Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031910 Camellia sinensis var. sinensis HOM05D005546 ORTHO05D006458 1.6e-76 289.3 139 100.0
Rhsim06G0129400 Rhododendron simsii HOM05D005546 ORTHO05D006458 2.3e-30 136.0 93 73.1
CSS0007349 Camellia sinensis var. sinensis HOM05D005546 ORTHO05D006458 6.6e-30 134.4 109 71.6
Manes.02G088600 Manihot esculenta HOM05D005546 ORTHO05D006458 9.5e-29 130.6 106 62.3
Actinidia11165 Actinidia chinensis HOM05D005546 ORTHO05D006458 3.6e-28 128.6 106 66.0
PGR142G3849 Punica granatum HOM05D005546 ORTHO05D006458 4.0e-27 125.2 106 61.3
Atru.chr6.2762 Acer truncatum HOM05D005546 ORTHO05D006458 6.8e-27 124.4 106 62.3
RcHm_v2.0_Chr2g0130851 Rosa chinensis HOM05D005546 ORTHO05D006458 6.8e-27 124.4 106 61.3
arahy.Tifrunner.gnm1.ann1.6YZ37K Arachis hypogaea HOM05D005546 ORTHO05D006458 8.9e-27 124.0 106 62.3
TWI23G0943 Tripterygium wilfordii HOM05D005546 ORTHO05D006458 8.9e-27 124.0 104 62.5
GSVIVG01020748001 Vitis vinifera HOM05D005546 ORTHO05D006458 1.2e-26 123.6 105 61.0
Duzib264G0641 Durio zibethinus HOM05D005546 ORTHO05D006458 2.0e-26 122.9 106 61.3
Duzib147G1413 Durio zibethinus HOM05D005546 ORTHO05D006458 3.4e-26 122.1 104 60.6
LjContig00201_ERROPOS200000g0008486 Lotus japonicus HOM05D005546 ORTHO05D006458 4.4e-26 121.7 106 59.4
CiPaw.03G192900 Carya illinoinensis HOM05D005546 ORTHO05D006458 7.6e-26 120.9 106 58.5
arahy.Tifrunner.gnm1.ann1.UYWS6C Arachis hypogaea HOM05D005546 ORTHO05D006458 1.7e-25 119.8 106 59.4
CANSAT64G0501 Cannabis sativa HOM05D005546 ORTHO05D006458 2.2e-25 119.4 105 60.0
arahy.Tifrunner.gnm1.ann1.ZDU917 Arachis hypogaea HOM05D005546 ORTHO05D006458 2.9e-25 119.0 106 58.5
FvH4_6g27700 Fragaria vesca HOM05D005546 ORTHO05D006458 2.9e-25 119.0 106 57.5
FAN05G1474 Fragaria x ananassa HOM05D005546 ORTHO05D006458 2.9e-25 119.0 106 57.5
Nn3g21116 Nelumbo nucifera HOM05D005546 ORTHO05D006458 2.9e-25 119.0 106 59.4
Thecc.01G154000 Theobroma cacao HOM05D005546 ORTHO05D006458 2.9e-25 119.0 106 60.4
Cc05_g08540 Coffea canephora HOM05D005546 ORTHO05D006458 3.7e-25 118.6 105 59.0
FAN14G3666 Fragaria x ananassa HOM05D005546 ORTHO05D006458 6.4e-25 117.9 106 56.6
Lalb_Chr19g0134821 Lupinus albus HOM05D005546 ORTHO05D006458 1.1e-24 117.1 104 59.6
Eucgr.K01146 Eucalyptus grandis HOM05D005546 ORTHO05D006458 1.4e-24 116.7 104 58.7
Peaxi162Scf00469g00623 Petunia axillaris HOM05D005546 ORTHO05D006458 1.4e-24 116.7 102 57.8
Sabra14G0108400 Salix brachista HOM05D005546 ORTHO05D006458 1.4e-24 116.7 110 58.2
TAR629G1410 Trochodendron aralioides HOM05D005546 ORTHO05D006458 2.4e-24 115.9 104 61.5
