6
Sopen10g023920 Solanum pennellii HOM05D005452 ORTHO05D006618 4.1e-35 151.4 97 82.5
Oeu056705.1 Olea europaea HOM05D005452 ORTHO05D006618 9.0e-35 150.2 107 75.7
Lj3C54T6 Lonicera japonica HOM05D005452 ORTHO05D006618 2.6e-34 148.7 107 75.7
Duzib268G1139 Durio zibethinus HOM05D005452 ORTHO05D006618 4.5e-34 147.9 111 74.8
Nitab4.5_0004217g0010 Nicotiana tabacum HOM05D001410 ORTHO05D006618 5.9e-34 147.5 107 77.6
CiPaw.05G172100 Carya illinoinensis HOM05D005452 ORTHO05D006618 7.6e-34 147.1 107 75.7
Nitab4.5_0000524g0050 Nicotiana tabacum HOM05D005452 ORTHO05D006618 7.6e-34 147.1 108 75.9
Nitab4.5_0002322g0150 Nicotiana tabacum HOM05D001410 ORTHO05D006618 7.6e-34 147.1 110 75.5
Solyc10g054060.2 Solanum lycopersicum HOM05D005452 ORTHO05D006618 7.6e-34 147.1 95 81.1
Ciclev10033123m.g Citrus clementina HOM05D005452 ORTHO05D006618 8.5e-33 143.7 114 74.6
ClCG10G012250 Citrullus lanatus HOM05D005452 ORTHO05D006618 2.5e-32 142.1 108 73.1
QL03p056962 Quercus lobata HOM05D005452 ORTHO05D006618 7.2e-32 140.6 111 73.0
DCAR_003344 Daucus carota HOM05D005452 ORTHO05D006618 1.2e-31 139.8 105 68.6
Sed0011581 Sechium edule HOM05D005452 ORTHO05D006618 1.2e-31 139.8 108 71.3
Eucgr.B03269 Eucalyptus grandis HOM05D005452 ORTHO05D006618 2.7e-31 138.7 108 75.0
EL10Ac5g10516 Beta vulgaris HOM05D005452 ORTHO05D006618 3.6e-31 138.3 106 68.9
Hund25399 Selenicereus undatus HOM05D005452 ORTHO05D006618 3.6e-31 138.3 89 83.1
AUR62024237 Chenopodium quinoa HOM05D005452 ORTHO05D006618 6.1e-31 137.5 105 71.4
AUR62005503 Chenopodium quinoa HOM05D005452 ORTHO05D006618 7.9e-31 137.1 96 75.0
FvH4_5g21170 Fragaria vesca HOM05D005452 ORTHO05D006618 1.0e-30 136.7 111 73.9
PGR102G3216 Punica granatum HOM05D005452 ORTHO05D006618 1.0e-30 136.7 111 69.4
COL.COLO4_23485 Corchorus olitorius HOM05D005452 ORTHO05D006618 2.3e-30 135.6 106 68.9
Oeu049174.1 Olea europaea HOM05D005452 ORTHO05D006618 3.0e-30 135.2 105 71.4
FAN13G0782 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.9e-30 134.8 111 73.0
HanXRQChr12g0371911 Helianthus annuus HOM05D005452 ORTHO05D006618 6.7e-30 134.0 106 67.9
Lsat_1_v5_gn_4_85301 Lactuca sativa HOM05D005452 ORTHO05D006618 6.7e-30 134.0 105 66.7
Lsat_1_v5_gn_8_152800 Lactuca sativa HOM05D005452 ORTHO05D006618 6.7e-30 134.0 105 67.6
Hund06040 Selenicereus undatus HOM05D005452 ORTHO05D006618 6.7e-30 134.0 104 72.1
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 8.8e-30 133.7 108 68.5
Prupe.5G046400 Prunus persica HOM05D005452 ORTHO05D006618 8.8e-30 133.7 112 70.5
RcHm_v2.0_Chr7g0208311 Rosa chinensis HOM05D005452 ORTHO05D006618 1.1e-29 133.3 113 71.7
Atru.chr11.2163 Acer truncatum HOM05D005452 ORTHO05D006618 1.5e-29 132.9 114 66.7
Peaxi162Scf00128g00434 Petunia axillaris HOM05D005452 ORTHO05D006618 1.5e-29 132.9 98 72.4
