Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031701 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 4.9e-194 681.0 358 100.0
Dinv04847 Davidia involucrata HOM05D005518 ORTHO05D001269 1.2e-94 350.9 355 64.2
CSS0041106 Camellia sinensis var. sinensis HOM05D005518 ORTHO05D001269 8.6e-90 334.7 348 62.1
Dinv11102 Davidia involucrata HOM05D005518 ORTHO05D001269 8.0e-88 328.2 351 60.7
Actinidia16187 Actinidia chinensis HOM05D005518 ORTHO05D001269 3.4e-86 322.8 354 60.5
Actinidia36793 Actinidia chinensis HOM05D005518 ORTHO05D001269 3.4e-78 296.2 354 57.1
GSVIVG01003640001 Vitis vinifera HOM05D005518 ORTHO05D001269 2.7e-75 286.6 353 55.8
vmacro16655 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 2.2e-69 266.9 356 55.3
TAR626G1948 Trochodendron aralioides HOM05D005518 ORTHO05D001269 1.6e-67 260.8 359 51.0
Haze_07258 Corylus avellana HOM05D005518 ORTHO05D001269 1.6e-64 250.8 375 52.0
CANSAT80G2082 Cannabis sativa HOM05D005518 ORTHO05D001269 1.1e-63 248.1 369 50.7
Rhsim12G0172400 Rhododendron simsii HOM05D005518 ORTHO05D001269 1.1e-63 248.1 360 50.8
Thecc.03G124400 Theobroma cacao HOM05D005518 ORTHO05D001269 9.9e-62 241.5 361 51.2
Eucgr.K02750 Eucalyptus grandis HOM05D005518 ORTHO05D001269 7.8e-59 231.9 362 48.6
Gorai.006G270900 Gossypium raimondii HOM05D005518 ORTHO05D001269 1.0e-58 231.5 361 48.2
CiPaw.11G011000 Carya illinoinensis HOM05D005518 ORTHO05D001269 1.7e-58 230.7 347 52.4
Cpa.g.sc4.97 Carica papaya HOM05D005518 ORTHO05D001269 1.1e-57 228.0 356 48.3
RcHm_v2.0_Chr7g0190821 Rosa chinensis HOM05D005518 ORTHO05D001269 1.1e-57 228.0 363 47.9
QL10p004779 Quercus lobata HOM05D005518 ORTHO05D001269 2.5e-57 226.9 358 49.7
CiPaw.12G036400 Carya illinoinensis HOM05D005518 ORTHO05D001269 4.3e-57 226.1 346 50.3
Gohir.A09G245800 Gossypium hirsutum HOM05D005518 ORTHO05D001269 4.3e-57 226.1 360 48.1
Lj9A476T55 Lonicera japonica HOM05D005518 ORTHO05D001269 4.3e-57 226.1 328 50.9
Sabra12G0068800 Salix brachista HOM05D005518 ORTHO05D001269 5.6e-57 225.7 356 49.2
Gohir.D09G246400 Gossypium hirsutum HOM05D005518 ORTHO05D001269 9.6e-57 224.9 360 47.5
FAN13G1318 Fragaria x ananassa HOM05D005518 ORTHO05D001269 4.7e-56 222.6 366 47.0
Prupe.5G155700 Prunus persica HOM05D005518 ORTHO05D001269 6.2e-56 222.2 364 46.4
FAN08G0706 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.8e-55 220.7 365 46.6
FAN25G1054 Fragaria x ananassa HOM05D005518 ORTHO05D001269 1.8e-55 220.7 365 46.8
MD14G1162500 Malus domestica HOM05D005518 ORTHO05D001269 2.4e-55 220.3 352 48.6
FAN04G1413 Fragaria x ananassa HOM05D005518 ORTHO05D001269 5.2e-55 219.2 365 46.0
RcHm_v2.0_Chr1g0380401 Rosa chinensis HOM05D005518 ORTHO05D001269 5.2e-55 219.2 363 46.8
vmacro16712 Vaccinium macrocarpon HOM05D005518 ORTHO05D001269 5.2e-55 219.2 262 58.4
PGR044G0025 Punica granatum HOM05D005518 ORTHO05D001269 1.2e-54 218.0 360 46.4
TWI14G0969 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 1.5e-54 217.6 345 51.0
