Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031746 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.9e-238 828.2 424 100.0
CSS0000590 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 9.6e-165 583.9 540 66.1
CSS0012094 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 9.6e-165 583.9 540 66.1
CSS0039643 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.3e-145 520.4 470 66.4
Dinv16910 Davidia involucrata HOM05D006146 ORTHO05D007924 6.3e-132 474.9 544 54.2
vmacro20300 Vaccinium macrocarpon HOM05D006146 ORTHO05D007924 7.0e-131 471.5 542 54.6
Cfa017174 Carpinus fangiana HOM05D006146 ORTHO05D007924 4.4e-125 452.2 528 52.3
Haze_21031 Corylus avellana HOM05D006146 ORTHO05D007924 2.6e-122 443.0 527 51.0
TAR636G3413 Trochodendron aralioides HOM05D006146 ORTHO05D007924 8.0e-119 431.4 539 49.7
QL07p034872 Quercus lobata HOM05D006146 ORTHO05D007924 3.3e-117 426.0 541 49.0
Lj2C71G10 Lonicera japonica HOM05D003030 ORTHO05D003610 7.5e-117 424.9 529 49.5
CiPaw.09G211700 Carya illinoinensis HOM05D006146 ORTHO05D007924 4.8e-116 422.2 539 49.2
FAN14G4754 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.1e-115 421.0 531 47.8
Manes.08G094300 Manihot esculenta HOM05D006146 ORTHO05D007924 5.3e-115 418.7 527 49.0
RcHm_v2.0_Chr3g0462541 Rosa chinensis HOM05D006146 ORTHO05D007924 1.2e-114 417.5 543 47.0
Prupe.6G280600 Prunus persica HOM05D006146 ORTHO05D007924 4.5e-114 415.6 544 48.3
Thecc.05G012100 Theobroma cacao HOM05D006146 ORTHO05D007924 4.5e-114 415.6 540 48.1
Peaxi162Scf01132g00127 Petunia axillaris HOM05D006146 ORTHO05D007924 7.7e-114 414.8 539 49.5
FvH4_6g11110 Fragaria vesca HOM05D006146 ORTHO05D007924 1.0e-113 414.5 531 47.5
Cc06_g01080 Coffea canephora HOM05D006146 ORTHO05D007924 8.5e-113 411.4 543 48.6
FAN02G2047 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.5e-112 410.6 531 47.3
Oeu042663.2 Olea europaea HOM05D006146 ORTHO05D007924 5.5e-112 408.7 528 47.9
Gohir.A09G166500 Gossypium hirsutum HOM05D006146 ORTHO05D007924 7.2e-112 408.3 550 46.7
Actinidia11568 Actinidia chinensis HOM05D006146 ORTHO05D007924 1.2e-109 401.0 508 51.6
Gorai.006G183800 Gossypium raimondii HOM05D006146 ORTHO05D007924 1.2e-109 401.0 555 45.9
Atru.chr8.2278 Acer truncatum HOM05D006146 ORTHO05D007924 1.5e-109 400.6 543 47.1
CANSAT35G1531 Cannabis sativa HOM05D006146 ORTHO05D007924 2.6e-109 399.8 555 45.8
Gohir.D09G162100 Gossypium hirsutum HOM05D006146 ORTHO05D007924 4.4e-109 399.1 550 46.0
Nn2g10908 Nelumbo nucifera HOM05D006146 ORTHO05D007924 9.8e-109 397.9 547 46.1
Lj1g0005300 Lotus japonicus HOM05D006146 ORTHO05D007924 2.8e-108 396.4 525 49.0
PGSC0003DMG400006271 Solanum tuberosum HOM05D006146 ORTHO05D007924 2.8e-108 396.4 557 46.5
MD00G1062300 Malus domestica HOM05D006146 ORTHO05D007924 1.4e-107 394.0 544 46.9