CAN.G1360.15 Capsicum annuum HOM05D005546 ORTHO05D006458 3.2e-24 115.5 102 58.8
Gohir.A12G091600 Gossypium hirsutum HOM05D005546 ORTHO05D006458 3.2e-24 115.5 105 57.1
PGSC0003DMG400020433 Solanum tuberosum HOM05D005546 ORTHO05D006458 3.2e-24 115.5 103 59.2
VMungo1080G0059 Vigna mungo HOM05D005546 ORTHO05D006458 3.2e-24 115.5 106 59.4
Medtr2g083920 Medicago truncatula HOM05D005546 ORTHO05D006458 4.1e-24 115.2 106 56.6
Phvul.005G094000 Phaseolus vulgaris HOM05D005546 ORTHO05D006458 4.1e-24 115.2 106 58.5
Gohir.D12G091700 Gossypium hirsutum HOM05D005546 ORTHO05D006458 5.4e-24 114.8 105 57.1
Nitab4.5_0007923g0010 Nicotiana tabacum HOM05D005546 ORTHO05D006458 5.4e-24 114.8 107 56.1
Solyc07g055260.3 Solanum lycopersicum HOM05D005546 ORTHO05D006458 7.1e-24 114.4 103 58.3
Sopen07g026960 Solanum pennellii HOM05D005546 ORTHO05D006458 7.1e-24 114.4 103 58.3
FAN23G3057 Fragaria x ananassa HOM05D005546 ORTHO05D006458 9.2e-24 114.0 108 56.5
Gorai.008G099300 Gossypium raimondii HOM05D005546 ORTHO05D006458 9.2e-24 114.0 105 57.1
Nn1g04507 Nelumbo nucifera HOM05D005546 ORTHO05D006458 1.6e-23 113.2 106 57.5
Prupe.3G113500 Prunus persica HOM05D005546 ORTHO05D006458 1.6e-23 113.2 106 56.6
COL.COLO4_33615 Corchorus olitorius HOM05D005546 ORTHO05D006458 2.1e-23 112.8 99 58.6
MELO3C004040.2 Cucumis melo HOM05D005546 ORTHO05D006458 2.1e-23 112.8 106 56.6
Glyma.12G212100 Glycine max HOM05D005546 ORTHO05D006458 2.1e-23 112.8 106 55.7
Ciclev10017707m.g Citrus clementina HOM05D005546 ORTHO05D006458 2.7e-23 112.5 107 56.1
MD17G1264200 Malus domestica HOM05D005546 ORTHO05D006458 2.7e-23 112.5 107 58.9
Nitab4.5_0000249g0130 Nicotiana tabacum HOM05D005546 ORTHO05D006458 2.7e-23 112.5 102 56.9
Phvul.011G127500 Phaseolus vulgaris HOM05D005546 ORTHO05D006458 2.7e-23 112.5 104 57.7
AUR62024047 Chenopodium quinoa HOM05D005546 ORTHO05D006458 3.5e-23 112.1 106 59.4
Dinv12364 Davidia involucrata HOM05D005546 ORTHO05D006458 3.5e-23 112.1 106 56.6
Glyma.12G130000 Glycine max HOM05D005546 ORTHO05D006458 3.5e-23 112.1 104 57.7
QL08p042319 Quercus lobata HOM05D005546 ORTHO05D006458 3.5e-23 112.1 103 57.3
vmacro12387 Vaccinium macrocarpon HOM05D005546 ORTHO05D006458 4.6e-23 111.7 77 71.4
EL10Ac9g20985 Beta vulgaris HOM05D005546 ORTHO05D006458 7.8e-23 110.9 100 60.0
Glyma.13G289600 Glycine max HOM05D005546 ORTHO05D006458 1.0e-22 110.5 106 54.7
TPR.G20000 Trifolium pratense HOM05D005546 ORTHO05D006458 1.0e-22 110.5 107 56.1
MSTRG.6780 Avicennia marina HOM05D005546 ORTHO05D006458 1.3e-22 110.2 103 59.2
