Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.4e-147 526.2 257 100.0
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 2.8e-143 511.9 257 97.7
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 6.7e-129 464.2 257 87.9
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.7e-127 459.5 257 86.8
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 3.7e-127 458.4 257 86.8
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 2.0e-125 452.6 257 85.2
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 3.5e-125 451.8 257 84.4
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 3.5e-125 451.8 257 84.4
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 4.5e-125 451.4 257 84.4
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 5.9e-125 451.1 257 84.8
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 7.7e-125 450.7 256 84.8
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 1.0e-124 450.3 256 84.8
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 1.0e-124 450.3 257 84.0
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 1.3e-124 449.9 256 84.8
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 1.3e-124 449.9 257 84.8
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 6.5e-124 447.6 257 84.0
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 8.5e-124 447.2 257 84.0
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 1.1e-123 446.8 257 84.0
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.9e-123 446.0 257 84.0
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 1.9e-123 446.0 257 84.0
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 2.5e-123 445.7 257 84.8
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 3.2e-123 445.3 256 83.2
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 3.2e-123 445.3 256 83.2
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 3.2e-123 445.3 257 84.0
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 7.2e-123 444.1 257 83.3
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 1.6e-122 443.0 257 84.0
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 2.1e-122 442.6 257 83.7
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 2.1e-122 442.6 255 83.1
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 3.6e-122 441.8 257 82.9
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 4.7e-122 441.4 257 83.3
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 4.7e-122 441.4 257 82.5
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 6.1e-122 441.0 256 84.8
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 1.4e-121 439.9 257 83.3
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 1.4e-121 439.9 256 84.4
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 1.8e-121 439.5 255 84.3
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.8e-121 439.5 255 83.5
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 1.8e-121 439.5 257 82.5
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 3.0e-121 438.7 257 82.9
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 3.0e-121 438.7 254 81.9
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 4.0e-121 438.3 256 84.0
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 5.2e-121 438.0 257 82.9
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 2.0e-120 436.0 258 82.9
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 5.7e-120 434.5 257 81.3
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 5.7e-120 434.5 257 81.7
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 5.7e-120 434.5 257 82.9
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 7.5e-120 434.1 257 80.5
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 9.7e-120 433.7 257 82.5
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 1.3e-119 433.3 257 82.9
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 1.3e-119 433.3 257 82.9
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 1.7e-119 433.0 254 83.1
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 2.2e-119 432.6 257 82.1
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 6.3e-119 431.0 257 80.9
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 8.2e-119 430.6 271 78.2
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 1.1e-118 430.3 257 82.1
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 1.8e-118 429.5 265 80.8
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 2.4e-118 429.1 300 71.7
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 3.1e-118 428.7 271 77.9
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 7.0e-118 427.6 257 81.3
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 9.1e-118 427.2 254 81.9
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.6e-117 426.4 257 79.8
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 1.6e-117 426.4 257 79.8
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 2.0e-117 426.0 257 79.4
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 2.0e-117 426.0 257 81.3
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 1.0e-116 423.7 257 78.6
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.0e-116 423.7 257 81.3
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 1.0e-116 423.7 257 81.3
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 1.0e-116 423.7 257 81.3
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 78.6
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 78.6
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 78.6
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 78.6
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 1.3e-116 423.3 257 78.6
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 1.3e-116 423.3 258 80.2
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 2.2e-116 422.5 257 78.6
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 2.2e-116 422.5 257 78.2
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 5.0e-116 421.4 257 79.4
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 5.0e-116 421.4 256 80.1
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 2.5e-115 419.1 256 79.7
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 9.4e-115 417.2 257 79.0
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 1.2e-114 416.8 263 78.7
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.7e-114 415.6 257 77.8
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 8.0e-114 414.1 257 78.6
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.0e-114 414.1 257 78.6
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.0e-114 414.1 257 78.6
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 1.8e-113 412.9 255 78.8
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 3.0e-113 412.1 257 77.0
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 8.8e-113 410.6 257 78.2
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 2.6e-112 409.1 230 87.0
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 3.7e-111 405.2 257 77.4
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 4.1e-110 401.7 257 75.9
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 1.6e-109 399.8 254 78.0
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 1.6e-109 399.8 253 77.5
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.5e-107 393.3 257 76.7
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 2.1e-106 389.4 214 86.9
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 3.6e-106 388.7 281 72.2
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 2.6e-104 382.5 257 73.2
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 1.8e-102 376.3 214 84.1
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 9.2e-102 374.0 250 72.8
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 1.1e-99 367.1 257 73.5
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 2.5e-99 365.9 257 72.8
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 4.0e-97 358.6 223 78.9
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 1.5e-96 356.7 231 74.0
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 2.6e-96 355.9 256 69.1
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 2.3e-89 332.8 198 81.3
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 6.4e-87 324.7 251 64.9
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 8.3e-87 324.3 247 66.0
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 4.1e-86 322.0 250 64.0
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 8.6e-84 314.3 203 74.4
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 2.8e-82 309.3 251 63.7
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 2.2e-71 273.1 159 81.1
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 6.0e-69 265.0 170 74.7
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 2.8e-66 256.1 153 78.4
Dinv13098 Davidia involucrata HOM05D005529 ORTHO05D006800 1.2e-64 250.8 132 90.2
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 1.0e-60 237.7 142 79.6
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 3.0e-60 236.1 254 50.8
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 1.5e-59 233.8 116 90.5
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 6.2e-58 228.4 247 47.8
Actinidia02780 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.9e-54 216.9 112 92.9
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 1.8e-52 210.3 130 79.2
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 2.3e-52 209.9 198 58.6
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 1.2e-48 197.6 272 41.5
Glyma.20G171766 Glycine max HOM05D005529 ORTHO05D006800 7.6e-48 194.9 105 88.6
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 1.7e-47 193.7 156 63.5
Rhsim06G0089200 Rhododendron simsii HOM05D005529 ORTHO05D006800 2.9e-47 193.0 105 88.6
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 1.6e-45 187.2 114 80.7
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 1.9e-43 180.3 257 44.7
HPP92_020840 Vanilla planifolia HOM05D005529 ORTHO05D006800 3.7e-42 176.0 105 81.9
BcaC08g46606 Brassica carinata HOM05D005529 ORTHO05D006800 1.8e-41 173.7 105 79.0
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.3e-39 167.5 104 81.7
Lsat_1_v5_gn_3_73520 Lactuca sativa HOM05D005529 ORTHO05D006800 1.1e-33 147.9 91 74.7
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.5e-32 144.1 117 64.1
SalBow7G1408 Salvia bowleyana HOM05D005529 ORTHO05D006800 2.2e-26 123.6 67 89.6
HPP92_020745 Vanilla planifolia HOM05D005529 ORTHO05D006800 4.1e-25 119.4 96 64.6
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.0e-23 114.8 102 58.8
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 4.4e-19 99.4 60 80.0
Glyma.16G101900 Glycine max HOM05D005529 ORTHO05D006800 3.2e-14 83.2 60 70.0
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 7.2e-14 82.0 55 74.5
VMungo0464G1177 Vigna mungo HOM05D005529 ORTHO05D006800 1.2e-08 64.7 40 80.0


User provided reference genes

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