Atru.chr9.1022 Acer truncatum HOM05D005518 ORTHO05D001269 4.4e-54 216.1 364 46.4
FvH4_5g07650 Fragaria vesca HOM05D005518 ORTHO05D001269 4.4e-54 216.1 366 45.9
FAN18G1514 Fragaria x ananassa HOM05D000557 ORTHO05D001269 5.8e-54 215.7 348 48.3
Duzib205G1346 Durio zibethinus HOM05D005518 ORTHO05D001269 1.3e-53 214.5 360 46.4
Nn1g07622 Nelumbo nucifera HOM05D005518 ORTHO05D001269 3.8e-53 213.0 364 46.4
Manes.06G116500 Manihot esculenta HOM05D005518 ORTHO05D001269 8.4e-53 211.8 363 43.8
Gohir.A11G035500 Gossypium hirsutum HOM05D005518 ORTHO05D001269 2.4e-52 210.3 346 49.7
Lsat_1_v5_gn_1_29580 Lactuca sativa HOM05D005518 ORTHO05D001269 5.4e-52 209.1 390 43.6
Lj5C99T12 Lonicera japonica HOM05D005518 ORTHO05D001269 5.4e-52 209.1 345 47.8
Potri.012G094200 Populus trichocarpa HOM05D005518 ORTHO05D001269 9.3e-52 208.4 353 46.5
Gohir.D11G039100 Gossypium hirsutum HOM05D005518 ORTHO05D001269 1.2e-51 208.0 350 47.4
MSTRG.22916 Avicennia marina HOM05D005518 ORTHO05D001269 1.6e-51 207.6 363 46.0
COL.COLO4_16831 Corchorus olitorius HOM05D005518 ORTHO05D001269 2.1e-51 207.2 360 46.9
Actinidia25603 Actinidia chinensis HOM05D005518 ORTHO05D001269 7.8e-51 205.3 321 48.9
Actinidia08857 Actinidia chinensis HOM05D005518 ORTHO05D001269 1.0e-50 204.9 282 53.9
Gorai.007G042000 Gossypium raimondii HOM05D005518 ORTHO05D001269 3.0e-50 203.4 340 48.8
Migut.D01234 Erythranthe guttata HOM05D005518 ORTHO05D001269 8.7e-50 201.8 367 45.8
PGSC0003DMG400015252 Solanum tuberosum HOM05D005518 ORTHO05D001269 1.1e-49 201.4 349 47.3
Potri.015G091500 Populus trichocarpa HOM05D005518 ORTHO05D001269 1.5e-49 201.1 366 45.9
Nitab4.5_0005327g0060 Nicotiana tabacum HOM05D005518 ORTHO05D001269 4.3e-49 199.5 346 45.4
Sabra15G0113400 Salix brachista HOM05D005518 ORTHO05D001269 4.3e-49 199.5 378 44.4
MSTRG.9316 Avicennia marina HOM05D005518 ORTHO05D001269 5.6e-49 199.1 350 45.1
SGA_v2.0_scaffold37G14614 Striga asiatica HOM05D005518 ORTHO05D001269 3.6e-48 196.4 366 46.2
MBI14_g12740_MAGBIO Magnolia biondii HOM05D005518 ORTHO05D001269 6.9e-47 192.2 393 42.7
ClCG03G003580 Citrullus lanatus HOM05D005518 ORTHO05D001269 9.0e-47 191.8 352 46.3
Ciclev10019441m.g Citrus clementina HOM05D005518 ORTHO05D001269 3.4e-46 189.9 363 43.5
CsaV3_1G009430 Cucumis sativus L. HOM05D005518 ORTHO05D001269 3.4e-46 189.9 352 46.6
MELO3C002344.2 Cucumis melo HOM05D005518 ORTHO05D001269 7.6e-46 188.7 352 46.0
PSO782G5170 Papaver somniferum HOM05D005518 ORTHO05D001269 1.7e-45 187.6 381 43.0
DCAR_007472 Daucus carota HOM05D005518 ORTHO05D001269 1.9e-44 184.1 345 41.4
Sopen03g030200 Solanum pennellii HOM05D005518 ORTHO05D001269 9.3e-44 181.8 348 45.1
Sed0017473 Sechium edule HOM05D005518 ORTHO05D001269 2.1e-43 180.6 348 44.8
Nitab4.5_0001664g0120 Nicotiana tabacum HOM05D005518 ORTHO05D001269 4.6e-43 179.5 348 44.5
Solyc03g111030.3 Solanum lycopersicum HOM05D005518 ORTHO05D001269 4.6e-43 179.5 348 44.8
