Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0015532 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 4.5e-84 314.7 176 100.0
CSS0031699 Camellia sinensis var. sinensis HOM05D006115 ORTHO05D007528 4.5e-84 314.7 176 100.0
Rhsim06G0148500 Rhododendron simsii HOM05D006115 ORTHO05D007528 4.3e-58 228.4 171 73.1
Sopen07g028230 Solanum pennellii HOM05D006115 ORTHO05D007528 1.2e-57 226.9 176 70.5
PGSC0003DMG400018360 Solanum tuberosum HOM05D006115 ORTHO05D007528 1.2e-57 226.9 176 70.5
Nn1g03988 Nelumbo nucifera HOM05D006115 ORTHO05D007528 2.1e-57 226.1 178 70.8
Duzib132G1267 Durio zibethinus HOM05D006115 ORTHO05D007528 3.6e-57 225.3 180 73.9
Solyc07g054290.1 Solanum lycopersicum HOM05D006115 ORTHO05D007528 3.6e-57 225.3 176 70.5
Aqoxy4G01223 Aquilegia oxysepala HOM05D006115 ORTHO05D007528 8.0e-57 224.2 177 73.4
Cfa014568 Carpinus fangiana HOM05D006115 ORTHO05D007528 1.0e-56 223.8 176 74.4
GSVIVG01030552001 Vitis vinifera HOM05D006115 ORTHO05D007528 5.2e-56 221.5 177 75.7
Haze_13113 Corylus avellana HOM05D006115 ORTHO05D007528 8.9e-56 220.7 176 74.4
DCAR_019192 Daucus carota HOM05D006115 ORTHO05D007528 8.9e-56 220.7 176 69.9
Peaxi162Scf00610g00313 Petunia axillaris HOM05D006115 ORTHO05D007528 8.9e-56 220.7 176 68.8
COL.COLO4_35403 Corchorus olitorius HOM05D006115 ORTHO05D007528 1.2e-55 220.3 178 70.2
Nitab4.5_0005380g0050 Nicotiana tabacum HOM05D006115 ORTHO05D007528 1.5e-55 219.9 178 69.1
Eucgr.K00947 Eucalyptus grandis HOM05D006115 ORTHO05D007528 9.8e-55 217.2 180 70.0
Potri.005G206200 Populus trichocarpa HOM05D006115 ORTHO05D007528 9.8e-55 217.2 182 69.8
Hma1.2p1_0875F.1_g231400 Hydrangea macrophylla HOM05D006115 ORTHO05D007528 1.3e-54 216.9 179 71.5
Medtr2g090200 Medicago truncatula HOM05D006115 ORTHO05D007528 1.3e-54 216.9 176 69.9
Nitab4.5_0001090g0130 Nicotiana tabacum HOM05D006115 ORTHO05D007528 1.3e-54 216.9 176 68.8
CiPaw.04G123900 Carya illinoinensis HOM05D006115 ORTHO05D007528 1.7e-54 216.5 177 71.2
Oeu029929.1 Olea europaea HOM05D006115 ORTHO05D007528 2.9e-54 215.7 176 68.8
Peaxi162Scf00132g00062 Petunia axillaris HOM05D006115 ORTHO05D007528 3.7e-54 215.3 176 67.6
CANSAT64G2665 Cannabis sativa HOM05D006115 ORTHO05D007528 4.9e-54 214.9 183 66.1
Cc05_g06750 Coffea canephora HOM05D006115 ORTHO05D007528 4.9e-54 214.9 180 68.3
Lalb_Chr24g0399841 Lupinus albus HOM05D006115 ORTHO05D007528 6.4e-54 214.5 180 68.3
CsaV3_7G004300 Cucumis sativus L. HOM05D006115 ORTHO05D007528 8.3e-54 214.2 176 68.2
PGR142G3842 Punica granatum HOM05D006115 ORTHO05D007528 1.1e-53 213.8 186 67.2
QL08p037826 Quercus lobata HOM05D006115 ORTHO05D007528 1.1e-53 213.8 180 72.8
MELO3C018748.2 Cucumis melo HOM05D006115 ORTHO05D007528 1.8e-53 213.0 176 67.6
Psat7g036720 Pisum sativum HOM05D006115 ORTHO05D007528 1.8e-53 213.0 176 68.8
Lj3g0001000 Lotus japonicus HOM05D006115 ORTHO05D007528 3.2e-53 212.2 177 68.4
Sabra05G0156800 Salix brachista HOM05D006115 ORTHO05D007528 3.2e-53 212.2 177 67.2
Thecc.02G175700 Theobroma cacao HOM05D006115 ORTHO05D007528 3.2e-53 212.2 176 69.9
