Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031848 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 1.9e-81 305.8 161 100.0
CSS0037270 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 2.8e-64 248.8 171 81.9
CSS0031696 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 4.4e-62 241.5 166 81.3
CSS0045191 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 4.4e-62 241.5 166 81.3
CSS0047421 Camellia sinensis var. sinensis HOM05D003405 ORTHO05D003920 2.9e-45 185.7 162 69.8
TAR376G0111 Trochodendron aralioides HOM05D003405 ORTHO05D003920 7.1e-44 181.0 167 65.3
Dinv34758 Davidia involucrata HOM05D003405 ORTHO05D003920 1.0e-42 177.2 169 63.9
Actinidia09137 Actinidia chinensis HOM05D003405 ORTHO05D003920 1.3e-40 170.2 167 61.1
Dinv32930 Davidia involucrata HOM05D003405 ORTHO05D003920 4.8e-40 168.3 167 63.5
Hma1.2p1_0822F.1_g224510 Hydrangea macrophylla HOM05D003405 ORTHO05D003920 4.0e-39 165.2 171 58.5
SGA_v2.0_scaffold80G25931 Striga asiatica HOM05D003405 ORTHO05D003920 4.0e-39 165.2 169 56.8
GSVIVG01018880001 Vitis vinifera HOM05D003405 ORTHO05D003920 2.6e-38 162.5 166 56.6
Manes.12G078200 Manihot esculenta HOM05D003405 ORTHO05D003920 2.2e-37 159.5 167 54.5
DCAR_023249 Daucus carota HOM05D003405 ORTHO05D003920 1.1e-36 157.1 166 53.0
MBI16_g36844_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 2.5e-36 156.0 170 56.5
Duzib264G0139 Durio zibethinus HOM05D003405 ORTHO05D003920 5.5e-36 154.8 166 54.8
Lj9A413G54 Lonicera japonica HOM05D003405 ORTHO05D003920 1.2e-35 153.7 166 54.8
Gorai.012G034400 Gossypium raimondii HOM05D003405 ORTHO05D003920 2.7e-35 152.5 169 52.7
Potri.007G019833 Populus trichocarpa HOM05D003405 ORTHO05D003920 2.7e-35 152.5 168 52.4
Gohir.D04G022600 Gossypium hirsutum HOM05D003405 ORTHO05D003920 4.6e-35 151.8 169 52.1
Cpa.g.sc89.74 Carica papaya HOM05D003405 ORTHO05D003920 7.9e-35 151.0 167 54.5
Gohir.A05G385400 Gossypium hirsutum HOM05D003405 ORTHO05D003920 2.3e-34 149.4 169 51.5
CiPaw.07G051500 Carya illinoinensis HOM05D003405 ORTHO05D003920 3.9e-34 148.7 168 52.4
Potri.007G019601 Populus trichocarpa HOM05D003405 ORTHO05D003920 3.9e-34 148.7 168 51.2
Ciclev10004806m.g Citrus clementina HOM05D003405 ORTHO05D003920 1.9e-33 146.4 167 52.1
Migut.H00806 Erythranthe guttata HOM05D003405 ORTHO05D003920 2.5e-33 146.0 166 53.6
Manes.01G139900 Manihot esculenta HOM05D003405 ORTHO05D003920 3.3e-33 145.6 168 51.2
MBI02_g23715_MAGBIO Magnolia biondii HOM05D003405 ORTHO05D003920 5.7e-33 144.8 166 55.4
QL06p035199 Quercus lobata HOM05D003405 ORTHO05D003920 7.4e-33 144.4 167 52.1
MD14G1085200 Malus domestica HOM05D003405 ORTHO05D003920 9.7e-33 144.1 169 50.3
Solyc04g005330.3 Solanum lycopersicum HOM05D003405 ORTHO05D003920 2.2e-32 142.9 165 52.7
