Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031716 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 1.8e-299 1031.9 578 100.0
Actinidia39859 Actinidia chinensis HOM05D007575 ORTHO05D009611 7.6e-205 717.6 574 73.9
Actinidia11312 Actinidia chinensis HOM05D007575 ORTHO05D009611 2.6e-181 639.4 577 64.6
Rhsim09G0032600 Rhododendron simsii HOM05D007575 ORTHO05D009611 2.4e-174 616.3 578 61.6
vmacro00586 Vaccinium macrocarpon HOM05D007575 ORTHO05D009611 1.5e-160 570.5 627 59.8
GSVIVG01013567001 Vitis vinifera HOM05D007575 ORTHO05D009611 1.6e-149 533.9 580 54.8
Lj6A70T54 Lonicera japonica HOM05D007575 ORTHO05D009611 4.5e-149 532.3 683 49.6
QL10p045159 Quercus lobata HOM05D007575 ORTHO05D009611 3.6e-146 522.7 576 54.2
Cfa015783 Carpinus fangiana HOM05D007575 ORTHO05D009611 4.0e-145 519.2 577 53.0
Haze_00711 Corylus avellana HOM05D007575 ORTHO05D009611 1.2e-144 517.7 577 53.6
CiPaw.01G103900 Carya illinoinensis HOM05D007575 ORTHO05D009611 2.7e-141 506.5 583 51.6
Prupe.1G189300 Prunus persica HOM05D007575 ORTHO05D009611 7.7e-141 505.0 589 52.1
Sabra07G0100200 Salix brachista HOM05D007575 ORTHO05D009611 1.2e-138 497.7 579 53.2
TAR633G2419 Trochodendron aralioides HOM05D007575 ORTHO05D009611 2.0e-136 490.3 579 51.8
Manes.11G115700 Manihot esculenta HOM05D007575 ORTHO05D009611 7.0e-134 481.9 579 50.6
Potri.017G036600 Populus trichocarpa HOM05D007575 ORTHO05D009611 7.0e-134 481.9 586 52.4
CSS0007449 Camellia sinensis var. sinensis HOM05D007575 ORTHO05D009611 2.3e-132 476.9 354 85.6
MD04G1038600 Malus domestica HOM05D007575 ORTHO05D009611 1.2e-130 471.1 580 50.7
Cc03_g13380 Coffea canephora HOM05D007575 ORTHO05D009611 2.2e-127 460.3 577 49.0
Oeu050351.1 Olea europaea HOM05D007575 ORTHO05D009611 3.7e-127 459.5 575 49.6
SalBow6G5467 Salvia bowleyana HOM05D007575 ORTHO05D009611 2.0e-125 453.8 581 49.2
Atru.chr3.1619 Acer truncatum HOM05D007575 ORTHO05D009611 5.9e-125 452.2 546 51.1
Thecc.04G183800 Theobroma cacao HOM05D007575 ORTHO05D009611 5.9e-125 452.2 576 49.1
Ciclev10019508m.g Citrus clementina HOM05D007575 ORTHO05D009611 1.7e-124 450.7 582 48.3
Migut.N00470 Erythranthe guttata HOM05D007575 ORTHO05D009611 6.6e-124 448.7 578 49.3
Gohir.A10G134800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 1.2e-122 444.5 580 48.6
RcHm_v2.0_Chr4g0407361 Rosa chinensis HOM05D007575 ORTHO05D009611 1.8e-121 440.7 609 52.1
CANSAT78G0404 Cannabis sativa HOM05D007575 ORTHO05D009611 8.9e-121 438.3 577 47.8
FAN17G1632 Fragaria x ananassa HOM05D007575 ORTHO05D009611 1.2e-120 438.0 608 47.0
Duzib151G0056 Durio zibethinus HOM05D007575 ORTHO05D009611 1.5e-120 437.6 580 48.4
Gorai.011G145500 Gossypium raimondii HOM05D007575 ORTHO05D009611 1.5e-120 437.6 580 48.3
CAN.G710.64 Capsicum annuum HOM05D007575 ORTHO05D009611 2.6e-120 436.8 577 48.4
Gohir.D10G131800 Gossypium hirsutum HOM05D007575 ORTHO05D009611 2.6e-120 436.8 580 47.9
MSTRG.24588 Avicennia marina HOM05D007575 ORTHO05D009611 4.9e-119 432.6 582 48.1
FAN07G0850 Fragaria x ananassa HOM05D007575 ORTHO05D009611 1.6e-117 427.6 608 46.2
ECA233G3130 Erigeron canadensis HOM05D007575 ORTHO05D009611 2.0e-117 427.2 587 47.9