Ciclev10011366m.g Citrus clementina HOM05D006146 ORTHO05D007924 2.4e-107 393.3 543 47.9
Sopen09g001100 Solanum pennellii HOM05D006146 ORTHO05D007924 3.5e-106 389.4 543 45.9
CAN.G133.15 Capsicum annuum HOM05D006146 ORTHO05D007924 1.3e-105 387.5 537 47.1
Solyc09g005120.3 Solanum lycopersicum HOM05D006146 ORTHO05D007924 1.3e-105 387.5 543 45.5
TWI53G1621 Tripterygium wilfordii HOM05D006146 ORTHO05D007924 3.8e-105 386.0 553 46.5
SGA_v2.0_scaffold85G26717 Striga asiatica HOM05D006146 ORTHO05D007924 5.0e-105 385.6 556 45.3
MD12G1172300 Malus domestica HOM05D006146 ORTHO05D007924 3.6e-103 379.4 546 45.2
MELO3C009146.2 Cucumis melo HOM05D006146 ORTHO05D007924 4.7e-103 379.0 541 46.0
SalBow5G2678 Salvia bowleyana HOM05D006146 ORTHO05D007924 1.0e-102 377.9 538 44.6
ClCG10G022330 Citrullus lanatus HOM05D006146 ORTHO05D007924 3.0e-102 376.3 527 45.7
arahy.Tifrunner.gnm1.ann1.S46L09 Arachis hypogaea HOM05D006146 ORTHO05D007924 4.0e-102 375.9 557 44.7
MSTRG.5562 Avicennia marina HOM05D006146 ORTHO05D007924 4.0e-102 375.9 543 44.8
FAN05G4820 Fragaria x ananassa HOM05D006146 ORTHO05D007924 5.2e-102 375.6 527 44.8
THA.LOC104816204 Tarenaya hassleriana HOM05D006146 ORTHO05D007924 6.8e-102 375.2 534 43.3
Glyma.18G204000 Glycine max HOM05D006146 ORTHO05D007924 1.2e-101 374.4 535 46.4
CsaV3_3G033560 Cucumis sativus L. HOM05D006146 ORTHO05D007924 2.0e-101 373.6 540 44.8
arahy.Tifrunner.gnm1.ann1.D29HQK Arachis hypogaea HOM05D006146 ORTHO05D007924 2.6e-101 373.2 558 44.1
Medtr7g069480 Medicago truncatula HOM05D006146 ORTHO05D007924 1.3e-100 370.9 537 46.0
Dinv13137 Davidia involucrata HOM05D006146 ORTHO05D007924 8.3e-100 368.2 487 49.5
Migut.J00133 Erythranthe guttata HOM05D006146 ORTHO05D007924 2.4e-99 366.7 543 44.8
Nitab4.5_0000195g0240 Nicotiana tabacum HOM05D006146 ORTHO05D007924 3.1e-99 366.3 543 45.3
Lsat_1_v5_gn_8_100801 Lactuca sativa HOM05D006146 ORTHO05D007924 4.1e-99 365.9 525 44.0
Carub.0003s0810 Capsella rubella HOM05D006146 ORTHO05D007924 9.2e-99 364.8 543 44.0
Psat3g126240 Pisum sativum HOM05D006146 ORTHO05D007924 9.2e-99 364.8 552 45.1
Aqoxy4G02469 Aquilegia oxysepala HOM05D006146 ORTHO05D007924 1.6e-98 364.0 543 43.8
HanXRQChr12g0383181 Helianthus annuus HOM05D006146 ORTHO05D007924 3.5e-98 362.8 528 43.2
ECA236G4528 Erigeron canadensis HOM05D006146 ORTHO05D007924 7.8e-98 361.7 527 44.6
Eucgr.A00544 Eucalyptus grandis HOM05D006146 ORTHO05D007924 7.8e-98 361.7 541 44.5
PSO384G0066 Papaver somniferum HOM05D006146 ORTHO05D007924 1.7e-97 360.5 546 44.0
Sed0026013 Sechium edule HOM05D006146 ORTHO05D007924 1.7e-97 360.5 540 44.6
Eucgr.A00545 Eucalyptus grandis HOM05D006146 ORTHO05D007924 2.3e-97 360.1 518 46.3
Gohir.A04G093600 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.5e-96 357.5 550 43.8