Thecc.01G131300 Theobroma cacao HOM05D003405 ORTHO05D003920 3.7e-32 142.1 166 50.6
Prupe.7G160700 Prunus persica HOM05D003405 ORTHO05D003920 4.8e-32 141.7 168 50.0
Haze_21717 Corylus avellana HOM05D003405 ORTHO05D003920 8.2e-32 141.0 163 52.1
Nitab4.5_0003101g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.1e-31 140.6 171 51.5
Sopen04g001310 Solanum pennellii HOM05D003405 ORTHO05D003920 1.1e-31 140.6 165 52.7
MD12G1093200 Malus domestica HOM05D003405 ORTHO05D003920 6.9e-31 137.9 169 49.1
Nitab4.5_0000401g0230 Nicotiana tabacum HOM05D003405 ORTHO05D003920 6.9e-31 137.9 210 43.8
SGA_v2.0_scaffold81G26011 Striga asiatica HOM05D003405 ORTHO05D003920 9.0e-31 137.5 169 53.8
PSO761G0245 Papaver somniferum HOM05D003405 ORTHO05D003920 1.2e-30 137.1 169 47.3
THA.LOC104821304 Tarenaya hassleriana HOM05D003405 ORTHO05D003920 1.2e-30 137.1 177 45.8
Sed0024756 Sechium edule HOM05D003405 ORTHO05D003920 2.6e-30 136.0 172 50.0
CDE09G0427 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 3.4e-30 135.6 169 49.1
Eucgr.H02854 Eucalyptus grandis HOM05D003405 ORTHO05D003920 3.4e-30 135.6 168 50.0
COL.COLO4_35734 Corchorus olitorius HOM05D003405 ORTHO05D003920 5.9e-30 134.8 162 50.0
Atru.chr3.672 Acer truncatum HOM05D003405 ORTHO05D003920 1.0e-29 134.0 170 51.8
Oeu028071.1 Olea europaea HOM05D003405 ORTHO05D003920 1.0e-29 134.0 167 51.5
Cc04_g14820 Coffea canephora HOM05D003405 ORTHO05D003920 2.9e-29 132.5 165 50.3
Atru.chr3.717 Acer truncatum HOM05D003405 ORTHO05D003920 6.5e-29 131.3 170 50.6
CDE09G0650 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 2.5e-28 129.4 169 46.7
FAN04G1939 Fragaria x ananassa HOM05D003405 ORTHO05D003920 3.2e-28 129.0 175 46.9
ATR0693G254 Amborella trichopoda HOM05D003405 ORTHO05D003920 7.2e-28 127.9 163 47.9
Hund18693 Selenicereus undatus HOM05D003405 ORTHO05D003920 9.3e-28 127.5 166 48.8
CDE02G2548 Ceratophyllum demersum HOM05D003405 ORTHO05D003920 1.2e-27 127.1 169 46.7
FAN26G2328 Fragaria x ananassa HOM05D003405 ORTHO05D003920 4.6e-27 125.2 176 43.8
Actinidia00757 Actinidia chinensis HOM05D003405 ORTHO05D003920 6.1e-27 124.8 143 55.9
PGR083G0802 Punica granatum HOM05D003405 ORTHO05D003920 6.1e-27 124.8 167 44.9
CARHR225780 Cardamine hirsuta HOM05D003405 ORTHO05D003920 1.0e-26 124.0 170 43.5
CiPaw.08G138300 Carya illinoinensis HOM05D003405 ORTHO05D003920 1.8e-26 123.2 168 45.8
Medtr5g097870 Medicago truncatula HOM05D003405 ORTHO05D003920 3.9e-26 122.1 167 47.3
PGSC0003DMG400023568 Solanum tuberosum HOM05D003405 ORTHO05D003920 3.9e-26 122.1 165 47.3
Phvul.008G287000 Phaseolus vulgaris HOM05D003405 ORTHO05D003920 5.1e-26 121.7 167 49.1
Ca_06470_v3 Cicer arietinum L. HOM05D003405 ORTHO05D003920 6.7e-26 121.3 167 46.1
arahy.Tifrunner.gnm1.ann1.LTR966 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.1e-25 120.6 168 48.8