Eucgr.A00245 Eucalyptus grandis HOM05D007575 ORTHO05D009611 6.0e-117 425.6 582 47.3
FvH4_4g11270 Fragaria vesca HOM05D007575 ORTHO05D009611 6.0e-117 425.6 609 47.0
THA.LOC104803562 Tarenaya hassleriana HOM05D007575 ORTHO05D009611 1.5e-115 421.0 592 45.9
DCAR_027534 Daucus carota HOM05D007575 ORTHO05D009611 1.5e-112 411.0 575 44.7
Potri.007G123800 Populus trichocarpa HOM05D007575 ORTHO05D009611 2.0e-112 410.6 508 52.2
SGA_v2.0_scaffold406G51053 Striga asiatica HOM05D007575 ORTHO05D009611 3.4e-112 409.8 594 46.6
MELO3C011621.2 Cucumis melo HOM05D007575 ORTHO05D009611 1.3e-111 407.9 582 45.7
ClCG08G004240 Citrullus lanatus HOM05D007575 ORTHO05D009611 2.9e-111 406.8 587 46.0
HanXRQChr02g0057801 Helianthus annuus HOM05D007575 ORTHO05D009611 3.7e-111 406.4 581 45.6
Sabra17G0024000 Salix brachista HOM05D007575 ORTHO05D009611 3.7e-111 406.4 618 45.5
Aa31LG1G25020 Aethionema arabicum HOM05D007575 ORTHO05D009611 1.1e-110 404.8 589 45.0
Thhalv10001393m.g Eutrema salsugineum HOM05D007575 ORTHO05D009611 4.1e-110 402.9 583 44.3
Nn1g09745 Nelumbo nucifera HOM05D007575 ORTHO05D009611 7.1e-110 402.1 588 44.6
Lj6A61T39 Lonicera japonica HOM05D007575 ORTHO05D009611 9.2e-110 401.7 412 57.5
CsaV3_6G003720 Cucumis sativus L. HOM05D007575 ORTHO05D009611 3.5e-109 399.8 585 44.6
Sopen09g036470 Solanum pennellii HOM05D007575 ORTHO05D009611 1.0e-108 398.3 573 44.7
Lsat_1_v5_gn_6_54841 Lactuca sativa HOM05D007575 ORTHO05D009611 2.3e-108 397.1 576 44.1
Gorai.009G350900 Gossypium raimondii HOM05D007575 ORTHO05D009611 6.6e-108 395.6 589 44.5
Gohir.A05G326900 Gossypium hirsutum HOM05D007575 ORTHO05D009611 1.9e-107 394.0 587 44.8
Gohir.D05G326300 Gossypium hirsutum HOM05D007575 ORTHO05D009611 4.3e-107 392.9 589 44.3
Carub.0004s2568 Capsella rubella HOM05D007575 ORTHO05D009611 9.5e-107 391.7 588 43.7
Sed0001943 Sechium edule HOM05D007575 ORTHO05D009611 4.7e-106 389.4 587 45.1
PGR083G2249 Punica granatum HOM05D007575 ORTHO05D009611 1.4e-105 387.9 579 44.2
FAN22G0659 Fragaria x ananassa HOM05D007575 ORTHO05D009611 6.8e-105 385.6 621 43.6
Sp4g25330 Schrenkiella parvula HOM05D007575 ORTHO05D009611 1.5e-104 384.4 586 43.7
AL4G41870 Arabidopsis lyrata HOM05D007575 ORTHO05D009611 1.4e-102 377.9 582 42.8
MBI08_g10298_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 3.2e-102 376.7 635 40.3
Peaxi162Scf00286g00233 Petunia axillaris HOM05D007575 ORTHO05D009611 1.0e-100 371.7 599 43.4
AT2G43210 Arabidopsis thaliana HOM05D007575 ORTHO05D009611 1.5e-99 367.9 583 42.5
BraA04t18714Z Brassica rapa HOM05D001811 ORTHO05D001738 7.1e-94 349.0 567 42.3
unitig_8.g3630 Utricularia gibba HOM05D007575 ORTHO05D009611 3.6e-90 336.7 600 40.5
C04p70190 Brassica napus HOM05D007575 ORTHO05D009611 1.2e-88 331.6 602 40.4
A04p32490 Brassica napus HOM05D007575 ORTHO05D009611 1.3e-87 328.2 619 39.9
COL.COLO4_24385 Corchorus olitorius HOM05D001792 ORTHO05D001821 5.4e-86 322.8 581 40.3
ATR0743G244 Amborella trichopoda HOM05D007575 ORTHO05D009611 1.3e-84 318.2 593 37.6
HPP92_002813 Vanilla planifolia HOM05D007575 ORTHO05D009611 1.6e-82 311.2 585 37.6
Nitab4.5_0004962g0010 Nicotiana tabacum HOM05D007575 ORTHO05D009611 2.8e-82 310.5 498 43.2
