Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 0.0e+00 1214.5 604 100.0
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 4.5e-176 622.1 306 100.0
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.6e-144 517.3 308 82.8
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 1.3e-143 514.2 306 82.0
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 3.1e-140 503.1 306 81.0
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 2.6e-139 500.0 306 80.7
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 5.8e-139 498.8 306 79.4
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 1.2e-133 481.1 306 75.2
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 1.8e-132 477.2 375 65.9
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 4.0e-132 476.1 362 66.6
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 1.2e-131 474.6 307 75.9
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.5e-131 474.2 307 75.9
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 6.4e-130 468.8 306 74.5
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 6.4e-130 468.8 346 67.6
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 8.4e-130 468.4 306 73.2
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 3.2e-129 466.5 306 73.2
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 4.2e-129 466.1 307 74.6
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 5.4e-129 465.7 306 73.2
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 5.4e-129 465.7 315 75.2
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 9.3e-129 464.9 306 74.2
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 3.9e-127 459.5 307 73.3
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 2.5e-126 456.8 306 72.2
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 4.3e-126 456.1 307 72.0
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 7.3e-126 455.3 307 74.3
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 1.1e-124 451.4 311 71.1
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 1.4e-124 451.1 307 71.3
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.4e-124 450.3 306 73.5
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 3.1e-124 449.9 306 71.2
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.0e-124 449.5 307 71.0
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 6.9e-124 448.7 307 71.7
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 1.2e-123 448.0 307 71.0
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.0e-123 447.2 307 72.0
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.4e-123 446.4 307 71.0
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 3.4e-123 446.4 308 71.8
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.5e-123 446.0 307 71.7
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 1.1e-121 441.4 306 70.9
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 1.9e-121 440.7 311 70.1
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 9.3e-121 438.3 309 70.6
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 3.5e-120 436.4 309 70.2
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.9e-119 433.0 321 67.0
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 6.7e-119 432.2 308 69.5
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.5e-118 431.0 308 71.1
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.9e-118 430.6 306 69.6
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 4.3e-118 429.5 306 65.7
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 5.6e-118 429.1 307 67.8
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 9.6e-118 428.3 306 69.3
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.3e-117 427.9 306 70.9
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 2.1e-117 427.2 306 66.0
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 8.1e-117 425.2 306 70.3
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 8.1e-117 425.2 306 67.0
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 1.4e-116 424.5 309 70.2
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 2.4e-116 423.7 308 67.5
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 4.0e-116 422.9 337 64.7
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 6.9e-116 422.2 309 68.3
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 6.9e-116 422.2 306 66.7
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 1.2e-115 421.4 306 67.6
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 1.5e-115 421.0 324 65.7
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 2.6e-115 420.2 306 66.7
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 4.5e-115 419.5 306 66.3
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 4.5e-115 419.5 309 67.3
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 1.7e-114 417.5 306 67.0
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.7e-114 417.5 306 68.0
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 2.2e-114 417.2 306 68.0
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 3.2e-113 413.3 307 66.1
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 7.1e-113 412.1 306 68.6
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 9.3e-113 411.8 306 66.3
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 1.2e-112 411.4 307 65.8
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 6.0e-112 409.1 311 68.8
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 6.0e-112 409.1 307 66.4
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 7.9e-112 408.7 306 64.7
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.3e-111 407.9 306 65.7
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 2.3e-111 407.1 306 66.7
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 2.5e-110 403.7 307 66.8
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 3.3e-110 403.3 306 66.0
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 8.2e-109 398.7 306 63.7
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 2.4e-108 397.1 306 65.0
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 4.0e-108 396.4 307 64.8
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 5.3e-108 396.0 308 66.2
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 6.9e-108 395.6 308 66.6
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 9.0e-108 395.2 316 62.7