Rhsim05G0219200 Rhododendron simsii HOM05D006146 ORTHO05D007924 1.5e-96 357.5 548 45.6
Gorai.012G116800 Gossypium raimondii HOM05D006146 ORTHO05D007924 2.5e-96 356.7 530 44.7
CSS0015893 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 7.3e-96 355.1 432 54.9
AL3G19990 Arabidopsis lyrata HOM05D006146 ORTHO05D007924 9.5e-96 354.8 545 43.1
Thhalv10020374m.g Eutrema salsugineum HOM05D006146 ORTHO05D007924 6.1e-95 352.1 549 42.4
PSO339G2519 Papaver somniferum HOM05D006146 ORTHO05D007924 6.1e-95 352.1 546 42.9
Glyma.07G152900 Glycine max HOM05D006146 ORTHO05D007924 1.0e-94 351.3 538 44.2
AUR62030469 Chenopodium quinoa HOM05D006146 ORTHO05D007924 1.8e-94 350.5 555 41.8
Hund14889 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.8e-94 350.5 548 42.3
MBI03_g05510_MAGBIO Magnolia biondii HOM05D006146 ORTHO05D007924 8.9e-94 348.2 528 44.1
DCAR_015389 Daucus carota HOM05D006146 ORTHO05D007924 4.4e-93 345.9 518 45.9
EL10Ac5g12530 Beta vulgaris HOM05D006146 ORTHO05D007924 1.7e-92 344.0 544 42.5
TPR.G35447 Trifolium pratense HOM05D006146 ORTHO05D007924 3.7e-92 342.8 532 43.6
CARHR083310 Cardamine hirsuta HOM05D006146 ORTHO05D007924 6.4e-92 342.0 530 43.2
Lalb_Chr03g0043371 Lupinus albus HOM05D006146 ORTHO05D007924 8.3e-92 341.7 546 43.6
AT3G08970 Arabidopsis thaliana HOM05D006146 ORTHO05D007924 1.4e-91 340.9 556 40.8
unitig_578.g15902 Utricularia gibba HOM05D003030 ORTHO05D003610 2.4e-91 340.1 539 43.0
Aa31LG5G18940 Aethionema arabicum HOM05D006146 ORTHO05D007924 2.0e-90 337.0 534 42.3
Ah.12g058880 Amaranthus hybridus HOM05D006146 ORTHO05D007924 3.5e-90 336.3 571 40.3
Ca_07664_v3 Cicer arietinum L. HOM05D006146 ORTHO05D007924 3.5e-90 336.3 501 45.3
CSS0011042 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 1.5e-88 330.9 428 52.8
Nitab4.5_0003654g0010 Nicotiana tabacum HOM05D006146 ORTHO05D007924 1.9e-88 330.5 530 42.6
PGR031G2778 Punica granatum HOM05D006146 ORTHO05D007924 2.0e-85 320.5 542 41.7
BraA05t22771Z Brassica rapa HOM05D006146 ORTHO05D007924 2.9e-84 316.6 555 39.5
HPP92_025101 Vanilla planifolia HOM05D006146 ORTHO05D007924 3.7e-84 316.2 522 40.2
Potri.016G120000 Populus trichocarpa HOM05D006146 ORTHO05D007924 3.2e-83 313.2 384 49.2
VMungo1383G3422 Vigna mungo HOM05D006146 ORTHO05D007924 3.2e-83 313.2 546 41.0
AUR62010446 Chenopodium quinoa HOM05D006146 ORTHO05D007924 5.4e-83 312.4 503 40.4
Sp3g07390 Schrenkiella parvula HOM05D006146 ORTHO05D007924 4.6e-82 309.3 547 38.9
A05p39870 Brassica napus HOM05D006146 ORTHO05D007924 1.0e-81 308.1 561 38.7
Gohir.D04G132900 Gossypium hirsutum HOM05D006146 ORTHO05D007924 1.0e-81 308.1 562 40.4
Phvul.008G095600 Phaseolus vulgaris HOM05D006146 ORTHO05D007924 2.3e-81 307.0 553 40.1
Zm00001eb396940 Zea mays HOM05D006146 ORTHO05D007924 3.0e-81 306.6 534 38.8