SGA_v2.0_scaffold9G04842 Striga asiatica HOM05D005546 ORTHO05D006458 1.7e-22 109.8 124 49.2
Lalb_Chr03g0030041 Lupinus albus HOM05D005546 ORTHO05D006458 2.3e-22 109.4 107 55.1
THA.LOC104824189 Tarenaya hassleriana HOM05D005546 ORTHO05D006458 2.3e-22 109.4 106 54.7
Glyma.06G275400 Glycine max HOM05D005546 ORTHO05D006458 5.1e-22 108.2 104 57.7
Sc21g0004080 Simmondsia chinensis HOM05D005546 ORTHO05D006458 5.1e-22 108.2 104 55.8
MD09G1235400 Malus domestica HOM05D005546 ORTHO05D006458 8.6e-22 107.5 78 62.8
ATR0012G013 Amborella trichopoda HOM05D005546 ORTHO05D006458 1.1e-21 107.1 104 54.8
CsaV3_2G008280 Cucumis sativus L. HOM05D005546 ORTHO05D006458 1.1e-21 107.1 106 54.7
Sed0025906 Sechium edule HOM05D005546 ORTHO05D006458 1.1e-21 107.1 107 55.1
AUR62040436 Chenopodium quinoa HOM05D005546 ORTHO05D006458 1.9e-21 106.3 99 59.6
FAN02G2038 Fragaria x ananassa HOM05D003255 ORTHO05D006458 2.5e-21 105.9 132 47.0
MBI06_g36540_MAGBIO Magnolia biondii HOM05D005546 ORTHO05D006458 3.3e-21 105.5 111 51.4
Hund07771 Selenicereus undatus HOM05D005546 ORTHO05D006458 4.3e-21 105.1 109 56.0
Migut.M00246 Erythranthe guttata HOM05D005546 ORTHO05D006458 7.3e-21 104.4 104 53.8
AL4G41330 Arabidopsis lyrata HOM05D005546 ORTHO05D006458 9.6e-21 104.0 106 52.8
AT2G42750 Arabidopsis thaliana HOM05D005546 ORTHO05D006458 1.2e-20 103.6 106 52.8
Sp4g24870 Schrenkiella parvula HOM05D005546 ORTHO05D006458 1.2e-20 103.6 106 52.8
Carub.0004s2518 Capsella rubella HOM05D005546 ORTHO05D006458 1.6e-20 103.2 106 52.8
Thhalv10016894m.g Eutrema salsugineum HOM05D005546 ORTHO05D006458 1.6e-20 103.2 106 51.9
PSO170G1916 Papaver somniferum HOM05D005546 ORTHO05D006458 2.1e-20 102.8 101 51.5
ClCG07G002640 Citrullus lanatus HOM05D005546 ORTHO05D006458 2.8e-20 102.4 95 54.7
VMungo1127G0112 Vigna mungo HOM05D005546 ORTHO05D006458 3.6e-20 102.1 120 50.0
Aqoxy4G00255 Aquilegia oxysepala HOM05D005546 ORTHO05D006458 4.7e-20 101.7 104 54.8
A05p03260 Brassica napus HOM05D005546 ORTHO05D006458 6.2e-20 101.3 103 52.4
A05p03330 Brassica napus HOM05D005546 ORTHO05D006458 6.2e-20 101.3 103 52.4
BraA05t19315Z Brassica rapa HOM05D005546 ORTHO05D006458 6.2e-20 101.3 103 52.4
BraA05t19321Z Brassica rapa HOM05D005546 ORTHO05D006458 6.2e-20 101.3 103 52.4
BraA09t41561Z Brassica rapa HOM05D005546 ORTHO05D006458 6.2e-20 101.3 103 52.4
C04p03900 Brassica napus HOM05D005546 ORTHO05D006458 8.1e-20 100.9 102 52.9
CDE09G0167 Ceratophyllum demersum HOM05D005546 ORTHO05D006458 1.1e-19 100.5 106 50.0
Oeu030086.3 Olea europaea HOM05D005546 ORTHO05D006458 1.1e-19 100.5 106 52.8
