Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031801 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.6e-228 795.8 414 100.0
CSS0008670 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 2.4e-221 771.9 422 96.0
Actinidia23884 Actinidia chinensis HOM05D003726 ORTHO05D003520 3.9e-102 375.9 426 55.2
Actinidia34457 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.2e-97 360.1 436 54.1
Rhsim13G0068300 Rhododendron simsii HOM05D003726 ORTHO05D003520 1.3e-89 334.3 394 52.0
Dinv28651 Davidia involucrata HOM05D003726 ORTHO05D003520 4.8e-84 315.8 438 47.7
Hma1.2p1_0962F.1_g241820 Hydrangea macrophylla HOM05D003726 ORTHO05D003520 3.0e-78 296.6 431 49.7
Rhsim01G0236900 Rhododendron simsii HOM05D003726 ORTHO05D003520 6.7e-78 295.4 438 47.5
Cfa011708 Carpinus fangiana HOM05D003726 ORTHO05D003520 5.9e-66 255.8 411 41.4
Dinv03102 Davidia involucrata HOM05D003726 ORTHO05D003520 3.8e-65 253.1 312 52.2
CiPaw.13G076400 Carya illinoinensis HOM05D003726 ORTHO05D003520 3.6e-63 246.5 446 39.2
QL01p038574 Quercus lobata HOM05D003726 ORTHO05D003520 6.3e-60 235.7 456 39.0
CiPaw.14G058500 Carya illinoinensis HOM05D003726 ORTHO05D003520 1.9e-56 224.2 419 39.9
Haze_24339 Corylus avellana HOM05D003726 ORTHO05D003520 3.0e-54 216.9 402 39.3
Potri.009G046900 Populus trichocarpa HOM05D003726 ORTHO05D003520 3.1e-51 206.8 440 37.7
Cc01_g14320 Coffea canephora HOM05D003726 ORTHO05D003520 1.0e-49 201.8 450 37.3
TAR369G0146 Trochodendron aralioides HOM05D003726 ORTHO05D003520 5.0e-49 199.5 382 39.5
Aqoxy4G02538 Aquilegia oxysepala HOM05D003726 ORTHO05D003520 3.2e-48 196.8 398 36.2
Nn2g10861 Nelumbo nucifera HOM05D003726 ORTHO05D003520 5.5e-48 196.1 433 37.6
TAR623G0590 Trochodendron aralioides HOM05D003726 ORTHO05D003520 7.2e-48 195.7 410 37.8
Thecc.09G299900 Theobroma cacao HOM05D003726 ORTHO05D003520 2.1e-47 194.1 432 36.1
Gorai.009G091100 Gossypium raimondii HOM05D003726 ORTHO05D003520 6.7e-46 189.1 402 36.8
EL10Ac7g16184 Beta vulgaris HOM05D003726 ORTHO05D003520 2.0e-45 187.6 430 34.7
Gohir.D05G088900 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.0e-45 187.6 403 37.0
Sabra09G0034300 Salix brachista HOM05D003726 ORTHO05D003520 7.4e-45 185.7 437 37.8
Gohir.A05G087800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.1e-43 181.8 402 36.1
Duzib168G1865 Durio zibethinus HOM05D003726 ORTHO05D003520 5.3e-43 179.5 414 36.7
DCAR_005887 Daucus carota HOM05D003726 ORTHO05D003520 7.0e-43 179.1 400 36.5
COL.COLO4_19173 Corchorus olitorius HOM05D003726 ORTHO05D003520 9.1e-43 178.7 409 36.7
Cpa.g.sc112.4 Carica papaya HOM05D003726 ORTHO05D003520 1.6e-42 177.9 453 34.0
Duzib170G0773 Durio zibethinus HOM05D003726 ORTHO05D003520 2.2e-41 174.1 383 37.1
Prupe.6G056200 Prunus persica HOM05D003726 ORTHO05D003520 7.2e-40 169.1 409 33.0
Lj1P136T16 Lonicera japonica HOM05D003726 ORTHO05D003520 1.2e-39 168.3 317 41.6
Nn2g13146 Nelumbo nucifera HOM05D003726 ORTHO05D003520 1.8e-38 164.5 444 31.8
Eucgr.B02248 Eucalyptus grandis HOM05D003726 ORTHO05D003520 6.7e-38 162.5 396 35.1
