Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031808 Camellia sinensis var. sinensis HOM05D008114 ORTHO05D010089 1.1e-33 146.0 72 100.0
Hma1.2p1_1314F.1_g275000 Hydrangea macrophylla HOM05D008114 ORTHO05D010089 5.0e-13 77.4 71 59.2
Hma1.2p1_2306F.1_g319355 Hydrangea macrophylla HOM05D008114 ORTHO05D010089 5.0e-13 77.4 71 59.2
TAR622G1122 Trochodendron aralioides HOM05D008114 ORTHO05D010089 8.5e-13 76.6 70 60.0
TAR622G0804 Trochodendron aralioides HOM05D008114 ORTHO05D010089 2.5e-12 75.1 70 60.0
TAR374G0456 Trochodendron aralioides HOM05D008114 ORTHO05D010089 5.5e-12 73.9 71 56.3
Thecc.02G221900 Theobroma cacao HOM05D008114 ORTHO05D010089 7.2e-12 73.6 70 54.3
Manes.06G065000 Manihot esculenta HOM05D008114 ORTHO05D010089 1.8e-10 68.9 65 52.3
TAR371G0741 Trochodendron aralioides HOM05D008114 ORTHO05D010089 2.3e-10 68.6 70 52.9
CiPaw.05G241900 Carya illinoinensis HOM05D008114 ORTHO05D010089 6.7e-10 67.0 74 51.4
CiPaw.05G242400 Carya illinoinensis HOM05D008114 ORTHO05D010089 6.7e-10 67.0 74 51.4
CSS0047992 Camellia sinensis var. sinensis HOM05D008114 ORTHO05D010089 1.1e-09 66.2 60 63.3
QL93p0145_0019 Quercus lobata HOM05D008114 ORTHO05D010089 1.1e-09 66.2 74 54.1
COL.COLO4_32149 Corchorus olitorius HOM05D008114 ORTHO05D010089 2.5e-09 65.1 68 55.9
QL01p010819 Quercus lobata HOM05D008114 ORTHO05D010089 3.3e-09 64.7 74 52.7
Potri.012G054000 Populus trichocarpa HOM05D008114 ORTHO05D010089 7.4e-09 63.5 70 50.0
Manes.14G106800 Manihot esculenta HOM05D008114 ORTHO05D010089 9.7e-09 63.2 56 57.1
Gohir.D09G050800 Gossypium hirsutum HOM05D008114 ORTHO05D010089 1.3e-08 62.8 69 50.7
Gorai.006G058900 Gossypium raimondii HOM05D008114 ORTHO05D010089 1.3e-08 62.8 69 50.7
Thecc.03G040900 Theobroma cacao HOM05D008114 ORTHO05D010089 1.3e-08 62.8 66 51.5
Atru.chr9.903 Acer truncatum HOM05D008114 ORTHO05D010089 1.7e-08 62.4 73 53.4
Atru.chr11.236 Acer truncatum HOM05D008114 ORTHO05D010089 2.2e-08 62.0 70 52.9
Hma1.2p1_1283F.1_g272780 Hydrangea macrophylla HOM05D008114 ORTHO05D010089 2.2e-08 62.0 74 54.1
QL10p026513 Quercus lobata HOM05D008114 ORTHO05D010089 2.8e-08 61.6 70 54.3
Potri.010G120300 Populus trichocarpa HOM05D008114 ORTHO05D010089 3.7e-08 61.2 71 49.3
RcHm_v2.0_Chr4g0434421 Rosa chinensis HOM05D008114 ORTHO05D010089 3.7e-08 61.2 71 52.1
Duzib205G1811 Durio zibethinus HOM05D008114 ORTHO05D010089 6.3e-08 60.5 69 46.4
FAN17G1195 Fragaria x ananassa HOM05D008114 ORTHO05D010089 8.2e-08 60.1 72 47.2
Cc11_g09680 Coffea canephora HOM05D008114 ORTHO05D010089 1.1e-07 59.7 62 53.2
Haze_00653 Corylus avellana HOM05D008114 ORTHO05D010089 1.1e-07 59.7 69 49.3
FAN22G0519 Fragaria x ananassa HOM05D008114 ORTHO05D010089 2.4e-07 58.5 72 45.8
Aa31LG4G11900 Aethionema arabicum HOM05D013984 ORTHO05D010089 3.1e-07 58.2 59 47.5
Cfa015838 Carpinus fangiana HOM05D008114 ORTHO05D010089 3.1e-07 58.2 71 46.5
Ciclev10017364m.g Citrus clementina HOM05D008114 ORTHO05D010089 3.1e-07 58.2 74 48.6
Haze_18729 Corylus avellana HOM05D008114 ORTHO05D010089 3.1e-07 58.2 56 51.8
Cfa019734 Carpinus fangiana HOM05D008114 ORTHO05D010089 4.1e-07 57.8 56 53.6
Dinv12222 Davidia involucrata HOM05D008114 ORTHO05D010089 5.3e-07 57.4 70 47.1
CiPaw.06G016700 Carya illinoinensis HOM05D008114 ORTHO05D010089 6.9e-07 57.0 70 52.9
TAR535G0009 Trochodendron aralioides HOM05D008114 ORTHO05D010089 6.9e-07 57.0 72 47.2
Sabra12G0037800 Salix brachista HOM05D008114 ORTHO05D010089 1.2e-06 56.2 71 47.9
FAN07G1623 Fragaria x ananassa HOM05D008114 ORTHO05D010089 1.5e-06 55.8 72 44.4
Rhsim12G0141700 Rhododendron simsii HOM05D008114 ORTHO05D010089 1.5e-06 55.8 71 46.5
CSS0032238 Camellia sinensis var. sinensis HOM05D008114 ORTHO05D010089 2.0e-06 55.5 60 46.7
Gohir.D12G146500 Gossypium hirsutum HOM05D008114 ORTHO05D010089 2.0e-06 55.5 48 56.2
Manes.05G132900 Manihot esculenta HOM05D008114 ORTHO05D010089 2.0e-06 55.5 72 47.2
Gohir.A12G141700 Gossypium hirsutum HOM05D008114 ORTHO05D010089 2.6e-06 55.1 48 54.2
Gorai.008G157800 Gossypium raimondii HOM05D008114 ORTHO05D010089 2.6e-06 55.1 48 54.2
FAN12G0147 Fragaria x ananassa HOM05D008114 ORTHO05D010089 3.4e-06 54.7 72 45.8
Glyma.07G097200 Glycine max HOM05D008114 ORTHO05D010089 3.4e-06 54.7 70 51.4
Lsat_1_v5_gn_8_41420 Lactuca sativa HOM05D008114 ORTHO05D010089 3.4e-06 54.7 77 42.9
Psat6g224640 Pisum sativum HOM05D021627 ORTHO05D021511 3.4e-06 54.7 76 43.4
FAN18G3335 Fragaria x ananassa HOM05D008114 ORTHO05D010089 4.5e-06 54.3 78 41.0
Prupe.5G224700 Prunus persica HOM05D008114 ORTHO05D010089 5.9e-06 53.9 72 47.2
CiPaw.16G088900 Carya illinoinensis HOM05D008114 ORTHO05D010089 7.7e-06 53.5 50 54.0
Lalb_Chr06g0165841 Lupinus albus HOM05D021627 ORTHO05D021511 7.7e-06 53.5 77 41.6
TAR426G0004 Trochodendron aralioides HOM05D008114 ORTHO05D010089 7.7e-06 53.5 72 44.4


User provided reference genes

Program Settings