Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.5e-113 412.1 208 100.0
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 2.3e-111 405.6 208 99.0
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 8.2e-85 317.4 247 68.4
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 3.1e-84 315.5 204 78.4
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 2.5e-81 305.8 208 72.6
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 9.4e-81 303.9 205 76.1
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 2.1e-80 302.8 210 74.8
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 1.0e-79 300.4 208 71.2
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 1.4e-79 300.1 210 72.4
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 8.8e-79 297.4 208 71.6
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.2e-78 297.0 206 70.9
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 7.5e-78 294.3 208 73.6
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 9.7e-78 293.9 204 73.5
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 9.7e-78 293.9 208 71.2
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 2.2e-77 292.7 208 70.7
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 2.8e-77 292.4 206 70.4
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 4.8e-77 291.6 204 75.0
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 8.2e-77 290.8 206 69.9
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-76 290.0 208 69.7
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 1.4e-76 290.0 208 71.6
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 7.0e-76 287.7 208 69.7
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 9.1e-76 287.3 205 70.7
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 1.2e-75 287.0 305 55.1
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 2.0e-75 286.2 208 70.2
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 2.7e-75 285.8 208 70.7
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 2.7e-75 285.8 208 70.2
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 3.8e-74 282.0 205 71.2
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 1.1e-73 280.4 189 72.5
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 1.5e-73 280.0 208 66.8
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 1.9e-73 279.6 208 69.7
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 1.9e-73 279.6 191 70.7
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 2.5e-73 279.3 347 49.9
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 3.2e-73 278.9 201 68.2
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 3.2e-73 278.9 211 68.7
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 3.2e-73 278.9 190 70.5
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 4.2e-73 278.5 208 68.3
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 7.2e-73 277.7 208 68.8
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 9.4e-73 277.3 193 70.5
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 9.4e-73 277.3 244 61.5
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.2e-72 276.9 207 66.7
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 1.6e-72 276.6 210 67.1
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 1.6e-72 276.6 196 69.9
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 1.0e-71 273.9 220 65.9
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 1.0e-71 273.9 215 66.5
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 1.8e-71 273.1 218 63.3
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.3e-71 272.7 209 66.5
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 3.0e-71 272.3 208 67.3
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 2.6e-70 269.2 198 66.7
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 3.4e-70 268.9 199 67.3
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 5.7e-70 268.1 208 64.9
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 7.5e-70 267.7 208 65.4
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.7e-69 266.5 210 64.3
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 2.8e-69 265.8 206 64.6
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 6.3e-69 264.6 205 64.9
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 4.1e-68 261.9 290 52.1
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 7.0e-68 261.2 188 67.6
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 1.2e-67 260.4 204 63.7
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 5.9e-67 258.1 188 69.7
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 7.7e-67 257.7 205 63.9
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 5.0e-66 255.0 188 68.6
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 1.5e-65 253.4 204 64.7
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 1.9e-65 253.1 204 64.7
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 3.3e-65 252.3 197 66.0
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.6e-64 250.0 197 63.5
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.6e-64 250.0 199 62.8
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 2.8e-64 249.2 189 64.0
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 3.6e-64 248.8 199 61.3
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 6.1e-64 248.1 208 62.0
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 8.0e-64 247.7 199 61.3
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 1.0e-63 247.3 192 64.1
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 1.4e-63 246.9 196 63.8
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 1.4e-63 246.9 199 61.3
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 1.4e-63 246.9 196 63.3
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 1.8e-63 246.5 199 60.3
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 1.8e-63 246.5 146 84.9
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 2.3e-63 246.1 208 62.5
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 4.0e-63 245.4 199 60.8
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 1.5e-62 243.4 188 63.3
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 5.7e-62 241.5 163 73.6
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 9.8e-62 240.7 188 61.2
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 9.8e-62 240.7 188 61.2
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 2.8e-61 239.2 191 61.3
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 3.7e-61 238.8 188 62.8
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 4.9e-61 238.4 188 61.7
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 4.9e-61 238.4 188 62.8
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 4.9e-61 238.4 189 62.4
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 8.3e-61 237.7 188 62.2
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.1e-60 237.3 208 58.2
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 1.4e-60 236.9 191 60.7
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 7.0e-60 234.6 188 61.7
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 7.0e-60 234.6 188 61.7
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 7.0e-60 234.6 209 59.8
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 5.9e-59 231.5 239 55.2
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.9e-58 229.2 181 64.1
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 8.6e-58 227.6 142 76.8
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 1.9e-57 226.5 203 61.1
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.8e-55 219.9 193 57.0
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 3.4e-54 215.7 191 60.2
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 4.4e-54 215.3 189 59.3
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.9e-49 199.9 123 82.1
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 5.6e-49 198.4 117 82.9
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 1.5e-46 190.3 162 60.5
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 2.4e-44 183.0 176 56.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 4.1e-44 182.2 169 57.4
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.2e-43 180.6 123 71.5
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 3.3e-41 172.6 193 48.7
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 2.1e-40 169.9 193 46.6
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 8.1e-40 167.9 204 44.1
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 1.1e-39 167.5 146 56.8
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 1.5e-38 163.7 209 48.8
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.0e-38 163.3 198 47.0
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 2.4e-36 156.4 110 70.0
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 1.2e-35 154.1 191 46.6
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 6.6e-34 148.3 107 68.2
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 1.2e-32 144.1 91 75.8
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 4.7e-32 142.1 110 63.6
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 2.9e-29 132.9 122 58.2
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 3.9e-26 122.5 136 54.4
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 5.3e-23 112.1 85 65.9
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.5e-22 110.5 75 73.3
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 4.4e-22 109.0 91 63.7
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.7e-18 97.1 89 55.1
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 3.0e-18 96.3 90 53.3
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.1e-18 95.5 89 52.8
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 5.1e-18 95.5 175 34.9
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 3.3e-17 92.8 89 52.8
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.8e-16 89.7 147 34.7
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 6.9e-15 85.1 202 32.2
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 7.6e-14 81.6 54 70.4
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 2.2e-13 80.1 86 53.5
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-12 77.4 52 67.3
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.6e-11 72.4 49 69.4
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 2.3e-10 70.1 53 69.8
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 5.1e-10 68.9 57 64.9
PRCOL_00004577 Prasinoderma coloniale HOM05D003641 ORTHO05D049026 4.0e-07 59.3 160 30.0
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 4.5e-06 55.8 50 60.0
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 4.5e-06 55.8 50 60.0
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 4.5e-06 55.8 50 60.0
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 4.5e-06 55.8 83 38.6


User provided reference genes

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