Ah.08g221410 Amaranthus hybridus HOM05D003726 ORTHO05D003520 5.7e-37 159.5 393 32.3
AUR62020147 Chenopodium quinoa HOM05D003726 ORTHO05D003520 1.7e-36 157.9 388 33.0
TWI31G1278 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 6.3e-36 156.0 409 32.0
FAN16G2238 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.2e-36 155.6 400 34.0
Nitab4.5_0008578g0030 Nicotiana tabacum HOM05D003726 ORTHO05D003520 9.1e-35 152.1 422 33.2
FAN25G1890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 2.0e-34 151.0 400 33.2
MBI03_g31834_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.0e-34 151.0 431 34.3
FAN21G3554 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.5e-34 149.8 401 32.2
MD03G1068300 Malus domestica HOM05D003726 ORTHO05D003520 7.7e-34 149.1 422 33.4
Lj6g0007419 Lotus japonicus HOM05D003726 ORTHO05D003520 1.1e-32 145.2 411 31.6
FAN11G0812 Fragaria x ananassa HOM05D003726 ORTHO05D003520 3.2e-32 143.7 400 31.2
Lalb_Chr18g0050991 Lupinus albus HOM05D003726 ORTHO05D003520 4.2e-32 143.3 418 31.6
FvH4_3g38760 Fragaria vesca HOM05D003726 ORTHO05D003520 7.2e-32 142.5 400 31.2
Glyma.02G227100 Glycine max HOM05D003726 ORTHO05D003520 7.2e-32 142.5 408 34.3
MD11G1072700 Malus domestica HOM05D003726 ORTHO05D003520 7.2e-32 142.5 398 31.4
RcHm_v2.0_Chr5g0069911 Rosa chinensis HOM05D003726 ORTHO05D003520 7.2e-32 142.5 409 31.3
Lsat_1_v5_gn_8_70880 Lactuca sativa HOM05D003726 ORTHO05D003520 1.6e-31 141.4 406 34.5
Phvul.008G260800 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 1.6e-31 141.4 403 32.8
MBI03_g32367_MAGBIO Magnolia biondii HOM05D003726 ORTHO05D003520 2.7e-31 140.6 428 33.4
Manes.02G118700 Manihot esculenta HOM05D003726 ORTHO05D003520 2.7e-31 140.6 438 29.5
PGR102G0699 Punica granatum HOM05D003726 ORTHO05D003520 3.6e-31 140.2 427 34.9
CANSAT54G2733 Cannabis sativa HOM05D003726 ORTHO05D003520 4.7e-31 139.8 416 32.5
LjContig00155g0026227 Lotus japonicus HOM05D003726 ORTHO05D003520 6.1e-31 139.4 416 30.8
Cfa017195 Carpinus fangiana HOM05D003726 ORTHO05D003520 2.3e-30 137.5 389 32.4
Haze_21015 Corylus avellana HOM05D003726 ORTHO05D003520 4.0e-30 136.7 403 31.3
Glyma.14G194200 Glycine max HOM05D003726 ORTHO05D003520 1.5e-29 134.8 402 33.1
ClCG03G000690 Citrullus lanatus HOM05D003726 ORTHO05D003520 3.4e-29 133.7 406 31.5
Ciclev10011806m.g Citrus clementina HOM05D003726 ORTHO05D003520 1.3e-28 131.7 404 32.2
Lalb_Chr04g0252221 Lupinus albus HOM05D003726 ORTHO05D003520 1.7e-28 131.3 414 30.2
VMungo0647G1535 Vigna mungo HOM05D003726 ORTHO05D003520 1.7e-28 131.3 407 32.9
Glyma.18G062100 Glycine max HOM05D003726 ORTHO05D003520 1.1e-27 128.6 430 30.9
Actinidia05361 Actinidia chinensis HOM05D003726 ORTHO05D003520 2.4e-27 127.5 478 31.6
GSVIVG01011170001 Vitis vinifera HOM05D003726 ORTHO05D003520 3.1e-27 127.1 408 31.9
Glyma.11G174300 Glycine max HOM05D003726 ORTHO05D003520 4.1e-27 126.7 446 29.1
Sed0002259 Sechium edule HOM05D003726 ORTHO05D003520 7.0e-27 125.9 391 30.9
