Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 1.9e-187 659.1 334 100.0
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 3.6e-183 644.8 334 97.9
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 2.9e-148 528.9 355 74.4
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 6.5e-140 501.1 334 73.1
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 4.8e-135 485.0 437 58.8
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 3.1e-134 482.3 289 76.8
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 5.3e-134 481.5 285 78.2
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 2.0e-133 479.6 286 76.9
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 5.8e-133 478.0 290 76.6
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 2.9e-132 475.7 283 77.7
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 4.2e-131 471.9 289 75.1
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 5.5e-131 471.5 281 77.9
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 1.6e-130 469.9 283 75.3
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 4.6e-130 468.4 325 68.9
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 6.1e-130 468.0 283 74.9
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 7.9e-130 467.6 286 74.8
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 7.9e-130 467.6 283 74.9
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 1.3e-129 466.8 280 76.8
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 3.0e-129 465.7 286 76.6
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 6.7e-129 464.5 280 76.1
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 8.7e-129 464.2 286 76.2
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 8.7e-129 464.2 286 75.9
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 1.9e-128 463.0 291 75.9
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 1.9e-128 463.0 284 77.8
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 3.3e-128 462.2 338 68.6
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 4.3e-128 461.8 279 76.7
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 4.3e-128 461.8 336 68.2
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 9.7e-128 460.7 334 68.6
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.3e-127 460.3 333 68.2
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.8e-127 459.1 286 75.5
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.7e-127 458.8 291 72.2
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.1e-126 457.2 301 70.4
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 1.4e-126 456.8 274 76.6
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 2.0e-125 453.0 283 76.0
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 2.6e-125 452.6 288 73.6
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 7.7e-125 451.1 289 74.0
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 3.8e-124 448.7 303 70.0
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 3.8e-124 448.7 277 75.8
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 6.5e-124 448.0 290 71.7
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 1.4e-123 446.8 281 74.4
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 1.9e-123 446.4 316 67.4
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 4.2e-123 445.3 283 74.2
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 5.5e-123 444.9 291 72.5
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 7.2e-123 444.5 284 72.5
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 1.6e-122 443.4 312 67.6
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 1.6e-122 443.4 276 74.6
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 2.1e-122 443.0 282 73.4
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 4.6e-122 441.8 288 72.6
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 4.6e-122 441.8 282 73.4
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 3.9e-121 438.7 290 73.1
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.1e-120 437.2 285 72.6
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 3.3e-120 435.6 285 72.3
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 7.4e-120 434.5 281 72.2
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 3.7e-119 432.2 281 72.2
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 8.2e-119 431.0 285 71.9
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 5.3e-118 428.3 287 70.0
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 9.1e-118 427.6 285 70.9
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 2.6e-117 426.0 284 71.1
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 3.4e-117 425.6 290 68.3
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 1.3e-116 423.7 293 70.0
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 2.2e-116 422.9 283 70.3
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 5.0e-116 421.8 275 70.5
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 5.0e-116 421.8 301 66.8
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 5.5e-115 418.3 284 69.0
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 1.6e-114 416.8 341 62.2
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 3.6e-114 415.6 287 70.0
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 4.7e-114 415.2 288 70.1
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 6.1e-114 414.8 282 68.8
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 1.8e-113 413.3 282 68.1
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 2.3e-113 412.9 330 63.0
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 3.0e-113 412.5 286 68.9
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 3.3e-112 409.1 318 64.2
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 3.3e-112 409.1 288 69.4
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 4.4e-112 408.7 291 67.7
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 1.3e-111 407.1 309 65.0
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 9.1e-110 401.0 277 69.7
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 2.0e-109 399.8 277 70.8
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.6e-104 382.9 277 65.7
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 3.1e-102 375.9 288 62.2
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 8.5e-100 367.9 323 59.4
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 3.0e-97 359.4 292 58.2
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 2.6e-96 356.3 299 55.5
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 3.4e-96 355.9 289 58.5
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 1.8e-94 350.1 249 67.9
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 1.6e-93 347.1 301 54.2
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 1.1e-86 324.3 275 56.7
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 8.6e-84 314.7 180 83.9
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 3.6e-82 309.3 224 67.9
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 3.0e-81 306.2 171 82.5
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 3.2e-78 296.2 214 66.8
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 3.5e-77 292.7 217 65.0
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 5.6e-75 285.4 167 80.2
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 2.0e-72 276.9 162 78.4
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 2.0e-72 276.9 162 78.4
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 6.6e-68 261.9 271 52.4
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 9.5e-67 258.1 279 44.8
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 1.4e-65 254.2 179 65.4
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 2.9e-63 246.5 283 41.7
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 1.6e-61 240.7 290 43.8
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 2.3e-57 226.9 163 66.3
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 3.5e-53 213.0 122 78.7
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 4.3e-51 206.1 170 60.6
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 1.9e-35 154.1 73 86.3
PRCOL_00000683 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 4.0e-33 146.4 283 35.0
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 3.8e-31 139.8 81 74.1
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 6.4e-31 139.0 323 30.7
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 7.9e-29 132.1 335 28.4
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 5.1e-28 129.4 60 93.3
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 1.3e-23 114.8 78 64.1
HPP92_025520 Vanilla planifolia HOM05D006927 ORTHO05D009065 7.1e-22 109.0 155 43.9
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 6.0e-21 105.9 136 44.9
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 3.9e-12 76.6 262 24.4
CBR_g4745 Chara braunii HOM05D000019 ORTHO05D000002 3.3e-11 73.6 68 47.1
PRCOL_00002844 Prasinoderma coloniale HOM05D006927 ORTHO05D049054 3.7e-10 70.1 131 34.4
MCO12G090 Micromonas commoda HOM05D006927 ORTHO05D049054 3.1e-09 67.0 335 23.9
Actinidia31734 Actinidia chinensis HOM05D006927 ORTHO05D056651 6.9e-09 65.9 113 46.9
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 4.5e-08 63.2 160 31.2


User provided reference genes

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