Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031909 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.9e-105 384.0 201 100.0
CSS0023603 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 5.9e-56 221.5 200 65.5
CSS0048086 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 3.6e-37 159.1 228 48.2
Haze_12469 Corylus avellana HOM05D003968 ORTHO05D004077 4.4e-27 125.6 216 43.5
Cfa009411 Carpinus fangiana HOM05D003968 ORTHO05D004077 1.3e-26 124.0 216 43.1
CiPaw.05G103900 Carya illinoinensis HOM05D003968 ORTHO05D004077 1.3e-26 124.0 213 41.8
QL03p050330 Quercus lobata HOM05D003968 ORTHO05D004077 8.4e-26 121.3 217 40.1
Potri.001G062000 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.2e-25 119.0 217 40.1
Dinv17895 Davidia involucrata HOM05D003968 ORTHO05D004077 5.4e-25 118.6 212 42.5
TWI75G0242 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.6e-24 117.1 223 39.5
Potri.003G165800 Populus trichocarpa HOM05D003968 ORTHO05D004077 4.6e-24 115.5 217 39.2
CSS0002178 Camellia sinensis var. sinensis HOM05D003968 ORTHO05D004077 6.0e-24 115.2 200 42.5
Sabra01G0044600 Salix brachista HOM05D003968 ORTHO05D004077 6.0e-24 115.2 217 39.6
CiPaw.06G107600 Carya illinoinensis HOM05D003968 ORTHO05D004077 7.8e-24 114.8 212 42.0
Actinidia30604 Actinidia chinensis HOM05D003968 ORTHO05D004077 1.0e-23 114.4 215 41.4
Manes.09G185900 Manihot esculenta HOM05D003968 ORTHO05D004077 1.0e-23 114.4 233 39.1
Nitab4.5_0007554g0020 Nicotiana tabacum HOM05D003968 ORTHO05D004077 1.3e-23 114.0 229 40.6
Peaxi162Scf00128g01760 Petunia axillaris HOM05D003968 ORTHO05D004077 5.1e-23 112.1 215 40.0
Duzib251G0690 Durio zibethinus HOM05D003968 ORTHO05D004077 6.6e-23 111.7 235 40.0
Manes.08G103100 Manihot esculenta HOM05D003968 ORTHO05D004077 8.7e-23 111.3 225 37.8
VMungo1383G2332 Vigna mungo HOM05D003968 ORTHO05D004077 8.7e-23 111.3 218 40.8
RcHm_v2.0_Chr4g0429341 Rosa chinensis HOM05D003968 ORTHO05D004077 1.1e-22 110.9 236 39.8
Oeu003280.1 Olea europaea HOM05D003968 ORTHO05D004077 2.5e-22 109.8 223 38.1
Nitab4.5_0001600g0080 Nicotiana tabacum HOM05D003968 ORTHO05D004077 3.3e-22 109.4 228 39.9
Phvul.008G000400 Phaseolus vulgaris HOM05D003968 ORTHO05D004077 3.3e-22 109.4 218 39.0
Sabra03G0121000 Salix brachista HOM05D003968 ORTHO05D004077 4.3e-22 109.0 217 38.7
FAN17G1317 Fragaria x ananassa HOM05D003968 ORTHO05D004077 5.6e-22 108.6 237 40.1
PGR057G0001 Punica granatum HOM05D003968 ORTHO05D004077 7.3e-22 108.2 220 39.1
PGR119G2322 Punica granatum HOM05D003968 ORTHO05D004077 7.3e-22 108.2 220 39.1
TWI36G1280 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.2e-21 107.5 220 36.4
