Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.6e-68 263.1 179 100.0
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 6.0e-60 234.6 177 88.7
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 7.9e-60 234.2 179 89.9
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 3.0e-59 232.3 176 89.8
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 5.1e-59 231.5 179 89.4
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 8.7e-59 230.7 179 83.8
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 8.7e-59 230.7 179 87.2
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 2.5e-58 229.2 178 81.5
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 9.6e-58 227.3 180 66.1
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 9.6e-58 227.3 173 91.3
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 1.3e-57 226.9 179 86.0
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 1.3e-57 226.9 174 85.1
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 1.3e-57 226.9 176 86.4
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 2.8e-57 225.7 179 87.7
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 2.8e-57 225.7 179 87.7
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 8.2e-57 224.2 174 88.5
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.1e-56 223.8 179 85.5
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.4e-56 223.4 178 86.0
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.1e-56 222.2 176 85.8
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 3.1e-56 222.2 176 85.8
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.0e-56 221.9 174 85.6
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 5.3e-56 221.5 176 85.2
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 5.3e-56 221.5 176 87.5
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 6.9e-56 221.1 178 86.5
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.9e-56 221.1 178 64.0
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 6.9e-56 221.1 176 85.2
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 6.9e-56 221.1 176 85.2
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.2e-55 220.3 174 88.5
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 1.2e-55 220.3 176 86.4
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 1.5e-55 219.9 179 84.4
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 2.0e-55 219.5 178 83.7
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 2.6e-55 219.2 174 84.5
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.6e-55 219.2 176 84.7
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 3.4e-55 218.8 174 84.5
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 5.8e-55 218.0 174 86.8
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 5.8e-55 218.0 177 87.0
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 7.6e-55 217.6 177 83.1
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.0e-54 217.2 174 86.2
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.7e-54 216.5 176 83.5
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 2.2e-54 216.1 177 81.4
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 2.9e-54 215.7 177 79.7
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 5.0e-54 214.9 176 81.8
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 8.4e-54 214.2 174 82.2
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.1e-53 213.8 174 83.3
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 1.4e-53 213.4 177 82.5
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.9e-53 213.0 174 81.6
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 2.5e-53 212.6 174 86.2
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 4.2e-53 211.8 174 84.5
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 4.2e-53 211.8 174 84.5
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 4.2e-53 211.8 176 84.7
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 7.1e-53 211.1 176 85.2
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 7.1e-53 211.1 174 84.5
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 7.1e-53 211.1 176 85.8
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 9.3e-53 210.7 179 79.9
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 1.6e-52 209.9 177 81.4
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 2.1e-52 209.5 177 78.0
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 2.7e-52 209.1 176 84.1
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 2.7e-52 209.1 177 80.8
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 2.7e-52 209.1 180 80.6
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 4.6e-52 208.4 176 82.4
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 6.1e-52 208.0 176 85.2
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 7.9e-52 207.6 175 84.6
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 7.9e-52 207.6 176 82.4
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 7.9e-52 207.6 176 84.1
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 3.9e-51 205.3 179 82.1
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 3.9e-51 205.3 201 55.2
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 8.7e-51 204.1 177 78.5
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.1e-50 203.8 179 81.0
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.1e-50 203.8 179 77.7
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 3.3e-50 202.2 175 80.6
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 5.7e-50 201.4 179 80.4
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 1.6e-49 199.9 175 79.4
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 2.2e-49 199.5 176 81.2
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 4.8e-49 198.4 174 81.6
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.4e-48 196.8 176 60.2
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 1.4e-48 196.8 174 81.0
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 2.4e-48 196.1 178 59.6
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 4.1e-48 195.3 175 80.6
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 4.1e-48 195.3 252 46.8
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.5e-47 193.4 176 59.1
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.5e-47 193.4 176 59.1
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 4.5e-47 191.8 173 79.2
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 1.3e-46 190.3 174 79.9
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 6.5e-46 188.0 176 76.7
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 8.5e-46 187.6 155 87.1
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 1.4e-45 186.8 175 55.4
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 1.4e-45 186.8 193 50.8
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 1.6e-44 183.3 179 55.3
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 3.6e-44 182.2 204 64.2
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.4e-43 180.3 145 91.0
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.7e-41 173.3 173 54.3
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 8.2e-41 171.0 192 72.4
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 8.2e-41 171.0 173 56.1
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 6.9e-40 167.9 175 50.9
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 1.5e-39 166.8 174 46.6
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 3.4e-39 165.6 176 52.8
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 1.3e-38 163.7 175 49.1
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.9e-38 162.5 176 72.2
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 3.8e-38 162.2 138 86.2
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.1e-37 160.6 151 52.3
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.9e-37 159.8 128 86.7
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.1e-36 154.8 138 84.8
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.4e-35 153.7 138 74.6
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.3e-35 152.9 84 82.1
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 5.1e-35 151.8 143 81.8
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 5.7e-34 148.3 86 82.6
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 2.8e-33 146.0 177 65.5
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 7.0e-32 141.4 174 67.8
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 9.1e-32 141.0 154 73.4
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.2e-31 140.6 154 73.4
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 2.2e-30 136.3 87 75.9
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 2.5e-29 132.9 87 72.4
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 3.9e-27 125.6 216 38.9
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.5e-26 123.6 165 46.7
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 5.7e-26 121.7 86 64.0
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 7.4e-26 121.3 123 53.7
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 3.7e-25 119.0 120 54.2
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 3.8e-22 109.0 128 47.7
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 6.3e-17 91.7 118 39.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 1.6e-12 77.0 122 41.0
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 3.0e-11 72.8 53 67.9
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 2.2e-09 66.6 36 86.1
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.3e-09 65.1 36 83.3
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 3.1e-08 62.8 36 80.6
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 9.1e-08 61.2 36 75.0
RcHm_v2.0_Chr4g0394581 Rosa chinensis HOM05D004344 ORTHO05D006026 5.0e-06 55.5 44 63.6


User provided reference genes

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