Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031853 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 1.3e-141 508.4 262 100.0
CSS0045653 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 8.4e-138 495.7 262 96.2
Actinidia07859 Actinidia chinensis HOM05D005764 ORTHO05D006600 2.2e-90 338.2 274 65.3
Rhsim06G0177300 Rhododendron simsii HOM05D005764 ORTHO05D006600 7.2e-89 333.2 264 64.4
vmacro12075 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 8.8e-87 326.2 264 64.4
Dinv21306 Davidia involucrata HOM05D005764 ORTHO05D006600 1.8e-79 302.0 271 59.8
Lj1C797T15 Lonicera japonica HOM05D005764 ORTHO05D006600 4.0e-63 247.7 249 53.0
Lj1C797T16 Lonicera japonica HOM05D005764 ORTHO05D006600 4.0e-63 247.7 249 53.0
Cfa014216 Carpinus fangiana HOM05D005764 ORTHO05D006600 2.2e-61 241.9 269 48.7
GSVIVG01030107001 Vitis vinifera HOM05D005764 ORTHO05D006600 1.4e-60 239.2 264 52.3
Haze_12617 Corylus avellana HOM05D005764 ORTHO05D006600 2.1e-59 235.3 269 47.6
Haze_12606 Corylus avellana HOM05D005764 ORTHO05D006600 1.3e-58 232.6 269 47.2
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 5.1e-58 230.7 271 47.2
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 4.0e-55 221.1 238 48.3
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 1.2e-54 219.5 236 49.6
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 3.2e-52 211.5 263 44.9
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 1.2e-51 209.5 270 44.4
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.2e-51 209.5 235 45.5
TAR633G1425 Trochodendron aralioides HOM05D005764 ORTHO05D006600 1.3e-50 206.1 242 48.8
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 3.0e-50 204.9 248 46.0
PSO017G0179 Papaver somniferum HOM05D005764 ORTHO05D006600 3.9e-50 204.5 246 43.9
QL04p061529 Quercus lobata HOM05D005764 ORTHO05D006600 3.9e-50 204.5 266 43.2
Manes.06G126050 Manihot esculenta HOM05D005764 ORTHO05D006600 1.1e-49 203.0 246 45.5
Cpa.g.sc211.34 Carica papaya HOM05D005764 ORTHO05D006600 1.9e-49 202.2 278 41.4
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 2.1e-48 198.7 234 43.6
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.8e-48 198.4 235 43.4
Thecc.01G197100 Theobroma cacao HOM05D005764 ORTHO05D006600 3.6e-48 198.0 267 40.1
Dinv18433 Davidia involucrata HOM05D005764 ORTHO05D006600 3.1e-47 194.9 217 49.3
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 5.8e-46 190.7 260 40.4
Atru.chr6.3404 Acer truncatum HOM05D005764 ORTHO05D006600 7.6e-46 190.3 255 43.1
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 1.1e-44 186.4 241 41.1
Ciclev10010938m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.9e-44 185.7 258 43.4
Rhsim08G0196300 Rhododendron simsii HOM05D005764 ORTHO05D006600 3.2e-44 184.9 223 44.4
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 4.2e-44 184.5 217 46.1
QL11p027136 Quercus lobata HOM05D005764 ORTHO05D006600 4.2e-44 184.5 254 44.9
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 4.2e-44 184.5 252 41.3
Atru.chr6.1906 Acer truncatum HOM05D005764 ORTHO05D006600 7.1e-44 183.7 245 43.7
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 2.7e-43 181.8 219 45.2
Potri.015G105400 Populus trichocarpa HOM05D005764 ORTHO05D006600 3.5e-43 181.4 245 42.9
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 3.5e-43 181.4 219 45.2
Sed0013038 Sechium edule HOM05D005764 ORTHO05D006600 4.6e-43 181.0 230 41.7
CAN.G177.15 Capsicum annuum HOM05D005764 ORTHO05D006600 6.0e-43 180.6 252 40.1
Sc04g0000230 Simmondsia chinensis HOM05D005764 ORTHO05D006600 6.0e-43 180.6 239 42.7