Carub.0007s2229 Capsella rubella HOM05D003405 ORTHO05D003920 1.1e-25 120.6 171 43.3
arahy.Tifrunner.gnm1.ann1.98W4LT Arachis hypogaea HOM05D003405 ORTHO05D003920 1.5e-25 120.2 167 48.5
Aa31LG6G1580 Aethionema arabicum HOM05D003405 ORTHO05D003920 1.9e-25 119.8 169 43.8
AT4G18905 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 1.9e-25 119.8 170 42.9
Sabra07G0016700 Salix brachista HOM05D003405 ORTHO05D003920 1.9e-25 119.8 189 42.3
AL7G35270 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 2.5e-25 119.4 170 42.4
ClCG04G004000 Citrullus lanatus HOM05D003405 ORTHO05D003920 2.5e-25 119.4 165 45.5
Lsat_1_v5_gn_5_59220 Lactuca sativa HOM05D003405 ORTHO05D003920 2.5e-25 119.4 156 48.1
VMungo0647G2029 Vigna mungo HOM05D003405 ORTHO05D003920 2.5e-25 119.4 168 43.5
RcHm_v2.0_Chr2g0100561 Rosa chinensis HOM05D003405 ORTHO05D003920 3.3e-25 119.0 171 45.0
CsaV3_2G007870 Cucumis sativus L. HOM05D003405 ORTHO05D003920 4.3e-25 118.6 169 45.0
EL10As7g23803 Beta vulgaris HOM05D003405 ORTHO05D003920 5.7e-25 118.2 160 49.4
PSO832G1536 Papaver somniferum HOM05D003405 ORTHO05D003920 5.7e-25 118.2 205 41.0
MELO3C004100.2 Cucumis melo HOM05D003405 ORTHO05D003920 2.8e-24 115.9 165 45.5
Glyma.02G307200 Glycine max HOM05D003405 ORTHO05D003920 2.8e-24 115.9 166 47.6
Glyma.14G005900 Glycine max HOM05D003405 ORTHO05D003920 3.7e-24 115.5 166 47.0
Sc09g0007320 Simmondsia chinensis HOM05D003405 ORTHO05D003920 6.3e-24 114.8 171 44.4
Cfa013259 Carpinus fangiana HOM05D003405 ORTHO05D006100 8.2e-24 114.4 163 46.6
Thhalv10024971m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 8.2e-24 114.4 171 42.1
vmacro02576 Vaccinium macrocarpon HOM05D003405 ORTHO05D003920 8.2e-24 114.4 232 39.7
TWI73G0135 Tripterygium wilfordii HOM05D003405 ORTHO05D003920 1.1e-23 114.0 181 43.6
FvH4_5g33300 Fragaria vesca HOM05D003405 ORTHO05D003920 1.4e-23 113.6 171 44.4
Nitab4.5_0001652g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.4e-23 113.6 171 43.9
FAN08G1135 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.4e-23 112.8 189 41.8
FAN18G4171 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.4e-23 112.8 189 41.8
LjContig00081g0028006 Lotus japonicus HOM05D003405 ORTHO05D003920 2.4e-23 112.8 171 43.3
BcaC09g51456 Brassica carinata HOM05D003405 ORTHO05D003920 3.1e-23 112.5 170 41.8
C01p12940 Brassica napus HOM05D003405 ORTHO05D003920 3.1e-23 112.5 170 41.8
BcaNung04868 Brassica carinata HOM05D003405 ORTHO05D003920 4.1e-23 112.1 170 42.9
Ah.05g167170 Amaranthus hybridus HOM05D003405 ORTHO05D003920 1.2e-22 110.5 166 44.6
A01p10930 Brassica napus HOM05D003405 ORTHO05D003920 1.5e-22 110.2 173 41.6
arahy.Tifrunner.gnm1.ann1.1Z7RSE Arachis hypogaea HOM05D003405 ORTHO05D003920 3.4e-22 109.0 167 44.9