Ciclev10016927m.g Citrus clementina HOM05D006115 ORTHO05D007528 4.1e-53 211.8 176 66.5
MD17G1079700 Malus domestica HOM05D006115 ORTHO05D007528 4.1e-53 211.8 181 68.5
ClCG02G001140 Citrullus lanatus HOM05D006115 ORTHO05D007528 5.4e-53 211.5 176 68.2
Manes.08G098700 Manihot esculenta HOM05D006115 ORTHO05D007528 5.4e-53 211.5 176 70.5
Oeu040003.1 Olea europaea HOM05D006115 ORTHO05D007528 5.4e-53 211.5 176 69.3
Potri.002G056300 Populus trichocarpa HOM05D006115 ORTHO05D007528 5.4e-53 211.5 186 65.1
MBI02_g19258_MAGBIO Magnolia biondii HOM05D006115 ORTHO05D007528 7.0e-53 211.1 177 67.2
FvH4_6g45050 Fragaria vesca HOM05D006115 ORTHO05D007528 9.2e-53 210.7 177 66.7
FAN14G2522 Fragaria x ananassa HOM05D006115 ORTHO05D007528 9.2e-53 210.7 177 66.7
Phvul.005G105900 Phaseolus vulgaris HOM05D006115 ORTHO05D007528 1.6e-52 209.9 176 66.5
Sed0024793 Sechium edule HOM05D006115 ORTHO05D007528 1.6e-52 209.9 176 65.9
FAN02G4183 Fragaria x ananassa HOM05D006115 ORTHO05D007528 2.0e-52 209.5 177 68.4
FAN09G2594 Fragaria x ananassa HOM05D006115 ORTHO05D007528 2.0e-52 209.5 177 68.4
MD09G1090500 Malus domestica HOM05D006115 ORTHO05D007528 2.7e-52 209.1 181 66.9
Lalb_Chr14g0366761 Lupinus albus HOM05D006115 ORTHO05D007528 4.6e-52 208.4 176 66.5
Gohir.A12G137300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 5.9e-52 208.0 186 66.7
Dinv03833 Davidia involucrata HOM05D006115 ORTHO05D007528 7.8e-52 207.6 169 71.6
Sabra02G0045600 Salix brachista HOM05D006115 ORTHO05D007528 7.8e-52 207.6 181 67.4
TWI75G0783 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 7.8e-52 207.6 176 68.2
RcHm_v2.0_Chr2g0162381 Rosa chinensis HOM05D006115 ORTHO05D007528 1.0e-51 207.2 177 65.0
Gohir.D01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 1.3e-51 206.8 189 66.1
TPR.G35547 Trifolium pratense HOM05D006115 ORTHO05D007528 1.7e-51 206.5 176 68.8
MSTRG.12305 Avicennia marina HOM05D006115 ORTHO05D007528 2.3e-51 206.1 178 66.9
MSTRG.14200 Avicennia marina HOM05D006115 ORTHO05D007528 2.3e-51 206.1 181 67.4
Glyma.12G202500 Glycine max HOM05D006115 ORTHO05D007528 2.3e-51 206.1 178 70.2
Duzib248G0317 Durio zibethinus HOM05D006115 ORTHO05D007528 3.0e-51 205.7 176 67.0
Gohir.A01G015900 Gossypium hirsutum HOM05D006115 ORTHO05D007528 3.9e-51 205.3 178 67.4
HanXRQChr17g0542591 Helianthus annuus HOM05D006115 ORTHO05D007528 3.9e-51 205.3 176 66.5
Lsat_1_v5_gn_3_39480 Lactuca sativa HOM05D006115 ORTHO05D007528 3.9e-51 205.3 176 69.3
Gorai.002G017600 Gossypium raimondii HOM05D006115 ORTHO05D007528 6.6e-51 204.5 189 65.6
Prupe.3G235100 Prunus persica HOM05D006115 ORTHO05D007528 6.6e-51 204.5 180 66.1
PSO832G3416 Papaver somniferum HOM05D006115 ORTHO05D007528 8.6e-51 204.1 182 64.8
PSO210G0967 Papaver somniferum HOM05D006115 ORTHO05D007528 1.9e-50 203.0 184 63.6
TWI18G1016 Tripterygium wilfordii HOM05D006115 ORTHO05D007528 1.9e-50 203.0 177 71.2
Atru.chr6.3034 Acer truncatum HOM05D006115 ORTHO05D007528 3.3e-50 202.2 183 69.9
FAN05G1351 Fragaria x ananassa HOM05D006115 ORTHO05D007528 7.3e-50 201.1 174 69.0