HanXRQChr03g0075031 Helianthus annuus HOM05D005764 ORTHO05D006600 1.3e-42 179.5 238 42.0
PGSC0003DMG400017401 Solanum tuberosum HOM05D005764 ORTHO05D006600 8.7e-42 176.8 228 41.2
Sopen07g023950 Solanum pennellii HOM05D005764 ORTHO05D006600 1.5e-41 176.0 226 42.0
Aqoxy7G02956 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 4.3e-41 174.5 260 40.0
ClCG02G014020 Citrullus lanatus HOM05D005764 ORTHO05D006600 7.3e-41 173.7 229 40.6
Lsat_1_v5_gn_9_103540 Lactuca sativa HOM05D005764 ORTHO05D006600 7.3e-41 173.7 245 40.0
Oeu005567.3 Olea europaea HOM05D005764 ORTHO05D006600 1.6e-40 172.6 258 38.4
RcHm_v2.0_Chr7g0188811 Rosa chinensis HOM05D005764 ORTHO05D006600 1.6e-40 172.6 257 39.3
Ah.11g046810 Amaranthus hybridus HOM05D005764 ORTHO05D006600 2.1e-40 172.2 229 44.1
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 3.6e-40 171.4 251 39.0
ATR0317G130 Amborella trichopoda HOM05D005764 ORTHO05D006600 4.7e-40 171.0 240 38.3
Lj1A1039T30 Lonicera japonica HOM05D005764 ORTHO05D006600 4.7e-40 171.0 219 44.3
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 1.8e-39 169.1 247 41.7
FvH4_5g09340 Fragaria vesca HOM05D005764 ORTHO05D006600 4.0e-39 167.9 253 38.7
Gorai.003G116400 Gossypium raimondii HOM05D005764 ORTHO05D006600 9.0e-39 166.8 250 40.0
FAN18G2453 Fragaria x ananassa HOM05D005764 ORTHO05D006600 1.5e-38 166.0 253 38.3
MD14G1148300 Malus domestica HOM05D005764 ORTHO05D006600 2.0e-38 165.6 234 38.9
vmacro19173 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.6e-38 165.2 247 39.7
AUR62009526 Chenopodium quinoa HOM05D005764 ORTHO05D006600 3.4e-38 164.9 207 45.4
CsaV3_5G006140 Cucumis sativus L. HOM05D005764 ORTHO05D006600 5.8e-38 164.1 232 38.4
AUR62034761 Chenopodium quinoa HOM05D005764 ORTHO05D006600 9.9e-38 163.3 205 45.4
AUR62041690 Chenopodium quinoa HOM05D005764 ORTHO05D006600 9.9e-38 163.3 205 45.4
Gohir.D03G110000 Gossypium hirsutum HOM05D005764 ORTHO05D006600 1.3e-37 162.9 251 39.4
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.7e-37 162.5 234 38.9
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 2.2e-37 162.2 243 39.5
PGR042G2810 Punica granatum HOM05D005764 ORTHO05D006600 8.4e-37 160.2 223 38.6
SGA_v2.0_scaffold74G24732 Striga asiatica HOM05D005764 ORTHO05D006600 8.4e-37 160.2 266 37.6
DCAR_016460 Daucus carota HOM05D005764 ORTHO05D006600 1.9e-36 159.1 238 39.9
Migut.I00614 Erythranthe guttata HOM05D005764 ORTHO05D006600 1.9e-36 159.1 250 38.4
Ciclev10033858m.g Citrus clementina HOM05D005764 ORTHO05D006600 5.4e-36 157.5 204 45.6
vmacro19172 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.6e-35 156.0 212 42.5
EL10Ac5g11299 Beta vulgaris HOM05D005764 ORTHO05D006600 4.6e-35 154.5 203 42.9
THA.LOC104804672 Tarenaya hassleriana HOM05D005764 ORTHO05D006600 6.6e-34 150.6 228 37.7
QL04p006829 Quercus lobata HOM05D000056 ORTHO05D000019 1.3e-32 146.4 210 43.8
Aa31LG11G1530 Aethionema arabicum HOM05D005764 ORTHO05D006600 2.1e-32 145.6 255 37.3
Duzib205G1181 Durio zibethinus HOM05D005764 ORTHO05D006600 4.0e-31 141.4 195 43.1
Prupe.5G142900 Prunus persica HOM05D005764 ORTHO05D006600 9.0e-31 140.2 233 36.9
CARHR275790 Cardamine hirsuta HOM05D005764 ORTHO05D006600 1.5e-30 139.4 246 37.0
Lsat_1_v5_gn_4_84661 Lactuca sativa HOM05D005764 ORTHO05D006600 1.5e-30 139.4 235 35.7
HanXRQChr09g0273911 Helianthus annuus HOM05D005764 ORTHO05D006600 7.6e-30 137.1 204 40.7
Atru.chr6.3419 Acer truncatum HOM05D005764 ORTHO05D006600 2.9e-29 135.2 261 34.5
Gohir.A03G056500 Gossypium hirsutum HOM05D005764 ORTHO05D006600 3.8e-29 134.8 226 38.1
Sp2g25170 Schrenkiella parvula HOM05D005764 ORTHO05D006600 2.4e-28 132.1 223 34.5