Nitab4.5_0001049g0060 Nicotiana tabacum HOM05D007575 ORTHO05D009611 3.1e-81 307.0 498 43.0
CDE09G0236 Ceratophyllum demersum HOM05D007575 ORTHO05D009611 7.6e-80 302.4 579 36.1
HPP92_002869 Vanilla planifolia HOM05D007575 ORTHO05D009611 3.8e-79 300.1 553 37.3
PSO210G6745 Papaver somniferum HOM05D007575 ORTHO05D009611 1.1e-78 298.5 594 37.0
Solyc09g098550.4 Solanum lycopersicum HOM05D007575 ORTHO05D009611 1.6e-77 294.7 495 40.8
CARHR138270 Cardamine hirsuta HOM05D007575 ORTHO05D009611 4.8e-74 283.1 511 40.7
Hma1.2p1_1477F.1_g285910 Hydrangea macrophylla HOM05D007575 ORTHO05D009611 1.8e-73 281.2 452 46.9
Os11g0293900 Oryza sativa ssp. japonica HOM05D007575 ORTHO05D009611 2.0e-72 277.7 591 35.0
BcaNung07370 Brassica carinata HOM05D007575 ORTHO05D009611 7.4e-67 259.2 499 39.5
PSO832G0541 Papaver somniferum HOM05D007575 ORTHO05D009611 3.9e-60 236.9 496 35.9
SalBow5G2148 Salvia bowleyana HOM05D007575 ORTHO05D009611 5.0e-39 166.8 174 56.3
SalBow5G4021 Salvia bowleyana HOM05D007575 ORTHO05D009611 5.0e-39 166.8 174 56.3
SEGI_13760 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 2.1e-37 161.4 416 32.2
Pp3c20_2320 Physcomitrium patens HOM05D007575 ORTHO05D009611 4.4e-35 153.7 576 28.3
TAR633G1182 Trochodendron aralioides HOM05D007575 ORTHO05D009611 5.7e-35 153.3 172 51.2
Mapoly0164s0007 Marchantia polymorpha HOM05D007575 ORTHO05D009611 1.2e-32 145.6 545 27.0
BcaB06g29288 Brassica carinata HOM05D007575 ORTHO05D009611 6.5e-31 139.8 127 54.3
Eucgr.A00051 Eucalyptus grandis HOM05D007575 ORTHO05D009611 1.1e-30 139.0 175 50.9
Lsat_1_v5_gn_5_138981 Lactuca sativa HOM05D007575 ORTHO05D009611 1.2e-29 135.6 379 31.9
SMO116G0403 Selaginella moellendorffii HOM05D007575 ORTHO05D009611 6.1e-29 133.3 567 28.0
Zm00001eb198990 Zea mays HOM05D007575 ORTHO05D009611 2.3e-28 131.3 221 39.4
AagrBONN_evm.TU.Sc2ySwM_344.3290 Anthoceros agrestis HOM05D007575 ORTHO05D009611 2.8e-26 124.4 479 27.8
SEGI_03248 Sequoiadendron giganteum HOM05D007575 ORTHO05D009611 2.7e-24 117.9 172 44.8
PGSC0003DMG400021612 Solanum tuberosum HOM05D007575 ORTHO05D009611 8.0e-21 106.3 76 69.7
CBR_g123 Chara braunii HOM05D007575 ORTHO05D009611 8.0e-13 79.7 746 22.5
MBI08_g05086_MAGBIO Magnolia biondii HOM05D007575 ORTHO05D009611 3.5e-08 64.3 56 62.5
ECA240G2117 Erigeron canadensis HOM05D002884 ORTHO05D003178 3.0e-07 61.2 76 39.5
Sc22g0000260 Simmondsia chinensis HOM05D002884 ORTHO05D003178 5.0e-07 60.5 70 41.4
Sed0012052 Sechium edule HOM05D002884 ORTHO05D003178 1.1e-06 59.3 75 36.0
Gohir.A09G193001 Gossypium hirsutum HOM05D002884 ORTHO05D003178 2.5e-06 58.2 80 33.8
Gohir.A12G225400 Gossypium hirsutum HOM05D002884 ORTHO05D003178 3.3e-06 57.8 79 32.9
HPP92_007483 Vanilla planifolia HOM05D002436 ORTHO05D002754 4.3e-06 57.4 85 35.3
HanXRQChr13g0416781 Helianthus annuus HOM05D002884 ORTHO05D003178 7.3e-06 56.6 86 34.9
MSTRG.12015 Avicennia marina HOM05D002884 ORTHO05D003178 9.5e-06 56.2 70 38.6
CANSAT21G2344 Cannabis sativa HOM05D002884 ORTHO05D003178 9.5e-06 56.2 76 36.8


User provided reference genes

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