BolC1t01269H Brassica oleracea HOM05D003405 ORTHO05D003920 3.4e-22 109.0 172 41.3
arahy.Tifrunner.gnm1.ann1.015YF3 Arachis hypogaea HOM05D003405 ORTHO05D003920 4.5e-22 108.6 168 45.8
TPR.G15067 Trifolium pratense HOM05D003405 ORTHO05D003920 7.7e-22 107.8 167 43.7
Nitab4.5_0004347g0060 Nicotiana tabacum HOM05D003405 ORTHO05D003920 1.3e-21 107.1 170 42.4
unitig_52.g17243 Utricularia gibba HOM05D003405 ORTHO05D003920 2.9e-21 105.9 167 44.9
BraA01t01039Z Brassica rapa HOM05D003405 ORTHO05D003920 3.8e-21 105.5 175 41.1
PGSC0003DMG402005959 Solanum tuberosum HOM05D003405 ORTHO05D003920 1.9e-20 103.2 161 43.5
BcaB04g18507 Brassica carinata HOM05D003405 ORTHO05D003920 3.2e-20 102.4 170 40.6
Mapoly0004s0245 Marchantia polymorpha HOM05D003405 ORTHO05D003920 1.2e-19 100.5 175 41.1
Sp7g17610 Schrenkiella parvula HOM05D003405 ORTHO05D003920 2.7e-19 99.4 173 39.3
arahy.Tifrunner.gnm1.ann1.AGQ12H Arachis hypogaea HOM05D003405 ORTHO05D003920 3.6e-19 99.0 147 47.6
SalBow6G4756 Salvia bowleyana HOM05D003405 ORTHO05D003920 4.7e-19 98.6 162 41.4
Atru.chr1.1032 Acer truncatum HOM05D003405 ORTHO05D003920 1.0e-18 97.4 116 53.4
AagrBONN_evm.TU.Sc2ySwM_228.2786 Anthoceros agrestis HOM05D003405 ORTHO05D003920 1.4e-18 97.1 173 39.3
Thhalv10027098m.g Eutrema salsugineum HOM05D003405 ORTHO05D003920 6.7e-18 94.7 175 38.9
Peaxi162Scf00047g00219 Petunia axillaris HOM05D003405 ORTHO05D003920 1.5e-17 93.6 132 49.2
HanXRQChr13g0411651 Helianthus annuus HOM05D003405 ORTHO05D003920 9.7e-17 90.9 114 50.0
Psat2g004000 Pisum sativum HOM05D003405 ORTHO05D003920 9.7e-17 90.9 127 48.8
C03p81560 Brassica napus HOM05D003405 ORTHO05D003920 2.2e-16 89.7 174 39.7
BolC3t20426H Brassica oleracea HOM05D003405 ORTHO05D003920 2.2e-16 89.7 174 39.7
CARHR243680 Cardamine hirsuta HOM05D003405 ORTHO05D003920 2.2e-16 89.7 175 34.9
arahy.Tifrunner.gnm1.ann1.LKD0H4 Arachis hypogaea HOM05D003405 ORTHO05D003920 3.7e-16 89.0 127 43.3
CANSAT11G1046 Cannabis sativa HOM05D003405 ORTHO05D003920 6.3e-16 88.2 176 39.2
arahy.Tifrunner.gnm1.ann1.ZY1N1V Arachis hypogaea HOM05D003405 ORTHO05D003920 8.2e-16 87.8 130 48.5
BraA08t33398Z Brassica rapa HOM05D003405 ORTHO05D003920 8.2e-16 87.8 176 36.9
Pp3c4_20160 Physcomitrium patens HOM05D003405 ORTHO05D003920 1.1e-15 87.4 181 37.0
AUR62039160 Chenopodium quinoa HOM05D003405 ORTHO05D003920 2.4e-15 86.3 115 48.7
ECA240G1009 Erigeron canadensis HOM05D003405 ORTHO05D003920 4.1e-15 85.5 174 37.4
BcaB04g18506 Brassica carinata HOM05D003405 ORTHO05D003920 6.9e-15 84.7 174 39.1
FAN28G2580 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.2e-14 84.0 108 45.4
arahy.Tifrunner.gnm1.ann1.555Q75 Arachis hypogaea HOM05D003405 ORTHO05D003920 1.5e-14 83.6 112 45.5
FAN23G2718 Fragaria x ananassa HOM05D003405 ORTHO05D003920 2.0e-14 83.2 108 43.5