TWI23G0187 Tripterygium wilfordii HOM05D005518 ORTHO05D001269 7.9e-43 178.7 394 41.9
HanXRQChr02g0035181 Helianthus annuus HOM05D005518 ORTHO05D001269 1.3e-42 177.9 370 39.2
Sed0015656 Sechium edule HOM05D005518 ORTHO05D001269 3.9e-42 176.4 350 43.1
Glyma.06G172500 Glycine max HOM05D005518 ORTHO05D001269 2.5e-41 173.7 359 44.3
Lalb_Chr08g0237001 Lupinus albus HOM05D005518 ORTHO05D001269 2.5e-41 173.7 350 42.9
HanXRQChr04g0100301 Helianthus annuus HOM05D005518 ORTHO05D001269 3.3e-41 173.3 459 36.2
Peaxi162Scf00089g00324 Petunia axillaris HOM05D005518 ORTHO05D001269 1.3e-40 171.4 359 40.7
Lj1g0006481 Lotus japonicus HOM05D005518 ORTHO05D001269 2.1e-40 170.6 356 42.4
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 2.4e-39 167.2 317 43.5
Oeu055998.1 Olea europaea HOM05D005518 ORTHO05D001269 9.0e-39 165.2 361 42.4
TPR.G26139 Trifolium pratense HOM05D005518 ORTHO05D001269 2.0e-38 164.1 353 42.2
Duzib084G0018 Durio zibethinus HOM05D005518 ORTHO05D001269 7.6e-38 162.2 481 36.0
ECA247G0960 Erigeron canadensis HOM05D005518 ORTHO05D001269 7.6e-38 162.2 434 35.3
Lalb_Chr11g0069691 Lupinus albus HOM05D005518 ORTHO05D001269 7.6e-38 162.2 355 42.8
ATR0751G048 Amborella trichopoda HOM05D005518 ORTHO05D001269 9.9e-38 161.8 403 37.5
Aqoxy4G02270 Aquilegia oxysepala HOM05D005518 ORTHO05D001269 1.4e-36 157.9 360 40.6
Medtr3g075070 Medicago truncatula HOM05D005518 ORTHO05D001269 1.9e-36 157.5 351 41.9
CDE06G2288 Ceratophyllum demersum HOM05D005518 ORTHO05D005913 2.1e-35 154.1 348 40.5
PSO063G3591 Papaver somniferum HOM05D005518 ORTHO05D001269 1.3e-34 151.4 342 39.5
Psat5g139920 Pisum sativum HOM05D005518 ORTHO05D001269 1.3e-34 151.4 352 40.6
Cc04_g10180 Coffea canephora HOM05D005518 ORTHO05D001269 1.9e-33 147.5 404 37.1
Duzib068G1391 Durio zibethinus HOM05D005518 ORTHO05D001269 1.9e-33 147.5 261 48.7
Glyma.04G193600 Glycine max HOM05D005518 ORTHO05D001269 2.1e-32 144.1 308 45.5
EL10As4g23466 Beta vulgaris HOM05D005518 ORTHO05D001269 1.2e-30 138.3 348 37.1
Manes.14G054500 Manihot esculenta HOM05D005518 ORTHO05D001269 2.6e-30 137.1 360 38.3
Phvul.009G168300 Phaseolus vulgaris HOM05D005518 ORTHO05D001269 5.8e-30 136.0 358 40.5
AUR62025869 Chenopodium quinoa HOM05D005518 ORTHO05D001269 5.5e-28 129.4 350 36.3
AUR62029840 Chenopodium quinoa HOM05D005518 ORTHO05D001269 6.7e-26 122.5 360 35.3
MD06G1148700 Malus domestica HOM05D005518 ORTHO05D001269 1.6e-24 117.9 273 44.0
HPP92_027039 Vanilla planifolia HOM05D005518 ORTHO05D001269 8.2e-24 115.5 328 36.0
Hund02416 Selenicereus undatus HOM05D005518 ORTHO05D001269 1.4e-23 114.8 341 33.7
CDE03G0480 Ceratophyllum demersum HOM05D005518 ORTHO05D001269 2.0e-22 110.9 349 37.8
Sc04g0000850 Simmondsia chinensis HOM05D005518 ORTHO05D001269 1.9e-20 104.4 334 35.6
Oeu023474.2 Olea europaea HOM05D005518 ORTHO05D001269 3.2e-20 103.6 355 34.6
AT5G50350 Arabidopsis thaliana HOM05D005518 ORTHO05D001269 9.4e-20 102.1 407 31.9
arahy.Tifrunner.gnm1.ann1.QFFJ7D Arachis hypogaea HOM05D005518 ORTHO05D001269 2.7e-19 100.5 379 33.8