CANSAT11G1680 Cannabis sativa HOM05D005452 ORTHO05D006618 2.5e-29 132.1 108 69.4
CiPaw.04G056800 Carya illinoinensis HOM05D005452 ORTHO05D006618 2.5e-29 132.1 80 87.5
CAN.G128.103 Capsicum annuum HOM05D005452 ORTHO05D000001 3.3e-29 131.7 106 71.7
CsaV3_3G032030 Cucumis sativus L. HOM05D005452 ORTHO05D006618 4.3e-29 131.3 108 67.6
Gorai.009G233700 Gossypium raimondii HOM05D005452 ORTHO05D006618 4.3e-29 131.3 111 68.5
TPR.G32914 Trifolium pratense HOM05D005452 ORTHO05D006618 4.3e-29 131.3 112 67.9
ECA233G5110 Erigeron canadensis HOM05D005452 ORTHO05D006618 5.7e-29 131.0 107 63.6
Gohir.A05G223400 Gossypium hirsutum HOM05D005452 ORTHO05D006618 5.7e-29 131.0 111 67.6
MELO3C030920.2 Cucumis melo HOM05D005452 ORTHO05D006618 1.3e-28 129.8 105 68.6
Lj4g0014743 Lotus japonicus HOM05D005452 ORTHO05D006618 1.3e-28 129.8 114 66.7
Cpa.g.c31584 Carica papaya HOM05D005452 ORTHO05D006618 1.7e-28 129.4 108 69.4
FAN04G1087 Fragaria x ananassa HOM05D005452 ORTHO05D006618 2.2e-28 129.0 106 72.6
THA.LOC104824009 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 2.2e-28 129.0 108 66.7
TWI36G1628 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 2.2e-28 129.0 111 66.7
unitig_22.g6942 Utricularia gibba HOM05D005452 ORTHO05D006618 2.2e-28 129.0 107 68.2
Cfa009234 Carpinus fangiana HOM05D005452 ORTHO05D006618 2.8e-28 128.6 108 69.4
Lj5g0027337 Lotus japonicus HOM05D005452 ORTHO05D006618 2.8e-28 128.6 114 65.8
Lalb_Chr01g0021741 Lupinus albus HOM05D005452 ORTHO05D006618 2.8e-28 128.6 114 66.7
FAN18G0628 Fragaria x ananassa HOM05D005452 ORTHO05D006618 3.7e-28 128.3 106 72.6
Manes.13G021600 Manihot esculenta HOM05D005452 ORTHO05D006618 3.7e-28 128.3 113 67.3
SGA_v2.0_scaffold293G47424 Striga asiatica HOM05D005452 ORTHO05D006618 3.7e-28 128.3 94 75.5
FAN08G2976 Fragaria x ananassa HOM05D005452 ORTHO05D006618 4.8e-28 127.9 106 71.7
Lalb_Chr03g0040661 Lupinus albus HOM05D005452 ORTHO05D006618 1.1e-27 126.7 83 80.7
Nn1g08774 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.1e-27 126.7 110 64.5
Psat5g193600 Pisum sativum HOM05D005452 ORTHO05D006618 1.4e-27 126.3 108 67.6
Peaxi162Scf00067g00116 Petunia axillaris HOM05D005452 ORTHO05D006618 1.8e-27 125.9 103 70.9
TWI18G1019 Tripterygium wilfordii HOM05D005452 ORTHO05D006618 1.8e-27 125.9 111 64.0
MD09G1284200 Malus domestica HOM05D005452 ORTHO05D006618 2.4e-27 125.6 81 82.7
THA.LOC104805276 Tarenaya hassleriana HOM05D005452 ORTHO05D006618 2.4e-27 125.6 108 64.8
Migut.K00615 Erythranthe guttata HOM05D005452 ORTHO05D006618 4.1e-27 124.8 108 67.6
ATR0691G211 Amborella trichopoda HOM05D005452 ORTHO05D006618 5.3e-27 124.4 106 63.2
MD06G1040200 Malus domestica HOM05D005452 ORTHO05D006618 5.3e-27 124.4 109 64.2
