Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.8e-224 781.2 398 100.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 3.8e-224 781.2 398 100.0
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 7.6e-188 660.6 396 82.1
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 4.2e-186 654.8 397 80.6
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.9e-181 637.5 397 78.8
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.5e-175 619.8 387 78.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.9e-175 619.4 386 79.3
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.3e-174 616.7 386 79.3
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 2.4e-173 612.5 389 78.7
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 3.1e-173 612.1 386 78.8
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 9.0e-173 610.5 386 78.5
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 9.0e-173 610.5 386 78.2
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 1.2e-172 610.1 386 78.0
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.6e-172 609.0 386 78.8
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.8e-171 605.1 386 78.8
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 6.4e-171 604.4 387 77.3
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 8.4e-171 604.0 386 78.0
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 8.4e-171 604.0 386 78.0
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.4e-170 603.2 386 78.0
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.9e-170 602.8 396 74.5
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 4.2e-170 601.7 383 78.3
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 5.5e-170 601.3 396 74.5
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.3e-170 600.5 387 74.9
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.3e-170 600.5 387 76.0
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 2.1e-169 599.4 393 77.1
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.1e-169 599.4 393 75.1
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 2.1e-169 599.4 396 74.2
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 7.9e-169 597.4 386 75.4
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 1.3e-168 596.7 386 76.4
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.9e-168 595.1 387 76.0
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 3.9e-168 595.1 386 74.6
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 8.7e-168 594.0 383 76.8
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-167 593.6 386 74.6
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.1e-167 593.6 380 77.4
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 4.3e-167 591.7 386 74.9
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 5.6e-167 591.3 379 78.1
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 5.6e-167 591.3 370 77.6
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.6e-166 589.7 395 72.9
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 2.1e-166 589.3 382 77.0
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 2.4e-165 585.9 381 76.6
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.4e-165 585.9 377 77.5
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 4.0e-165 585.1 386 74.4
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 4.0e-165 585.1 380 77.6
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 9.0e-165 583.9 393 73.5
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.6e-164 582.4 379 76.8
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.9e-163 578.9 385 74.5
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 2.9e-163 578.9 383 74.7
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 3.8e-163 578.6 387 73.1
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.1e-162 577.0 386 72.5
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.4e-162 576.6 383 74.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 1.2e-161 573.5 386 72.3
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 2.7e-161 572.4 376 74.7
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 6.1e-161 571.2 382 75.9
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.0e-160 570.5 378 75.1
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 1.8e-160 569.7 389 72.8
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.3e-160 569.3 376 73.4
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 3.9e-160 568.5 383 72.3
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.3e-159 565.5 379 72.6
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 4.3e-159 565.1 382 71.7
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 7.4e-159 564.3 384 70.8
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 9.7e-159 563.9 383 71.3
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.6e-158 563.1 379 72.3
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 2.8e-158 562.4 382 73.6
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 2.8e-158 562.4 382 73.6
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 2.8e-158 562.4 382 73.6
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.8e-158 562.4 385 72.2
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 3.7e-158 562.0 384 70.3
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.7e-158 562.0 378 72.2
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 4.8e-158 561.6 382 73.8
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 1.1e-157 560.5 383 73.4
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-157 560.5 385 72.5
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.1e-157 560.5 382 73.3
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 1.4e-157 560.1 380 74.7
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.8e-157 559.7 383 72.8
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 3.1e-157 558.9 383 72.6
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 3.1e-157 558.9 380 73.4
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 9.0e-157 557.4 383 72.1
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 2.0e-156 556.2 383 71.8
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 2.0e-156 556.2 383 71.8
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 2.0e-156 556.2 383 71.8
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.6e-156 555.8 382 72.8
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 4.5e-156 555.1 377 74.0
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 4.5e-156 555.1 383 71.8
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 1.3e-155 553.5 384 71.9
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.7e-155 553.1 384 72.4
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 3.8e-155 552.0 384 71.6
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 8.5e-155 550.8 384 71.4
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.5e-154 549.3 384 71.4
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.5e-154 549.3 383 71.3
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 9.4e-154 547.4 384 70.8
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.1e-151 540.4 365 72.6
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 3.3e-151 538.9 380 69.2
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 4.3e-151 538.5 383 67.6
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 5.7e-151 538.1 386 68.1
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 3.7e-150 535.4 383 68.1
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 4.8e-150 535.0 385 69.6
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 4.8e-150 535.0 383 66.8
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 6.3e-150 534.6 368 72.0
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 8.2e-150 534.3 385 70.6
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.8e-149 533.1 383 67.6
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 2.4e-149 532.7 386 65.8
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 3.1e-149 532.3 385 67.3
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 6.9e-149 531.2 385 67.0
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 9.1e-149 530.8 383 67.4
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 9.1e-149 530.8 393 66.4
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.2e-148 530.4 380 68.2
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.6e-148 529.3 380 66.6
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 4.5e-148 528.5 383 67.1
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 7.7e-148 527.7 382 67.0
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 5.0e-147 525.0 362 71.5
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.9e-146 523.1 378 66.7
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 2.5e-146 522.7 383 66.3
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 2.7e-145 519.2 390 67.4
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.7e-145 519.2 394 63.7
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 7.9e-145 517.7 383 65.0
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 7.7e-140 501.1 324 75.6
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 5.0e-139 498.4 390 62.3
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.1e-137 493.0 385 61.0
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 4.4e-135 485.3 382 61.5
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 3.8e-131 472.2 377 62.1
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 7.0e-125 451.4 326 67.5
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.9e-123 446.0 383 58.2
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.2e-119 434.1 288 73.3
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.0e-115 421.0 383 55.6
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 6.6e-107 391.7 385 53.8
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 8.3e-102 374.8 390 48.5
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.2e-97 360.9 378 46.6
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 2.8e-97 359.8 406 46.3
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 5.2e-96 355.5 227 79.3
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.7e-86 323.9 429 40.3
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.3e-83 313.5 204 72.1
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 2.8e-81 306.6 426 38.5
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 2.6e-71 273.5 193 67.9
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 6.4e-62 242.3 180 69.4
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 6.9e-56 222.2 155 73.5
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 1.4e-53 214.5 173 60.1
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 1.2e-44 184.9 157 58.6
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 2.5e-37 160.6 108 70.4
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 1.8e-32 144.4 97 71.1
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 1.1e-29 135.2 150 52.0
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.4e-18 96.7 50 84.0
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 8.2e-17 92.4 71 62.0
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.6e-07 61.6 45 62.2
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 2.0e-07 61.2 46 58.7
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 4.5e-07 60.1 50 52.0
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.0e-06 58.9 46 54.3
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 2.2e-06 57.8 49 57.1


User provided reference genes

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