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.3e-106 391.3 307 62.5
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 3.8e-106 389.8 306 60.8
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 4.9e-106 389.4 310 62.9
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 8.4e-106 388.7 306 62.4
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 1.1e-105 388.3 307 63.2
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 1.1e-105 388.3 307 64.5
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 1.1e-105 388.3 307 64.5
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 1.9e-105 387.5 347 56.5
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 5.5e-105 386.0 309 61.5
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 7.1e-105 385.6 332 58.1
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.1e-104 384.0 234 80.3
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 2.1e-104 384.0 316 60.8
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 4.6e-104 382.9 310 61.0
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 1.8e-103 380.9 342 57.9
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.0e-103 380.2 309 63.8
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 5.1e-103 379.4 309 60.5
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 5.1e-103 379.4 345 56.5
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 8.7e-103 378.6 309 63.4
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 1.9e-102 377.5 306 64.4
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.4e-100 370.5 274 68.6
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 3.1e-100 370.2 351 56.1
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 1.0e-98 365.2 309 60.5
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 1.1e-97 361.7 232 75.9
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 1.2e-96 358.2 306 63.1
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.7e-96 357.1 268 66.0
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 7.9e-96 355.5 267 68.2
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 3.0e-95 353.6 329 56.2
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 6.7e-95 352.4 307 59.6
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 7.4e-94 349.0 306 61.1
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 1.4e-92 344.7 345 54.2
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 6.9e-92 342.4 268 66.4
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 1.7e-90 337.8 306 53.6
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 1.7e-90 337.8 221 73.3
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 2.9e-90 337.0 307 54.4
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 3.9e-87 326.6 328 51.8
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.2e-77 294.3 310 54.2
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 4.5e-75 286.6 307 50.5
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.3e-74 285.0 317 52.7
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.5e-73 280.8 281 56.2
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 6.8e-71 272.7 291 52.6
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 2.2e-69 267.7 244 58.2
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.7e-66 258.1 308 45.5
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.9e-66 257.3 230 55.2
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 1.5e-65 255.0 193 66.8
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 3.2e-65 253.8 194 66.0
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 3.7e-61 240.4 153 72.5
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 4.5e-59 233.4 165 70.9
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.7e-58 231.5 306 43.1
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 6.6e-58 229.6 128 87.5
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.0e-55 220.3 155 67.7
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 6.8e-55 219.5 256 49.6
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 9.2e-52 209.1 127 81.9
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.9e-50 203.8 153 68.0
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 5.6e-49 199.9 128 74.2
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 4.7e-48 196.8 151 62.9
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 5.8e-46 189.9 163 61.3
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.7e-42 178.3 153 58.2
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 7.5e-38 162.9 315 33.3
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 8.3e-37 159.5 287 35.5
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 1.2e-35 155.6 219 38.4
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 3.0e-34 151.0 121 62.8
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 8.1e-32 142.9 217 35.0
Sopen03g027940 Solanum pennellii HOM05D004457 ORTHO05D005282 1.1e-31 142.5 119 56.3
ECA233G2641 Erigeron canadensis HOM05D004457 ORTHO05D005282 4.0e-31 140.6 120 63.3
DCAR_020421 Daucus carota HOM05D004457 ORTHO05D005282 1.2e-30 139.0 84 79.8
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.9e-28 131.7 296 30.4
Nitab4.5_0000845g0010 Nicotiana tabacum HOM05D004457 ORTHO05D005282 4.3e-25 120.6 169 45.6
RcHm_v2.0_Chr7g0241921 Rosa chinensis HOM05D004457 ORTHO05D005282 3.1e-23 114.4 96 66.7
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 1.9e-20 105.1 88 56.8
C07p33100 Brassica napus HOM05D004457 ORTHO05D005282 5.4e-20 103.6 74 67.6
BcaC06g34068 Brassica carinata HOM05D004457 ORTHO05D005282 1.2e-19 102.4 74 67.6
BolC9t54837H Brassica oleracea HOM05D004457 ORTHO05D005282 1.2e-19 102.4 74 67.6
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 1.7e-18 98.6 66 66.7
CDE02G4136 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 2.8e-16 91.3 77 58.4
MELO3C003309.2 Cucumis melo HOM05D004457 ORTHO05D005282 1.5e-14 85.5 68 66.2
QL09p022513 Quercus lobata HOM05D004457 ORTHO05D005282 7.6e-14 83.2 58 70.7
arahy.Tifrunner.gnm1.ann1.383HND Arachis hypogaea HOM05D004457 ORTHO05D005282 7.3e-09 66.6 44 70.5
QL03p072618 Quercus lobata HOM05D000132 ORTHO05D000058 5.8e-06 57.0 48 60.4


User provided reference genes

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