Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.4e-191 672.2 374 100.0
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.4e-138 496.9 367 77.7
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 2.6e-137 492.7 370 77.0
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 1.2e-123 447.2 355 74.4
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 3.0e-122 442.6 362 73.2
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.5e-121 440.3 364 72.0
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 2.0e-121 439.9 362 70.4
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.3e-117 427.2 363 70.8
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 8.6e-117 424.5 366 66.4
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.5e-116 422.9 356 71.1
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 8.9e-114 414.5 353 68.0
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 3.5e-110 402.5 363 63.1
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.3e-109 400.6 363 64.7
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 6.6e-109 398.3 356 68.3
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 2.8e-107 392.9 364 63.2
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 6.2e-107 391.7 361 63.4
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.1e-106 391.0 360 64.4
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.0e-106 389.0 361 63.2
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 8.9e-106 387.9 462 56.7
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 1.2e-105 387.5 354 66.4
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 1.5e-105 387.1 361 66.2
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 8.3e-104 381.3 358 63.7
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.4e-103 379.8 364 62.6
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 7.1e-103 378.3 356 66.3
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 4.6e-102 375.6 363 62.3
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 1.0e-101 374.4 359 64.6
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 5.1e-101 372.1 357 65.8
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 1.2e-99 367.5 364 63.7
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.6e-99 367.1 355 63.4
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 1.6e-99 367.1 366 61.2
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 2.8e-99 366.3 355 63.4
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 2.8e-99 366.3 355 62.8
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 8.1e-99 364.8 360 59.4
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 3.1e-98 362.8 362 59.9
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 4.0e-98 362.5 365 60.5
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 5.2e-98 362.1 363 63.1
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 6.8e-98 361.7 363 62.8
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 6.8e-98 361.7 358 60.9
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 1.2e-97 360.9 389 57.8
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.5e-97 360.5 362 60.5
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 1.5e-97 360.5 364 61.5
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 4.4e-97 359.0 365 62.5
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 9.9e-97 357.8 356 59.6
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 3.8e-96 355.9 363 62.0
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 1.1e-95 354.4 360 60.6
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.2e-95 352.4 363 60.3
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 9.2e-95 351.3 362 59.4
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 9.2e-95 351.3 369 60.4
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 7.8e-94 348.2 365 61.4
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 1.3e-93 347.4 362 60.2
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 6.6e-93 345.1 360 59.7
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 1.1e-92 344.4 371 58.8
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.9e-92 343.6 282 68.4
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 7.3e-92 341.7 374 63.4
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.1e-91 340.1 362 58.6
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 6.2e-91 338.6 286 66.8
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.4e-90 337.4 337 61.7
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 2.4e-90 336.7 365 57.8
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 9.0e-90 334.7 365 57.3
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 9.0e-90 334.7 362 58.8
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 1.5e-89 334.0 362 58.8
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 1.5e-89 334.0 358 58.7
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.0e-89 333.6 362 57.7
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 2.6e-89 333.2 358 57.0
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 3.4e-89 332.8 368 57.6
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 7.6e-89 331.6 370 57.8
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 7.6e-89 331.6 362 58.3
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 9.9e-89 331.3 368 60.6
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 2.2e-88 330.1 267 71.9
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 2.9e-88 329.7 368 57.3
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 3.8e-88 329.3 368 58.7
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.4e-87 326.6 360 60.6
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 9.3e-87 324.7 401 53.9
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.7e-85 320.5 359 56.8
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.3e-85 320.1 290 69.0
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 3.0e-85 319.7 368 56.2
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 3.9e-85 319.3 360 55.8
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 8.7e-85 318.2 359 59.3
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 8.7e-85 318.2 359 59.6
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.5e-84 316.6 370 58.1
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 4.3e-84 315.8 373 58.7
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 9.6e-84 314.7 371 54.7
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 2.8e-83 313.2 355 58.0
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 3.6e-83 312.8 354 57.6
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 4.8e-83 312.4 386 53.4
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 4.8e-83 312.4 366 53.8
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 2.6e-81 306.6 364 53.8
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 2.6e-81 306.6 362 53.9
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 5.8e-81 305.4 365 55.9
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 9.9e-81 304.7 362 56.1
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 2.4e-79 300.1 269 62.8
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.2e-79 299.7 361 54.8
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.0e-77 294.7 364 54.4
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 1.0e-77 294.7 372 53.0
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 3.3e-76 289.7 372 53.2
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 4.3e-76 289.3 360 53.3
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 7.4e-76 288.5 371 52.3
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 9.6e-76 288.1 387 51.4
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 1.1e-74 284.6 288 62.5
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 3.1e-74 283.1 463 46.2
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 9.0e-74 281.6 386 49.7
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.0e-73 280.4 353 53.0
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 3.2e-71 273.1 362 51.9
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 5.5e-71 272.3 347 53.9
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 2.1e-70 270.4 363 51.5
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 2.7e-70 270.0 370 51.1
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 3.9e-69 266.2 270 62.2
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 5.1e-69 265.8 353 51.3
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.5e-68 264.2 388 48.5
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 9.6e-68 261.5 366 51.4
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 3.1e-66 256.5 352 50.9
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 7.6e-65 251.9 356 49.4
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 1.2e-62 244.6 348 48.9
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.2e-59 233.8 353 47.0
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 4.1e-58 229.6 353 47.9
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 6.9e-58 228.8 306 49.0
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 8.5e-56 221.9 172 77.3
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 7.2e-55 218.8 356 44.4
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 3.0e-53 213.4 267 53.6
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 8.8e-53 211.8 348 44.8
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 6.9e-50 202.2 371 40.4
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 1.0e-48 198.4 277 49.8
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 9.4e-47 191.8 327 44.6
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 6.7e-45 185.7 277 47.3
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.4e-42 177.9 277 41.2
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 2.9e-40 170.2 360 40.6
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 5.3e-34 149.4 335 38.2
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 8.3e-27 125.6 320 33.8
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.8e-26 124.4 341 29.3
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 2.7e-25 120.6 195 45.1
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.9e-24 117.1 213 45.1
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 6.5e-24 115.9 100 62.0
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 1.6e-22 111.3 153 54.9
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 2.7e-22 110.5 298 31.9
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 4.7e-22 109.8 188 41.0
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 8.8e-21 105.5 262 32.4
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 1.3e-19 101.7 186 38.2
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 8.3e-19 99.0 174 44.3
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 3.5e-17 93.6 287 27.2
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 3.5e-17 93.6 197 37.6
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 3.8e-16 90.1 160 38.1
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 5.5e-15 86.3 79 59.5
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 3.6e-14 83.6 197 36.5
Potri.002G130800 Populus trichocarpa HOM05D028338 ORTHO05D050528 1.4e-10 71.6 169 34.3
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 1.4e-10 71.6 108 44.4
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 1.2e-09 68.6 249 25.3
Sabra02G0102900 Salix brachista HOM05D028338 ORTHO05D050528 1.6e-09 68.2 180 32.8
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.0e-08 65.5 122 47.5
Zm00001eb268130 Zea mays HOM05D004401 ORTHO05D005169 1.6e-06 58.2 110 39.1
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 8.0e-06 55.8 72 52.8


User provided reference genes

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