MSTRG.8041 Avicennia marina HOM05D003968 ORTHO05D004077 4.7e-21 105.5 234 37.6
Duzib052G1223 Durio zibethinus HOM05D003968 ORTHO05D004077 4.7e-21 105.5 231 39.4
vmacro22632 Vaccinium macrocarpon HOM05D003968 ORTHO05D004077 8.1e-21 104.8 228 38.6
Eucgr.H03380 Eucalyptus grandis HOM05D003968 ORTHO05D004077 1.1e-20 104.4 220 38.6
arahy.Tifrunner.gnm1.ann1.GKU1A2 Arachis hypogaea HOM05D003968 ORTHO05D004077 1.4e-20 104.0 246 39.0
Ciclev10032280m.g Citrus clementina HOM05D003968 ORTHO05D004077 1.4e-20 104.0 218 37.6
GSVIVG01000957001 Vitis vinifera HOM05D003968 ORTHO05D004077 1.4e-20 104.0 216 39.4
TWI18G0914 Tripterygium wilfordii HOM05D003968 ORTHO05D004077 1.8e-20 103.6 219 36.1
Hma1.2p1_0459F.1_g157230 Hydrangea macrophylla HOM05D003968 ORTHO05D004077 2.4e-20 103.2 230 37.0
TAR629G0662 Trochodendron aralioides HOM05D003968 ORTHO05D004077 2.4e-20 103.2 213 39.0
Duzib248G0844 Durio zibethinus HOM05D003968 ORTHO05D004077 5.3e-20 102.1 222 38.7
arahy.Tifrunner.gnm1.ann1.25I2B1 Arachis hypogaea HOM05D003968 ORTHO05D004077 9.0e-20 101.3 239 38.5
THA.LOC104820530 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.2e-19 100.9 217 35.9
Glyma.18G302000 Glycine max HOM05D003968 ORTHO05D004077 1.5e-19 100.5 227 37.9
Gohir.D12G145000 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.0e-19 100.1 233 38.2
FAN12G2512 Fragaria x ananassa HOM05D003968 ORTHO05D004077 2.6e-19 99.8 240 35.8
Gohir.A12G140400 Gossypium hirsutum HOM05D003968 ORTHO05D004077 2.6e-19 99.8 235 37.9
Gorai.008G156400 Gossypium raimondii HOM05D003968 ORTHO05D004077 3.4e-19 99.4 234 38.0
Thecc.02G196200 Theobroma cacao HOM05D003968 ORTHO05D004077 4.4e-19 99.0 229 38.4
THA.LOC104814203 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 7.6e-19 98.2 211 38.9
Rhsim12G0020700 Rhododendron simsii HOM05D003968 ORTHO05D004077 9.9e-19 97.8 196 38.3
FvH4_4g23070 Fragaria vesca HOM05D003968 ORTHO05D004077 2.2e-18 96.7 242 36.0
MBI07_g37482_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 2.2e-18 96.7 221 35.7
BraA05t20145Z Brassica rapa HOM05D003968 ORTHO05D004077 4.9e-18 95.5 230 35.2
Peaxi162Scf00758g00054 Petunia axillaris HOM05D003968 ORTHO05D004077 6.4e-18 95.1 228 36.8
Prupe.1G219000 Prunus persica HOM05D003968 ORTHO05D004077 1.9e-17 93.6 254 33.1
Nn3g16325 Nelumbo nucifera HOM05D003968 ORTHO05D004077 2.4e-17 93.2 222 36.5
CDE02G3264 Ceratophyllum demersum HOM05D003278 ORTHO05D003738 3.2e-17 92.8 207 35.7
MD16G1126900 Malus domestica HOM05D003968 ORTHO05D004077 4.2e-17 92.4 237 34.6
Lsat_1_v5_gn_8_147160 Lactuca sativa HOM05D003968 ORTHO05D004077 9.3e-17 91.3 270 33.0
SalBow2G1659 Salvia bowleyana HOM05D003968 ORTHO05D004077 9.3e-17 91.3 241 34.0