BraA08t33397Z Brassica rapa HOM05D003405 ORTHO05D003920 2.6e-14 82.8 174 37.4
arahy.Tifrunner.gnm1.ann1.LK2XUL Arachis hypogaea HOM05D003405 ORTHO05D003920 3.4e-14 82.4 113 49.6
FAN28G1735 Fragaria x ananassa HOM05D003405 ORTHO05D003920 4.5e-14 82.0 121 44.6
Lalb_Chr17g0349241 Lupinus albus HOM05D003405 ORTHO05D003920 4.5e-14 82.0 173 35.3
AUR62033117 Chenopodium quinoa HOM05D003405 ORTHO05D003920 1.0e-13 80.9 115 45.2
Rhsim13G0025400 Rhododendron simsii HOM05D003405 ORTHO05D003920 1.0e-13 80.9 162 37.0
arahy.Tifrunner.gnm1.ann1.A1R0CF Arachis hypogaea HOM05D003405 ORTHO05D003920 1.3e-13 80.5 131 45.8
HanXRQChr03g0083001 Helianthus annuus HOM05D003405 ORTHO05D003920 1.7e-13 80.1 122 45.1
arahy.Tifrunner.gnm1.ann1.6C167N Arachis hypogaea HOM05D003405 ORTHO05D003920 3.8e-13 79.0 127 46.5
BcaC01g00577 Brassica carinata HOM05D003405 ORTHO05D003920 6.5e-13 78.2 172 37.8
FAN19G0435 Fragaria x ananassa HOM05D003405 ORTHO05D003920 1.9e-12 76.6 128 42.2
BcaNung00601 Brassica carinata HOM05D003405 ORTHO05D003920 4.2e-12 75.5 165 33.3
VMungo0540G1594 Vigna mungo HOM05D003405 ORTHO05D003920 5.5e-12 75.1 146 37.0
FvH4_1g12600 Fragaria vesca HOM05D003405 ORTHO05D003920 2.7e-11 72.8 117 42.7
Carub.0007s2230 Capsella rubella HOM05D003405 ORTHO05D003920 3.6e-11 72.4 159 36.5
AL7G15790 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 6.1e-11 71.6 179 34.1
Os01g0924300 Oryza sativa ssp. japonica HOM05D003405 ORTHO05D003920 8.0e-11 71.2 171 31.6
AL7G35280 Arabidopsis lyrata HOM05D003405 ORTHO05D003920 3.0e-10 69.3 112 42.0
AT4G35370 Arabidopsis thaliana HOM05D003405 ORTHO05D003920 5.2e-10 68.6 167 31.1
BcaNung00602 Brassica carinata HOM05D003405 ORTHO05D003920 1.5e-09 67.0 169 27.8
Sp7g33160 Schrenkiella parvula HOM05D003405 ORTHO05D003920 4.4e-09 65.5 158 31.0
HPP92_003102 Vanilla planifolia HOM05D003405 ORTHO05D003920 3.7e-08 62.4 119 38.7
C01p03540 Brassica napus HOM05D003405 ORTHO05D003920 1.1e-07 60.8 202 23.8
C03p81570 Brassica napus HOM05D003405 ORTHO05D003920 1.1e-07 60.8 105 39.0
BolC1t00343H Brassica oleracea HOM05D003405 ORTHO05D003920 1.1e-07 60.8 202 23.8
Cre01.g035000 Chlamydomonas reinhardtii HOM05D003405 ORTHO05D003920 3.1e-07 59.3 183 29.0
CBR_g8571 Chara braunii HOM05D003405 ORTHO05D003920 4.1e-07 58.9 80 42.5
Carub.0003s3263 Capsella rubella HOM05D003405 ORTHO05D003920 5.3e-07 58.5 124 34.7
Dinv40394 Davidia involucrata HOM05D003405 ORTHO05D003920 7.0e-07 58.2 35 82.9
Rhsim05G0047900 Rhododendron simsii HOM05D003405 ORTHO05D003920 4.5e-06 55.5 162 32.7
RhsimUnG0142200 Rhododendron simsii HOM05D003405 ORTHO05D003920 4.5e-06 55.5 162 32.7
BcaC06g30604 Brassica carinata HOM05D003405 ORTHO05D003920 7.7e-06 54.7 68 44.1


User provided reference genes

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