Atru.chr1.4150 Acer truncatum HOM05D005764 ORTHO05D006600 3.2e-28 131.7 196 40.3
Thhalv10003592m.g Eutrema salsugineum HOM05D005764 ORTHO05D006600 5.4e-28 131.0 222 35.6
BcaB02g09611 Brassica carinata HOM05D005764 ORTHO05D006600 2.1e-27 129.0 228 36.4
Atru.chr6.3407 Acer truncatum HOM05D005764 ORTHO05D006600 4.6e-27 127.9 263 33.8
AL8G38750 Arabidopsis lyrata HOM05D005764 ORTHO05D006600 1.0e-26 126.7 230 37.0
Actinidia25528 Actinidia chinensis HOM05D005764 ORTHO05D006600 3.9e-26 124.8 152 44.1
ECA240G4054 Erigeron canadensis HOM05D005764 ORTHO05D006600 6.7e-26 124.0 156 44.2
Carub.0008s2268 Capsella rubella HOM05D005764 ORTHO05D006600 1.9e-25 122.5 227 34.4
Solyc07g045400.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 1.3e-24 119.8 174 39.1
Ciclev10014235m.g Citrus clementina HOM05D005764 ORTHO05D006600 1.6e-24 119.4 171 40.4
BolC3t18765H Brassica oleracea HOM05D005764 ORTHO05D006600 3.7e-24 118.2 218 35.3
C03p65110 Brassica napus HOM05D005764 ORTHO05D006600 4.8e-24 117.9 218 35.3
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 4.8e-24 117.9 230 33.0
AT5G61990 Arabidopsis thaliana HOM05D005764 ORTHO05D006600 6.2e-24 117.5 246 31.7
CiPaw.11G052700 Carya illinoinensis HOM05D005764 ORTHO05D006600 6.2e-24 117.5 116 50.9
CDE05G2510 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 6.2e-24 117.5 198 33.8
Nitab4.5_0006992g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 8.1e-24 117.1 97 55.7
Thecc.03G139200 Theobroma cacao HOM05D005764 ORTHO05D006600 8.1e-24 117.1 121 47.9
Nitab4.5_0005425g0010 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.1e-23 116.7 97 56.7
A06p28690 Brassica napus HOM05D005764 ORTHO05D006600 5.8e-22 110.9 209 34.9
BraA06t25809Z Brassica rapa HOM05D005764 ORTHO05D006600 5.8e-22 110.9 209 34.9
vmacro19171 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 2.2e-21 109.0 187 37.4
HanXRQChr16g0498891 Helianthus annuus HOM05D005764 ORTHO05D006600 8.4e-21 107.1 237 30.8
CAN.G805.2 Capsicum annuum HOM05D005764 ORTHO05D006600 3.3e-17 95.1 98 50.0
RcHm_v2.0_Chr2g0162681 Rosa chinensis HOM05D005764 ORTHO05D006600 1.3e-16 93.2 149 38.9
CDE02G2785 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 2.1e-16 92.4 245 25.7
CDE05G0348 Ceratophyllum demersum HOM05D005764 ORTHO05D006600 5.8e-14 84.3 166 31.9
ATR0317G133 Amborella trichopoda HOM05D005764 ORTHO05D006600 7.6e-14 84.0 107 39.3
ECA232G3323 Erigeron canadensis HOM05D005764 ORTHO05D006600 8.4e-13 80.5 111 36.9
ECA248G1009 Erigeron canadensis HOM05D005764 ORTHO05D006600 1.6e-11 76.3 92 44.6
MELO3C011746.2 Cucumis melo HOM05D005764 ORTHO05D006600 2.1e-11 75.9 120 33.3
SEGI_02979 Sequoiadendron giganteum HOM05D007551 ORTHO05D006600 3.5e-11 75.1 213 23.9
Actinidia09797 Actinidia chinensis HOM05D005764 ORTHO05D006600 1.8e-10 72.8 92 45.7
Peaxi162Scf00314g00530 Petunia axillaris HOM05D005764 ORTHO05D006600 1.8e-10 72.8 54 57.4
ECA232G4944 Erigeron canadensis HOM05D000422 ORTHO05D006600 3.0e-10 72.0 80 45.0
HPP92_025492 Vanilla planifolia HOM05D005764 ORTHO05D006600 3.9e-10 71.6 111 35.1
Aqoxy7G03003 Aquilegia oxysepala HOM05D005764 ORTHO05D006600 8.7e-10 70.5 92 37.0
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 1.9e-09 69.3 236 25.0
Sabra04G0011500 Salix brachista HOM05D007956 ORTHO05D010152 1.9e-09 69.3 235 23.8
Thecc.06G215000 Theobroma cacao HOM05D007956 ORTHO05D010152 1.9e-09 69.3 251 25.1
TAR629G0629 Trochodendron aralioides HOM05D007956 ORTHO05D010152 4.3e-09 68.2 237 24.1
Duzib235G1205 Durio zibethinus HOM05D007956 ORTHO05D010152 7.4e-09 67.4 250 24.4