Sc11g0000210 Simmondsia chinensis HOM05D003968 ORTHO05D004077 9.3e-17 91.3 247 32.0
Cpa.g.sc123.52 Carica papaya HOM05D003968 ORTHO05D004077 1.6e-16 90.5 235 34.0
CDE06G0253 Ceratophyllum demersum HOM05D003968 ORTHO05D004077 1.6e-16 90.5 208 34.6
DCAR_024638 Daucus carota HOM05D003968 ORTHO05D004077 1.6e-16 90.5 262 32.1
Medtr7g005500 Medicago truncatula HOM05D003968 ORTHO05D004077 1.6e-16 90.5 220 35.0
CARHR127520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.1e-16 90.1 220 35.0
MD13G1126400 Malus domestica HOM05D003968 ORTHO05D004077 2.1e-16 90.1 229 35.4
BolC4t27780H Brassica oleracea HOM05D003968 ORTHO05D004077 2.7e-16 89.7 232 35.8
Sed0024018 Sechium edule HOM05D003968 ORTHO05D004077 2.7e-16 89.7 222 36.0
Lalb_Chr04g0257091 Lupinus albus HOM05D003968 ORTHO05D004077 3.5e-16 89.4 218 37.2
AL4G29180 Arabidopsis lyrata HOM05D003968 ORTHO05D004077 4.6e-16 89.0 218 35.8
Lj6C835T0 Lonicera japonica HOM05D003968 ORTHO05D004077 4.6e-16 89.0 201 37.3
Migut.K01036 Erythranthe guttata HOM05D003968 ORTHO05D004077 6.0e-16 88.6 234 34.2
Thhalv10017284m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 7.8e-16 88.2 221 35.3
HanXRQChr08g0210131 Helianthus annuus HOM05D003968 ORTHO05D004077 7.8e-16 88.2 239 33.1
Lj1g0012774 Lotus japonicus HOM05D003968 ORTHO05D004077 7.8e-16 88.2 214 34.1
Aa31LG9G13440 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.0e-15 87.8 223 34.5
MSTRG.468 Avicennia marina HOM05D003968 ORTHO05D004077 1.7e-15 87.0 242 32.2
Actinidia22131 Actinidia chinensis HOM05D003968 ORTHO05D004077 2.3e-15 86.7 221 34.4
AT2G33510 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 2.3e-15 86.7 223 34.5
BcaC02g07799 Brassica carinata HOM05D003968 ORTHO05D004077 3.0e-15 86.3 232 33.6
Nn4g22193 Nelumbo nucifera HOM05D003968 ORTHO05D004077 3.0e-15 86.3 224 35.3
BolC4t23129H Brassica oleracea HOM05D003968 ORTHO05D004077 3.9e-15 85.9 233 33.5
A05p12030 Brassica napus HOM05D003968 ORTHO05D004077 6.6e-15 85.1 226 33.6
COL.COLO4_11740 Corchorus olitorius HOM05D003968 ORTHO05D004077 6.6e-15 85.1 236 33.9
Atru.chr11.2403 Acer truncatum HOM05D003968 ORTHO05D004077 8.7e-15 84.7 237 34.6
BcaB03g13960 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-14 84.3 214 32.7
BraA04t18084Z Brassica rapa HOM05D003968 ORTHO05D004077 1.5e-14 84.0 232 34.9
Carub.0004s1514 Capsella rubella HOM05D003968 ORTHO05D004077 1.5e-14 84.0 226 34.1
FAN07G1723 Fragaria x ananassa HOM05D003968 ORTHO05D004077 1.5e-14 84.0 242 34.7
unitig_747.g21116 Utricularia gibba HOM05D003968 ORTHO05D004077 1.5e-14 84.0 238 32.8
C04p63030 Brassica napus HOM05D003968 ORTHO05D004077 1.9e-14 83.6 232 33.6