Sed0009578 Sechium edule HOM05D006115 ORTHO05D007528 7.3e-50 201.1 175 62.9
VMungo1080G1219 Vigna mungo HOM05D006115 ORTHO05D007528 9.5e-50 200.7 176 68.2
Gorai.008G152600 Gossypium raimondii HOM05D006115 ORTHO05D007528 1.2e-49 200.3 177 68.4
AUR62041946 Chenopodium quinoa HOM05D006115 ORTHO05D007528 1.6e-49 199.9 182 64.8
AUR62028441 Chenopodium quinoa HOM05D006115 ORTHO05D007528 2.1e-49 199.5 182 64.8
Gohir.D12G141300 Gossypium hirsutum HOM05D006115 ORTHO05D007528 4.7e-49 198.4 177 67.8
Migut.H01055 Erythranthe guttata HOM05D006115 ORTHO05D007528 5.2e-48 194.9 182 67.0
Ah.08g220260 Amaranthus hybridus HOM05D006115 ORTHO05D007528 8.9e-48 194.1 179 62.0
Lj8P115T48 Lonicera japonica HOM05D006115 ORTHO05D007528 2.0e-47 193.0 115 85.2
unitig_749.g13954 Utricularia gibba HOM05D006115 ORTHO05D007528 2.0e-47 193.0 180 60.6
Lj1P733T48 Lonicera japonica HOM05D006115 ORTHO05D007528 3.4e-47 192.2 130 77.7
SGA_v2.0_scaffold356G49787 Striga asiatica HOM05D006115 ORTHO05D007528 3.4e-47 192.2 171 64.3
Aa31LG1G20930 Aethionema arabicum HOM05D006115 ORTHO05D007528 4.4e-47 191.8 184 62.0
Glyma.13G299200 Glycine max HOM05D006115 ORTHO05D007528 4.4e-47 191.8 176 67.0
Actinidia09875 Actinidia chinensis HOM05D006115 ORTHO05D007528 1.3e-46 190.3 130 79.2
THA.LOC104827374 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 1.7e-46 189.9 137 73.0
unitig_26.g9943 Utricularia gibba HOM05D006115 ORTHO05D007528 2.2e-46 189.5 180 60.6
HPP92_017628 Vanilla planifolia HOM05D006115 ORTHO05D007528 2.2e-46 189.5 132 76.5
BcaB02g06915 Brassica carinata HOM05D006115 ORTHO05D007528 2.9e-46 189.1 174 62.6
CDE05G3372 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 2.9e-46 189.1 181 59.1
A10p02120 Brassica napus HOM05D006115 ORTHO05D007528 4.9e-46 188.3 170 62.4
AL1G13100 Arabidopsis lyrata HOM05D006115 ORTHO05D007528 8.3e-46 187.6 169 63.9
Sp1g02510 Schrenkiella parvula HOM05D006115 ORTHO05D007528 1.1e-45 187.2 137 71.5
BcaC05g24519 Brassica carinata HOM05D006115 ORTHO05D007528 1.4e-45 186.8 170 62.4
C05p02030 Brassica napus HOM05D006115 ORTHO05D007528 1.4e-45 186.8 170 62.4
BolC5t28981H Brassica oleracea HOM05D006115 ORTHO05D007528 1.9e-45 186.4 170 62.4
Carub.0001s0272 Capsella rubella HOM05D006115 ORTHO05D007528 1.9e-45 186.4 136 73.5
Thhalv10008901m.g Eutrema salsugineum HOM05D006115 ORTHO05D007528 2.4e-45 186.0 171 64.9
AT1G03600 Arabidopsis thaliana HOM05D006115 ORTHO05D007528 3.2e-45 185.7 136 72.1
BolC8t46868H Brassica oleracea HOM05D006115 ORTHO05D007528 3.2e-45 185.7 137 70.8
Zm00001eb015950 Zea mays HOM05D006115 ORTHO05D007528 4.1e-45 185.3 133 72.9
THA.LOC104801178 Tarenaya hassleriana HOM05D006115 ORTHO05D007528 9.2e-45 184.1 107 85.0
Duzib052G1052 Durio zibethinus HOM05D006115 ORTHO05D007528 1.6e-44 183.3 175 62.3
ECA246G1074 Erigeron canadensis HOM05D006115 ORTHO05D007528 2.7e-44 182.6 176 59.7
BcaC07g36953 Brassica carinata HOM05D006115 ORTHO05D007528 3.5e-44 182.2 175 60.6
A08p37300 Brassica napus HOM05D006115 ORTHO05D007528 3.5e-44 182.2 175 61.7