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 1.3e-08 66.6 253 26.9
Atru.chr6.215 Acer truncatum HOM05D001465 ORTHO05D006600 2.2e-08 65.9 86 39.5
HPP92_025444 Vanilla planifolia HOM05D005764 ORTHO05D006600 2.2e-08 65.9 78 37.2
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 2.8e-08 65.5 243 21.8
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 3.7e-08 65.1 244 25.0
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 3.7e-08 65.1 232 25.4
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 4.8e-08 64.7 224 22.3
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 6.3e-08 64.3 244 24.6
Potri.004G020900 Populus trichocarpa HOM05D007956 ORTHO05D010152 6.3e-08 64.3 228 23.7
RcHm_v2.0_Chr1g0325241 Rosa chinensis HOM05D005764 ORTHO05D006600 6.3e-08 64.3 101 38.6
Gorai.009G176500 Gossypium raimondii HOM05D007956 ORTHO05D010152 8.2e-08 63.9 252 25.4
MSTRG.10708 Avicennia marina HOM05D007291 ORTHO05D009038 1.8e-07 62.8 228 24.6
Sp6g05780 Schrenkiella parvula HOM05D007750 ORTHO05D009803 1.8e-07 62.8 121 30.6
COL.COLO4_06641 Corchorus olitorius HOM05D007956 ORTHO05D010152 2.4e-07 62.4 242 25.2
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 2.4e-07 62.4 251 23.5
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 3.1e-07 62.0 245 22.9
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 3.1e-07 62.0 256 22.7
Eucgr.K02196 Eucalyptus grandis HOM05D005764 ORTHO05D006600 4.1e-07 61.6 81 40.7
Sabra15G0125700 Salix brachista HOM05D034324 ORTHO05D006600 6.9e-07 60.8 44 59.1
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 9.0e-07 60.5 223 22.9
TPR.G14066 Trifolium pratense HOM05D007358 ORTHO05D009117 1.2e-06 60.1 241 22.4
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 1.5e-06 59.7 224 23.2
SEGI_21982 Sequoiadendron giganteum HOM05D005764 ORTHO05D006600 2.0e-06 59.3 121 27.3
Solyc03g095200.1 Solanum lycopersicum HOM05D000104 ORTHO05D009920 2.0e-06 59.3 228 24.6
BcaB06g27361 Brassica carinata HOM05D006858 ORTHO05D008767 2.6e-06 58.9 236 24.6
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 2.6e-06 58.9 243 23.9
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 3.4e-06 58.5 110 26.4
CiPaw.09G087900 Carya illinoinensis HOM05D007956 ORTHO05D010152 4.5e-06 58.2 200 24.5
SEGI_33147 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 4.5e-06 58.2 124 32.3
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 4.5e-06 58.2 228 24.1
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 5.9e-06 57.8 236 22.9
CDE04G3788 Ceratophyllum demersum HOM05D007639 ORTHO05D009509 5.9e-06 57.8 103 33.0
DCAR_030120 Daucus carota HOM05D000424 ORTHO05D000355 5.9e-06 57.8 111 28.8
DCAR_030127 Daucus carota HOM05D000424 ORTHO05D000355 5.9e-06 57.8 111 28.8
Lalb_Chr24g0394951 Lupinus albus HOM05D007358 ORTHO05D009117 5.9e-06 57.8 239 22.2
RcHm_v2.0_Chr7g0229441 Rosa chinensis HOM05D005764 ORTHO05D006600 5.9e-06 57.8 105 34.3
AL1G60900 Arabidopsis lyrata HOM05D006819 ORTHO05D008763 7.7e-06 57.4 96 38.5
AL5G37300 Arabidopsis lyrata HOM05D007655 ORTHO05D009698 7.7e-06 57.4 103 28.2
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 7.7e-06 57.4 105 29.5
CSS0009024 Camellia sinensis var. sinensis HOM05D007956 ORTHO05D009038 7.7e-06 57.4 227 22.9
Cc08_g01370 Coffea canephora HOM05D008470 ORTHO05D010644 1.0e-05 57.0 112 31.2
Dinv21881 Davidia involucrata HOM05D000104 ORTHO05D009920 1.0e-05 57.0 116 31.9
Nitab4.5_0003030g0120 Nicotiana tabacum HOM05D000424 ORTHO05D000355 1.0e-05 57.0 104 30.8


User provided reference genes

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