ECA233G5077 Erigeron canadensis HOM05D003968 ORTHO05D004077 1.9e-14 83.6 231 33.3
BcaB02g10569 Brassica carinata HOM05D003968 ORTHO05D004077 2.5e-14 83.2 228 33.3
CANSAT56G0023 Cannabis sativa HOM05D003968 ORTHO05D004077 2.5e-14 83.2 247 33.2
Lalb_Chr14g0375131 Lupinus albus HOM05D003968 ORTHO05D004077 3.3e-14 82.8 216 35.6
BcaC02g11436 Brassica carinata HOM05D003968 ORTHO05D004077 9.6e-14 81.3 233 32.2
C04p15610 Brassica napus HOM05D003968 ORTHO05D004077 9.6e-14 81.3 233 32.2
Psat0s2399g0040 Pisum sativum HOM05D003968 ORTHO05D004077 9.6e-14 81.3 225 33.3
A07p11490 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-13 80.9 212 32.1
BraA07t28938Z Brassica rapa HOM05D003968 ORTHO05D004077 1.3e-13 80.9 212 32.1
HanXRQChr12g0362341 Helianthus annuus HOM05D003968 ORTHO05D004077 1.6e-13 80.5 222 32.0
Ah.02g131150 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.8e-13 79.7 248 31.9
BcaC01g05837 Brassica carinata HOM05D003968 ORTHO05D004077 2.8e-13 79.7 217 34.1
C03p21930 Brassica napus HOM05D003968 ORTHO05D004077 2.8e-13 79.7 217 34.1
MELO3C022347.2 Cucumis melo HOM05D003968 ORTHO05D004077 2.8e-13 79.7 223 33.2
A04p25820 Brassica napus HOM05D003968 ORTHO05D004077 4.8e-13 79.0 232 31.9
unitig_749.g13321 Utricularia gibba HOM05D003968 ORTHO05D004077 4.8e-13 79.0 223 31.8
A03p18770 Brassica napus HOM05D003968 ORTHO05D004077 6.2e-13 78.6 217 32.3
Sp4g15850 Schrenkiella parvula HOM05D003968 ORTHO05D004077 8.1e-13 78.2 223 33.2
BcaB01g03931 Brassica carinata HOM05D003968 ORTHO05D004077 1.1e-12 77.8 217 33.2
CAN.G1277.6 Capsicum annuum HOM05D003968 ORTHO05D004077 1.4e-12 77.4 226 33.2
BcaB06g28694 Brassica carinata HOM05D003968 ORTHO05D004077 2.4e-12 76.6 235 31.1
BraA03t11137Z Brassica rapa HOM05D003968 ORTHO05D004077 3.1e-12 76.3 217 32.3
CsaV3_6G007850 Cucumis sativus L. HOM05D003968 ORTHO05D004077 5.3e-12 75.5 221 33.5
Lsat_1_v5_gn_4_1260 Lactuca sativa HOM05D003968 ORTHO05D004077 5.3e-12 75.5 213 33.3
ClCG07G011730 Citrullus lanatus HOM05D003968 ORTHO05D004077 9.0e-12 74.7 237 32.1
THA.LOC104812600 Tarenaya hassleriana HOM05D003968 ORTHO05D004077 1.5e-11 73.9 209 34.9
ClCG06G001810 Citrullus lanatus HOM05D003968 ORTHO05D004077 2.0e-11 73.6 226 32.3
Solyc01g009770.3 Solanum lycopersicum HOM05D003968 ORTHO05D004077 2.0e-11 73.6 237 30.4
Ah.03g135740 Amaranthus hybridus HOM05D003968 ORTHO05D004077 2.6e-11 73.2 255 30.6
unitig_26.g10423 Utricularia gibba HOM05D003968 ORTHO05D004077 3.4e-11 72.8 166 34.9
Aqoxy5G03211 Aquilegia oxysepala HOM05D003968 ORTHO05D004077 5.8e-11 72.0 227 31.3
MBI11_g37080_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 5.8e-11 72.0 148 34.5