C08p00700 Brassica napus HOM05D006115 ORTHO05D007528 3.5e-44 182.2 175 60.6
CARHR002940 Cardamine hirsuta HOM05D006115 ORTHO05D007528 6.0e-44 181.4 136 70.6
BraA08t35627Z Brassica rapa HOM05D006115 ORTHO05D007528 1.0e-43 180.6 176 60.2
Os03g0333400 Oryza sativa ssp. japonica HOM05D006115 ORTHO05D007528 1.3e-43 180.3 110 82.7
Zm00001eb395230 Zea mays HOM05D006115 ORTHO05D007528 1.7e-43 179.9 121 77.7
Sc12g0002830 Simmondsia chinensis HOM05D006115 ORTHO05D007528 5.0e-43 178.3 103 87.4
BraA10t42481Z Brassica rapa HOM05D006115 ORTHO05D007528 1.5e-42 176.8 170 60.0
SEGI_04908 Sequoiadendron giganteum HOM05D006115 ORTHO05D007528 3.2e-37 159.1 110 71.8
Actinidia11067 Actinidia chinensis HOM05D006115 ORTHO05D007528 3.3e-34 149.1 141 65.2
Pp3c9_26020 Physcomitrium patens HOM05D006115 ORTHO05D007528 8.1e-33 144.4 137 54.7
Ca_01513_v3 Cicer arietinum L. HOM05D006115 ORTHO05D007528 1.1e-32 144.1 85 81.2
SMO364G0930 Selaginella moellendorffii HOM05D006115 ORTHO05D007528 1.5e-31 140.2 140 53.6
CDE05G0569 Ceratophyllum demersum HOM05D006115 ORTHO05D007528 9.9e-31 137.5 144 54.9
Mapoly0049s0056 Marchantia polymorpha HOM05D006115 ORTHO05D007528 5.4e-29 131.7 133 50.4
AagrBONN_evm.TU.Sc2ySwM_228.954 Anthoceros agrestis HOM05D006115 ORTHO05D007528 1.2e-28 130.6 104 58.7
TAR627G0228 Trochodendron aralioides HOM05D006115 ORTHO05D007528 2.3e-27 126.3 131 61.1
CBR_g50764 Chara braunii HOM05D006115 ORTHO05D007528 3.0e-27 125.9 117 55.6
MCO14G469 Micromonas commoda HOM05D006115 ORTHO05D007528 1.3e-22 110.5 105 49.5
Cre05.g243800 Chlamydomonas reinhardtii HOM05D006115 ORTHO05D007528 1.6e-20 103.6 104 49.0
Dinv23684 Davidia involucrata HOM05D006115 ORTHO05D007528 2.7e-20 102.8 170 50.0
ATR0693G305 Amborella trichopoda HOM05D006115 ORTHO05D007528 1.3e-17 94.0 144 47.9
Ciclev10005922m.g Citrus clementina HOM05D007072 ORTHO05D008841 2.0e-07 60.1 98 29.6
FvH4_4g15520 Fragaria vesca HOM05D007072 ORTHO05D008841 1.3e-06 57.4 98 29.6
FAN12G0870 Fragaria x ananassa HOM05D007072 ORTHO05D008841 1.3e-06 57.4 98 29.6
FAN22G0737 Fragaria x ananassa HOM05D007072 ORTHO05D008841 1.3e-06 57.4 99 29.3
Gohir.D10G174900 Gossypium hirsutum HOM05D007072 ORTHO05D008841 1.3e-06 57.4 98 29.6
Gorai.011G195700 Gossypium raimondii HOM05D007072 ORTHO05D008841 1.3e-06 57.4 98 30.6
FAN07G0953 Fragaria x ananassa HOM05D007072 ORTHO05D008841 1.7e-06 57.0 98 29.6
MD16G1193700 Malus domestica HOM05D007072 ORTHO05D008841 1.7e-06 57.0 98 29.6
Gohir.A10G168700 Gossypium hirsutum HOM05D007072 ORTHO05D008841 2.9e-06 56.2 98 29.6
A10p04090 Brassica napus HOM05D007072 ORTHO05D008841 3.8e-06 55.8 98 27.6
BolC5t29149H Brassica oleracea HOM05D007072 ORTHO05D008841 3.8e-06 55.8 98 27.6
BraA10t42680Z Brassica rapa HOM05D007072 ORTHO05D008841 3.8e-06 55.8 98 27.6
Carub.0001s0473 Capsella rubella HOM05D007072 ORTHO05D008841 6.4e-06 55.1 98 27.6
Prupe.1G013400 Prunus persica HOM05D007072 ORTHO05D008841 6.4e-06 55.1 98 28.6


User provided reference genes

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