COL.COLO4_14502 Corchorus olitorius HOM05D006146 ORTHO05D007924 5.1e-81 305.8 498 43.2
GSVIVG01003939001 Vitis vinifera HOM05D006146 ORTHO05D007924 1.5e-80 304.3 417 44.8
ATR0681G078 Amborella trichopoda HOM05D006146 ORTHO05D007924 1.1e-78 298.1 529 38.4
BolC5t34544H Brassica oleracea HOM05D006146 ORTHO05D007924 2.3e-78 297.0 569 37.8
C05p58910 Brassica napus HOM05D006146 ORTHO05D007924 5.8e-77 292.4 561 37.6
Sc22g0002570 Simmondsia chinensis HOM05D006146 ORTHO05D007924 1.9e-75 287.3 387 44.4
SHI12853 Sapria himalayana HOM05D006146 ORTHO05D007924 2.4e-75 287.0 521 37.6
CDE06G0106 Ceratophyllum demersum HOM05D003030 ORTHO05D003610 7.1e-75 285.4 548 38.0
Sabra16G0115900 Salix brachista HOM05D006146 ORTHO05D007924 8.6e-73 278.5 377 46.2
BcaC05g29631 Brassica carinata HOM05D006146 ORTHO05D007924 4.3e-72 276.2 531 38.4
Os03g0293000 Oryza sativa ssp. japonica HOM05D006146 ORTHO05D007924 2.2e-68 263.8 497 36.4
Glyma.16G098700 Glycine max HOM05D006146 ORTHO05D007924 6.6e-65 252.3 387 43.2
Hma1.2p1_0362F.1_g136590 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 8.4e-60 235.3 275 52.4
Hma1.2p1_0362F.1_g136580 Hydrangea macrophylla HOM05D006146 ORTHO05D007924 2.7e-58 230.3 288 50.0
QL08p015836 Quercus lobata HOM05D006146 ORTHO05D007924 3.5e-58 229.9 291 49.8
SEGI_31782 Sequoiadendron giganteum HOM05D006146 ORTHO05D007924 4.3e-56 223.0 549 32.8
Hund10973 Selenicereus undatus HOM05D006146 ORTHO05D007924 1.3e-55 221.5 322 45.7
CSS0030843 Camellia sinensis var. sinensis HOM05D006146 ORTHO05D007924 2.2e-52 210.7 366 43.4
FAN09G2516 Fragaria x ananassa HOM05D006146 ORTHO05D007924 1.8e-41 174.5 207 48.8
Cpa.g.sc120.50 Carica papaya HOM05D006146 ORTHO05D007924 7.4e-40 169.1 210 46.7
Hund10972 Selenicereus undatus HOM05D006146 ORTHO05D007924 7.7e-29 132.5 174 46.0
Haze_20655 Corylus avellana HOM05D006146 ORTHO05D007924 2.7e-26 124.0 186 43.5
AagrBONN_evm.TU.Sc2ySwM_228.96 Anthoceros agrestis HOM05D006146 ORTHO05D007924 6.1e-26 122.9 337 28.2
SMO347G0184 Selaginella moellendorffii HOM05D006146 ORTHO05D007924 2.0e-24 117.9 524 25.4
Pp3c20_14730 Physcomitrium patens HOM05D006146 ORTHO05D007924 5.9e-21 106.3 581 23.4
Mapoly0184s0019 Marchantia polymorpha HOM05D006146 ORTHO05D007924 2.7e-18 97.4 577 23.9
Zm00001eb225170 Zea mays HOM05D006146 ORTHO05D007924 8.8e-17 92.4 159 38.4
Rhsim01G0279400 Rhododendron simsii HOM05D000036 ORTHO05D005472 2.6e-13 80.9 76 57.9
Zm00001eb032720 Zea mays HOM05D006146 ORTHO05D007924 1.1e-11 75.5 160 33.1
Rhsim05G0215400 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.7e-10 70.9 71 53.5
Thecc.05G011800 Theobroma cacao HOM05D006146 ORTHO05D007924 3.9e-09 67.0 78 46.2


User provided reference genes

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