TAR622G0782 Trochodendron aralioides HOM05D003968 ORTHO05D004077 5.8e-11 72.0 208 34.1
Hund25497 Selenicereus undatus HOM05D003968 ORTHO05D004077 7.6e-11 71.6 239 29.3
AT1G28070 Arabidopsis thaliana HOM05D003968 ORTHO05D004077 9.9e-11 71.2 219 29.2
PSO017G3780 Papaver somniferum HOM05D003968 ORTHO05D004077 9.9e-11 71.2 233 30.5
PSO478G1150 Papaver somniferum HOM05D003968 ORTHO05D004077 9.9e-11 71.2 233 30.5
ATR0582G076 Amborella trichopoda HOM05D003968 ORTHO05D004077 2.2e-10 70.1 213 31.5
Cc11_g17440 Coffea canephora HOM05D003968 ORTHO05D004077 2.2e-10 70.1 258 29.1
CARHR027520 Cardamine hirsuta HOM05D003968 ORTHO05D004077 2.9e-10 69.7 217 30.0
TPR.G15634 Trifolium pratense HOM05D003968 ORTHO05D004077 2.9e-10 69.7 221 32.1
Sopen01g005310 Solanum pennellii HOM05D003968 ORTHO05D004077 3.8e-10 69.3 243 28.8
Aa31sc415G10 Aethionema arabicum HOM05D003968 ORTHO05D004077 1.1e-09 67.8 221 29.9
Sp1g24250 Schrenkiella parvula HOM05D003968 ORTHO05D004077 1.1e-09 67.8 216 31.9
Oeu019428.1 Olea europaea HOM05D003968 ORTHO05D004077 1.4e-09 67.4 208 31.7
Carub.0001s2650 Capsella rubella HOM05D003968 ORTHO05D004077 2.4e-09 66.6 213 30.0
PGSC0003DMG400030000 Solanum tuberosum HOM05D003968 ORTHO05D004077 2.4e-09 66.6 233 28.3
BraA08t34544Z Brassica rapa HOM05D003968 ORTHO05D004077 5.4e-09 65.5 213 30.0
Thhalv10008849m.g Eutrema salsugineum HOM05D003968 ORTHO05D004077 9.3e-09 64.7 224 30.4
BcaC06g35328 Brassica carinata HOM05D003968 ORTHO05D004077 1.2e-08 64.3 212 28.3
C07p17340 Brassica napus HOM05D003968 ORTHO05D004077 1.2e-08 64.3 212 28.3
BolC7t42238H Brassica oleracea HOM05D003968 ORTHO05D004077 1.2e-08 64.3 212 28.3
CsaV3_4G002470 Cucumis sativus L. HOM05D003968 ORTHO05D004077 1.2e-08 64.3 229 30.6
SGA_v2.0_scaffold80G25944 Striga asiatica HOM05D003968 ORTHO05D004077 4.6e-08 62.4 148 33.1
PSO229G0040 Papaver somniferum HOM05D003968 ORTHO05D004077 7.9e-08 61.6 201 29.9
A08p25930 Brassica napus HOM05D003968 ORTHO05D004077 1.3e-07 60.8 213 27.7
BolC3t19720H Brassica oleracea HOM05D003968 ORTHO05D004077 1.3e-07 60.8 213 30.0
PSO675G4434 Papaver somniferum HOM05D003968 ORTHO05D004077 3.9e-07 59.3 203 29.1
Sed0012192 Sechium edule HOM05D003968 ORTHO05D004077 3.9e-07 59.3 219 30.6
BcaC01g00004 Brassica carinata HOM05D003968 ORTHO05D004077 6.7e-07 58.5 213 29.1
MBI01_g34379_MAGBIO Magnolia biondii HOM05D003968 ORTHO05D004077 6.7e-07 58.5 77 48.1
BcaC05g26810 Brassica carinata HOM05D003968 ORTHO05D004077 1.5e-06 57.4 164 29.3
MELO3C017796.2 Cucumis melo HOM05D003968 ORTHO05D004077 1.5e-06 57.4 236 29.2
C03p74720 Brassica napus HOM05D003968 ORTHO05D004077 3.3e-06 56.2 213 27.7


User provided reference genes

Program Settings