SGA_v2.0_scaffold12G06036 Striga asiatica HOM05D005452 ORTHO05D006618 6.9e-27 124.0 88 77.3
Ca_14963_v3 Cicer arietinum L. HOM05D005452 ORTHO05D006618 9.1e-27 123.6 114 64.9
Glyma.18G249300 Glycine max HOM05D005452 ORTHO05D006618 9.1e-27 123.6 113 64.6
vmacro01118 Vaccinium macrocarpon HOM05D005452 ORTHO05D006618 2.0e-26 122.5 83 75.9
Medtr3g464760 Medicago truncatula HOM05D005452 ORTHO05D006618 2.6e-26 122.1 113 63.7
Sp2g15510 Schrenkiella parvula HOM05D005452 ORTHO05D006618 3.4e-26 121.7 108 63.9
Aa31LG2G6150 Aethionema arabicum HOM05D005452 ORTHO05D006618 4.5e-26 121.3 107 64.5
BcaB07g30231 Brassica carinata HOM05D005452 ORTHO05D006618 4.5e-26 121.3 109 65.1
BcaC03g17336 Brassica carinata HOM05D005452 ORTHO05D006618 4.5e-26 121.3 109 65.1
VMungo1383G1569 Vigna mungo HOM05D005452 ORTHO05D006618 4.5e-26 121.3 114 63.2
Carub.0005s0428 Capsella rubella HOM05D005452 ORTHO05D006618 7.7e-26 120.6 108 63.0
Lj4g0021307 Lotus japonicus HOM05D005452 ORTHO05D006618 1.0e-25 120.2 108 65.7
Thhalv10005184m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 1.3e-25 119.8 108 62.0
Glyma.09G244200 Glycine max HOM05D005452 ORTHO05D006618 1.3e-25 119.8 113 64.6
C07p35420 Brassica napus HOM05D005452 ORTHO05D006618 1.7e-25 119.4 105 63.8
CARHR147370 Cardamine hirsuta HOM05D005452 ORTHO05D006618 1.7e-25 119.4 108 63.0
Cc01_g03580 Coffea canephora HOM05D005452 ORTHO05D006618 1.7e-25 119.4 108 63.9
Gohir.D05G226100 Gossypium hirsutum HOM05D005452 ORTHO05D006618 1.7e-25 119.4 78 83.3
A06p42060 Brassica napus HOM05D005452 ORTHO05D006618 2.2e-25 119.0 105 63.8
BolC7t44066H Brassica oleracea HOM05D005452 ORTHO05D006618 2.2e-25 119.0 105 62.9
BraA06t27123Z Brassica rapa HOM05D005452 ORTHO05D006618 2.2e-25 119.0 105 63.8
CDE10G1265 Ceratophyllum demersum HOM05D005452 ORTHO05D006618 2.2e-25 119.0 108 59.3
Thhalv10005186m.g Eutrema salsugineum HOM05D005452 ORTHO05D006618 2.2e-25 119.0 108 62.0
SHI03748 Sapria himalayana HOM05D005452 ORTHO05D006618 2.2e-25 119.0 109 63.3
VMungo1080G1735 Vigna mungo HOM05D005452 ORTHO05D006618 2.9e-25 118.6 110 60.9
PSO210G2974 Papaver somniferum HOM05D005452 ORTHO05D006618 3.8e-25 118.2 110 64.5
A02p34530 Brassica napus HOM05D005452 ORTHO05D006618 8.5e-25 117.1 106 64.2
C02p52850 Brassica napus HOM05D005452 ORTHO05D006618 8.5e-25 117.1 106 64.2
BraA02t08463Z Brassica rapa HOM05D005452 ORTHO05D006618 8.5e-25 117.1 106 64.2
MBI15_g04991_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 1.1e-24 116.7 98 67.3
AT3G26360 Arabidopsis thaliana HOM05D005452 ORTHO05D006618 1.4e-24 116.3 108 62.0
MD02G1109400 Malus domestica HOM05D005452 ORTHO05D006618 1.4e-24 116.3 78 78.2
Aqoxy3G01257 Aquilegia oxysepala HOM05D005452 ORTHO05D006618 1.9e-24 115.9 110 60.0