HPP92_022988 Vanilla planifolia HOM05D005546 ORTHO05D006458 1.4e-19 100.1 106 53.8
BolC4t22026H Brassica oleracea HOM05D005546 ORTHO05D006458 2.4e-19 99.4 102 52.9
Aa31LG1G24500 Aethionema arabicum HOM05D005546 ORTHO05D006458 3.1e-19 99.0 106 50.0
CARHR137830 Cardamine hirsuta HOM05D005546 ORTHO05D006458 4.0e-19 98.6 106 50.0
Medtr4g080350 Medicago truncatula HOM05D005546 ORTHO05D006458 4.0e-19 98.6 105 54.3
unitig_62.g23133 Utricularia gibba HOM05D005546 ORTHO05D006458 4.0e-19 98.6 104 51.0
HanXRQChr17g0558411 Helianthus annuus HOM05D005546 ORTHO05D006458 5.2e-19 98.2 106 53.8
Lj8C100G10 Lonicera japonica HOM05D005546 ORTHO05D006458 1.2e-18 97.1 106 52.8
CDE02G0455 Ceratophyllum demersum HOM05D005546 ORTHO05D006458 1.5e-18 96.7 100 50.0
Potri.014G143400 Populus trichocarpa HOM05D005546 ORTHO05D006458 2.0e-18 96.3 106 49.1
Os01g0730500 Oryza sativa ssp. japonica HOM05D005546 ORTHO05D006458 5.8e-18 94.7 102 52.9
TPR.G40234 Trifolium pratense HOM05D005546 ORTHO05D006458 1.7e-17 93.2 104 51.9
SalBow7G1389 Salvia bowleyana HOM05D005546 ORTHO05D006458 4.9e-17 91.7 107 51.4
Zm00001eb361960 Zea mays HOM05D005546 ORTHO05D006458 1.1e-16 90.5 103 53.4
Hund00861 Selenicereus undatus HOM05D005546 ORTHO05D006458 1.4e-16 90.1 105 49.5
Os05g0529700 Oryza sativa ssp. japonica HOM05D005546 ORTHO05D006458 2.7e-15 85.9 104 48.1
Lsat_1_v5_gn_4_65101 Lactuca sativa HOM05D005546 ORTHO05D006458 6.0e-15 84.7 109 50.5
Zm00001eb293310 Zea mays HOM05D005546 ORTHO05D006458 7.8e-15 84.3 107 50.5
arahy.Tifrunner.gnm1.ann1.UW10HH Arachis hypogaea HOM05D005546 ORTHO05D006458 1.9e-13 79.7 93 51.6
Cpa.g.sc52.156 Carica papaya HOM05D005546 ORTHO05D006458 2.8e-12 75.9 107 45.8
Haze_13429 Corylus avellana HOM05D005546 ORTHO05D006458 9.9e-10 67.4 61 55.7
ECA234G3368 Erigeron canadensis HOM05D000557 ORTHO05D002315 4.9e-09 65.1 85 48.2
Zm00001eb154190 Zea mays HOM05D005546 ORTHO05D006458 2.4e-08 62.8 87 44.8
DCAR_021297 Daucus carota HOM05D005546 ORTHO05D006458 7.1e-08 61.2 44 72.7
Pp3c20_22300 Physcomitrium patens HOM05D005546 ORTHO05D006458 7.1e-08 61.2 99 39.4
SEGI_27856 Sequoiadendron giganteum HOM05D005546 ORTHO05D006458 9.3e-08 60.8 96 37.5
Pp3c24_1420 Physcomitrium patens HOM05D005546 ORTHO05D006458 1.2e-07 60.5 99 38.4
MSTRG.12830 Avicennia marina HOM05D005546 ORTHO05D006458 3.5e-07 58.9 60 48.3
Mapoly0005s0147 Marchantia polymorpha HOM05D005546 ORTHO05D006458 7.9e-07 57.8 94 39.4
Thecc.01G154100 Theobroma cacao HOM05D005546 ORTHO05D407565 1.3e-06 57.0 45 64.4


User provided reference genes

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