AL8G24460 Arabidopsis lyrata HOM05D005518 ORTHO05D001269 6.1e-19 99.4 403 31.5
THA.LOC104825006 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 2.3e-18 97.4 383 33.9
unitig_22.g5764 Utricularia gibba HOM05D005518 ORTHO05D001269 5.1e-18 96.3 292 37.3
VMungo1309G2768 Vigna mungo HOM05D005518 ORTHO05D001269 6.7e-18 95.9 357 34.7
Sc22g0004150 Simmondsia chinensis HOM05D005518 ORTHO05D001269 8.8e-18 95.5 152 41.4
SalBow1G4741 Salvia bowleyana HOM05D005518 ORTHO05D001269 1.5e-17 94.7 192 39.6
arahy.Tifrunner.gnm1.ann1.P5I184 Arachis hypogaea HOM05D001134 ORTHO05D001269 5.7e-17 92.8 342 34.2
CARHR258130 Cardamine hirsuta HOM05D005518 ORTHO05D001269 6.3e-16 89.4 400 29.2
Oeu006376.1 Olea europaea HOM05D005518 ORTHO05D001269 8.2e-16 89.0 121 47.1
Ca_16087_v3 Cicer arietinum L. HOM05D005518 ORTHO05D001269 1.1e-15 88.6 171 48.5
SEGI_40207 Sequoiadendron giganteum HOM05D005518 ORTHO05D001269 4.1e-15 86.7 349 31.2
Zm00001eb388520 Zea mays HOM05D005518 ORTHO05D001269 2.0e-14 84.3 369 30.1
Thhalv10013029m.g Eutrema salsugineum HOM05D005518 ORTHO05D001269 4.5e-14 83.2 421 30.4
A03p27800 Brassica napus HOM05D005518 ORTHO05D001269 5.0e-13 79.7 404 28.0
Os06g0609800 Oryza sativa ssp. japonica HOM05D005518 ORTHO05D001269 5.0e-13 79.7 320 30.9
Aa31LG3G5820 Aethionema arabicum HOM05D005518 ORTHO05D001269 6.5e-13 79.3 399 29.8
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 6.5e-13 79.3 401 28.2
TAR555G0002 Trochodendron aralioides HOM05D007286 ORTHO05D008955 1.4e-12 78.2 362 29.6
Carub.0008s1043 Capsella rubella HOM05D005518 ORTHO05D001269 1.9e-12 77.8 442 25.6
Migut.I00490 Erythranthe guttata HOM05D005518 ORTHO05D001269 1.9e-12 77.8 345 33.3
Sp6g12480 Schrenkiella parvula HOM05D005518 ORTHO05D001269 2.5e-12 77.4 417 28.5
MBI19_g06405_MAGBIO Magnolia biondii HOM05D007286 ORTHO05D008955 5.5e-12 76.3 366 30.3
ATR0307G001 Amborella trichopoda HOM05D007286 ORTHO05D008955 7.2e-12 75.9 374 31.3
THA.LOC104803143 Tarenaya hassleriana HOM05D005518 ORTHO05D001269 2.3e-10 70.9 403 29.0
Nn7g37274 Nelumbo nucifera HOM05D007286 ORTHO05D008955 8.8e-10 68.9 363 28.7
BraA03t11991Z Brassica rapa HOM05D005518 ORTHO05D001269 2.6e-09 67.4 404 26.2
C03p33530 Brassica napus HOM05D005518 ORTHO05D001269 5.7e-09 66.2 410 26.8
BolC3t15674H Brassica oleracea HOM05D005518 ORTHO05D001269 5.7e-09 66.2 410 26.8
CANSAT56G4194 Cannabis sativa HOM05D007286 ORTHO05D008955 9.7e-09 65.5 239 33.5
BcaC01g04812 Brassica carinata HOM05D005518 ORTHO05D001269 1.7e-08 64.7 410 26.8
CANSAT56G1680 Cannabis sativa HOM05D007286 ORTHO05D008955 1.7e-08 64.7 239 33.5
Ciclev10000662m.g Citrus clementina HOM05D007286 ORTHO05D008955 1.8e-07 61.2 350 28.6
FvH4_7g05350 Fragaria vesca HOM05D007286 ORTHO05D008955 3.1e-07 60.5 251 29.9
GSVIVG01027344001 Vitis vinifera HOM05D007286 ORTHO05D008955 5.3e-07 59.7 348 29.6


User provided reference genes

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