Hund20990 Selenicereus undatus HOM05D003726 ORTHO05D003520 1.1e-24 118.6 424 30.4
Thecc.05G014300 Theobroma cacao HOM05D003726 ORTHO05D003520 2.5e-24 117.5 409 29.1
QL07p035285 Quercus lobata HOM05D003726 ORTHO05D003520 3.2e-24 117.1 413 27.8
CSS0035019 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 7.2e-24 115.9 415 30.1
MELO3C020542.2 Cucumis melo HOM05D003726 ORTHO05D003520 4.7e-23 113.2 400 29.2
Atru.chr8.2256 Acer truncatum HOM05D003726 ORTHO05D003520 6.1e-23 112.8 399 32.3
Duzib093G1061 Durio zibethinus HOM05D003726 ORTHO05D003520 1.0e-22 112.1 417 29.7
Potri.016G117400 Populus trichocarpa HOM05D003726 ORTHO05D003520 1.4e-22 111.7 428 28.7
Medtr3g464300 Medicago truncatula HOM05D003726 ORTHO05D003520 2.3e-22 110.9 392 30.6
Duzib128G0808 Durio zibethinus HOM05D003726 ORTHO05D003520 3.0e-22 110.5 402 29.4
CsaV3_1G036240 Cucumis sativus L. HOM05D003726 ORTHO05D003520 1.2e-21 108.6 401 29.9
arahy.Tifrunner.gnm1.ann1.P4YYRQ Arachis hypogaea HOM05D003726 ORTHO05D003520 3.4e-21 107.1 401 30.9
THA.LOC104810708 Tarenaya hassleriana HOM05D003726 ORTHO05D003520 4.4e-21 106.7 435 29.0
arahy.Tifrunner.gnm1.ann1.IE2B4C Arachis hypogaea HOM05D003726 ORTHO05D003520 5.7e-21 106.3 411 30.4
CARHR272490 Cardamine hirsuta HOM05D011448 ORTHO05D003520 2.8e-20 104.0 427 28.1
Thhalv10015324m.g Eutrema salsugineum HOM05D011448 ORTHO05D003520 2.8e-20 104.0 428 29.0
MD04G1154900 Malus domestica HOM05D003726 ORTHO05D003520 3.7e-20 103.6 415 27.0
CiPaw.09G210300 Carya illinoinensis HOM05D003726 ORTHO05D003520 6.3e-20 102.8 411 27.5
AUR62001632 Chenopodium quinoa HOM05D003726 ORTHO05D003520 6.3e-20 102.8 186 41.4
Dinv14505 Davidia involucrata HOM05D003726 ORTHO05D003520 8.3e-20 102.4 396 29.5
TPR.G15189 Trifolium pratense HOM05D003726 ORTHO05D003520 1.1e-19 102.1 410 29.3
CSS0024143 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.8e-19 101.3 415 28.4
ECA236G2409 Erigeron canadensis HOM05D000674 ORTHO05D001490 2.4e-19 100.9 351 29.9
Manes.09G107700 Manihot esculenta HOM05D003726 ORTHO05D003520 3.1e-19 100.5 427 28.6
Nitab4.5_0000261g0020 Nicotiana tabacum HOM05D003726 ORTHO05D003520 4.1e-19 100.1 396 28.3
BcaC04g19824 Brassica carinata HOM05D011448 ORTHO05D003520 7.0e-19 99.4 421 28.3
BolC9t57921H Brassica oleracea HOM05D011448 ORTHO05D003520 7.0e-19 99.4 421 28.3
Ca_14944_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 7.0e-19 99.4 382 29.6
PSO339G6116 Papaver somniferum HOM05D003726 ORTHO05D003520 7.0e-19 99.4 398 28.1
MD12G1168500 Malus domestica HOM05D003726 ORTHO05D003520 2.0e-18 97.8 418 28.0
Prupe.6G278700 Prunus persica HOM05D003726 ORTHO05D003520 2.0e-18 97.8 428 28.7
Atru.chr3.4198 Acer truncatum HOM05D003726 ORTHO05D003520 3.5e-18 97.1 416 29.6
Phvul.010G076500 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.5e-18 97.1 412 26.9
AL8G34900 Arabidopsis lyrata HOM05D011448 ORTHO05D003520 1.0e-17 95.5 420 26.4
Cpa.g.sc11.124 Carica papaya HOM05D003726 ORTHO05D003520 2.3e-17 94.4 429 28.0
A10p15630 Brassica napus HOM05D011448 ORTHO05D003520 1.1e-16 92.0 411 28.5