Potri.010G048600 Populus trichocarpa HOM05D005452 ORTHO05D006618 1.9e-24 115.9 114 61.4
SalBow6G0301 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.5e-24 115.5 84 76.2
SalBow6G0335 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.5e-24 115.5 84 76.2
SalBow6G1267 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.5e-24 115.5 84 76.2
SalBow6G2856 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.5e-24 115.5 84 76.2
SalBow6G4340 Salvia bowleyana HOM05D005452 ORTHO05D006618 2.5e-24 115.5 84 76.2
AL5G15130 Arabidopsis lyrata HOM05D005452 ORTHO05D006618 4.2e-24 114.8 108 60.2
PSO017G6805 Papaver somniferum HOM05D005452 ORTHO05D006618 4.2e-24 114.8 113 60.2
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 4.2e-24 114.8 110 61.8
SalBow6G4107 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.2e-24 114.8 82 76.8
SalBow6G4977 Salvia bowleyana HOM05D005452 ORTHO05D006618 4.2e-24 114.8 82 76.8
Phvul.008G048300 Phaseolus vulgaris HOM05D005452 ORTHO05D006618 7.2e-24 114.0 114 59.6
BolC2t11364H Brassica oleracea HOM05D005452 ORTHO05D006618 1.6e-23 112.8 106 62.3
SalBow6G3385 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 112.8 83 74.7
SalBow6G6484 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.6e-23 112.8 84 75.0
HPP92_017381 Vanilla planifolia HOM05D005452 ORTHO05D006618 2.0e-21 105.9 78 71.8
MD04G1159200 Malus domestica HOM05D005452 ORTHO05D006618 1.8e-19 99.4 78 70.5
SEGI_39778 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 4.1e-19 98.2 78 69.2
Zm00001eb217020 Zea mays HOM05D005452 ORTHO05D006618 4.1e-19 98.2 92 55.4
SEGI_27388 Sequoiadendron giganteum HOM05D005452 ORTHO05D006618 6.9e-19 97.4 78 69.2
MD12G1125700 Malus domestica HOM05D005452 ORTHO05D006618 9.1e-19 97.1 78 69.2
Zm00001eb053730 Zea mays HOM05D005452 ORTHO05D006618 9.1e-19 97.1 109 48.6
Os03g0694700 Oryza sativa ssp. japonica HOM05D005452 ORTHO05D006618 1.3e-17 93.2 108 54.6
SalBow6G5661 Salvia bowleyana HOM05D005452 ORTHO05D006618 1.3e-17 93.2 70 72.9
MBI15_g11303_MAGBIO Magnolia biondii HOM05D005452 ORTHO05D006618 1.7e-17 92.8 101 57.4
Zm00001eb217070 Zea mays HOM05D000876 ORTHO05D000285 8.2e-12 73.9 91 48.4
unitig_8.g2920 Utricularia gibba HOM05D005452 ORTHO05D006618 7.0e-11 70.9 53 75.5
Medtr3g450960 Medicago truncatula HOM05D005452 ORTHO05D006618 4.5e-10 68.2 57 66.7
Nn1g09342 Nelumbo nucifera HOM05D005452 ORTHO05D006618 1.9e-08 62.8 60 58.3
SalBow6G2133 Salvia bowleyana HOM05D009895 ORTHO05D006618 4.2e-08 61.6 49 65.3
SalBow6G0426 Salvia bowleyana HOM05D005452 ORTHO05D006618 6.1e-07 57.8 44 70.5
Ciclev10006727m.g Citrus clementina HOM05D005452 ORTHO05D006618 8.8e-06 53.9 41 73.2


User provided reference genes

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