Psat5g158000 Pisum sativum HOM05D003726 ORTHO05D003520 1.5e-16 91.7 412 28.4
Sabra16G0113500 Salix brachista HOM05D003726 ORTHO05D003520 1.9e-16 91.3 425 26.8
MELO3C009159.2 Cucumis melo HOM05D003726 ORTHO05D003520 2.5e-16 90.9 273 33.3
CsaV3_3G033690 Cucumis sativus L. HOM05D003726 ORTHO05D003520 4.3e-16 90.1 270 33.0
AT5G58630 Arabidopsis thaliana HOM05D011448 ORTHO05D003520 5.6e-16 89.7 400 27.2
Sed0010018 Sechium edule HOM05D003726 ORTHO05D003520 5.6e-16 89.7 414 26.3
TWI74G0063 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 7.3e-16 89.4 415 26.5
CDE04G1884 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 9.5e-16 89.0 365 31.5
Nitab4.5_0002020g0040 Nicotiana tabacum HOM05D003726 ORTHO05D003520 9.5e-16 89.0 409 26.9
CDE08G1412 Ceratophyllum demersum HOM05D044379 ORTHO05D003520 1.6e-15 88.2 362 31.2
FAN09G2526 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.0e-15 85.9 423 28.6
COL.COLO4_14518 Corchorus olitorius HOM05D003726 ORTHO05D003520 1.0e-14 85.5 408 27.9
FAN02G2870 Fragaria x ananassa HOM05D003726 ORTHO05D003520 1.8e-14 84.7 416 28.4
BraA10t43670Z Brassica rapa HOM05D011448 ORTHO05D003520 5.2e-14 83.2 413 28.1
Oeu005176.1 Olea europaea HOM05D003726 ORTHO05D003520 5.2e-14 83.2 389 27.2
VMungo0331G0804 Vigna mungo HOM05D003726 ORTHO05D003520 5.2e-14 83.2 288 30.6
ClCG10G022200 Citrullus lanatus HOM05D003726 ORTHO05D003520 1.2e-13 82.0 410 27.6
Lj3g0010607 Lotus japonicus HOM05D003726 ORTHO05D003520 1.2e-13 82.0 433 26.3
DCAR_024016 Daucus carota HOM05D003726 ORTHO05D003520 1.5e-13 81.6 401 25.7
Sp6g20330 Schrenkiella parvula HOM05D011448 ORTHO05D003520 1.5e-13 81.6 408 27.0
Glyma.18G202500 Glycine max HOM05D003726 ORTHO05D003520 2.0e-13 81.3 364 28.0
RcHm_v2.0_Chr3g0462881 Rosa chinensis HOM05D003726 ORTHO05D003520 2.6e-13 80.9 427 26.5
PGSC0003DMG400030244 Solanum tuberosum HOM05D003726 ORTHO05D003520 2.6e-13 80.9 390 26.9
Ca_05609_v3 Cicer arietinum L. HOM05D003726 ORTHO05D003520 3.4e-13 80.5 277 30.0
Phvul.008G098200 Phaseolus vulgaris HOM05D003726 ORTHO05D003520 3.4e-13 80.5 362 26.0
FAN14G0787 Fragaria x ananassa HOM05D003726 ORTHO05D003520 4.4e-13 80.1 416 27.6
FvH4_6g11320 Fragaria vesca HOM05D003726 ORTHO05D003520 5.7e-13 79.7 427 28.3
HanXRQChr05g0135801 Helianthus annuus HOM05D003726 ORTHO05D003520 5.7e-13 79.7 273 31.1
Solyc09g005570.3 Solanum lycopersicum HOM05D003726 ORTHO05D003520 5.7e-13 79.7 392 27.0
Sopen09g001480 Solanum pennellii HOM05D003726 ORTHO05D003520 5.7e-13 79.7 392 27.0
PSO384G5133 Papaver somniferum HOM05D003726 ORTHO05D003520 9.8e-13 79.0 347 29.7
Sed0008005 Sechium edule HOM05D003726 ORTHO05D003520 1.1e-11 75.5 399 28.1
Glyma.07G151200 Glycine max HOM05D003726 ORTHO05D003520 1.4e-11 75.1 408 26.0
Oeu054393.1 Olea europaea HOM05D003726 ORTHO05D003520 2.4e-11 74.3 398 25.9
VMungo1383G2513 Vigna mungo HOM05D003726 ORTHO05D003520 4.1e-11 73.6 358 26.0
CSS0025538 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 1.2e-10 72.0 349 27.8
TPR.G13333 Trifolium pratense HOM05D003726 ORTHO05D003520 1.2e-10 72.0 421 25.9
Gohir.D09G161366 Gossypium hirsutum HOM05D003726 ORTHO05D003520 2.7e-10 70.9 404 27.5
CSS0029870 Camellia sinensis var. sinensis HOM05D003726 ORTHO05D003520 5.9e-10 69.7 349 27.5
FAN21G2890 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.9e-10 69.7 164 32.9
Psat2g057960 Pisum sativum HOM05D003726 ORTHO05D003520 5.9e-10 69.7 236 29.2
TWI53G1918 Tripterygium wilfordii HOM05D003726 ORTHO05D003520 5.9e-10 69.7 411 26.5
arahy.Tifrunner.gnm1.ann1.XHL4C7 Arachis hypogaea HOM05D003726 ORTHO05D003520 7.8e-10 69.3 186 32.8
Gohir.A09G165800 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.0e-09 68.9 401 27.2
HPP92_013884 Vanilla planifolia HOM05D003726 ORTHO05D003520 1.0e-09 68.9 414 25.6
Migut.L02021 Erythranthe guttata HOM05D003726 ORTHO05D003520 1.3e-09 68.6 411 27.3
Actinidia11576 Actinidia chinensis HOM05D003726 ORTHO05D003520 1.7e-09 68.2 385 25.5
Gorai.006G183100 Gossypium raimondii HOM05D003726 ORTHO05D003520 1.7e-09 68.2 404 25.7
Carub.0008s1925 Capsella rubella HOM05D011448 ORTHO05D003520 2.3e-09 67.8 335 25.1
PGR031G0398 Punica granatum HOM05D003726 ORTHO05D003520 3.0e-09 67.4 410 27.6
Eucgr.A00522 Eucalyptus grandis HOM05D003726 ORTHO05D003520 8.6e-09 65.9 152 37.5
FAN21G2593 Fragaria x ananassa HOM05D003726 ORTHO05D003520 8.6e-09 65.9 113 45.1
Medtr5g071090 Medicago truncatula HOM05D003726 ORTHO05D003520 2.5e-08 64.3 273 26.4
arahy.Tifrunner.gnm1.ann1.8UNH89 Arachis hypogaea HOM05D003726 ORTHO05D003520 3.3e-08 63.9 186 32.3
MSTRG.26816 Avicennia marina HOM05D003726 ORTHO05D003520 3.3e-08 63.9 397 28.0
Glyma.03G056800 Glycine max HOM05D003726 ORTHO05D003520 7.3e-08 62.8 435 25.3
Psat7g245680 Pisum sativum HOM05D003726 ORTHO05D003520 1.6e-07 61.6 386 26.4
Gorai.012G114900 Gossypium raimondii HOM05D003726 ORTHO05D003520 2.1e-07 61.2 399 23.1
SGA_v2.0_scaffold110G31210 Striga asiatica HOM05D003726 ORTHO05D003520 2.1e-07 61.2 391 29.4
TPR.G34575 Trifolium pratense HOM05D003726 ORTHO05D003520 4.7e-07 60.1 261 26.8
arahy.Tifrunner.gnm1.ann1.DIZ6KI Arachis hypogaea HOM05D003726 ORTHO05D003520 8.0e-07 59.3 416 27.6
SalBow2G1798 Salvia bowleyana HOM05D003726 ORTHO05D003520 8.0e-07 59.3 396 25.0
arahy.Tifrunner.gnm1.ann1.3NQ7J1 Arachis hypogaea HOM05D003726 ORTHO05D003520 1.1e-06 58.9 416 27.6
Gohir.D04G131050 Gossypium hirsutum HOM05D003726 ORTHO05D003520 1.1e-06 58.9 394 21.8
Lalb_Chr07g0193641 Lupinus albus HOM05D003726 ORTHO05D003520 1.1e-06 58.9 357 25.5
Medtr4g015650 Medicago truncatula HOM05D003726 ORTHO05D003520 1.1e-06 58.9 224 29.5
FAN14G4204 Fragaria x ananassa HOM05D003726 ORTHO05D003520 5.2e-06 56.6 334 29.0
EL10Ac5g12551 Beta vulgaris HOM05D029928 ORTHO05D003520 6.8e-06 56.2 417 25.2
Glyma.01G120800 Glycine max HOM05D003726 ORTHO05D003520 6.8e-06 56.2 435 25.1
Peaxi162Scf00170g00213 Petunia axillaris HOM05D003726 ORTHO05D003520 8.9e-06 55.8 173 32.9


User provided reference genes

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