Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031688 Camellia sinensis var. sinensis HOM05D008409 ORTHO05D010483 2.0e-74 282.3 141 100.0
QL08p038864 Quercus lobata HOM05D008409 ORTHO05D010483 2.3e-54 215.7 142 76.8
Haze_13167 Corylus avellana HOM05D008409 ORTHO05D010483 2.5e-53 212.2 142 74.6
Thecc.02G180200 Theobroma cacao HOM05D008409 ORTHO05D010483 2.5e-53 212.2 142 76.1
Actinidia11031 Actinidia chinensis HOM05D008409 ORTHO05D010483 4.3e-53 211.5 142 75.4
Potri.013G131000 Populus trichocarpa HOM05D008409 ORTHO05D010483 4.3e-53 211.5 142 76.1
GSVIVG01020550001 Vitis vinifera HOM05D008409 ORTHO05D010483 7.4e-53 210.7 142 75.4
CiPaw.04G126300 Carya illinoinensis HOM05D008409 ORTHO05D010483 9.6e-53 210.3 142 74.6
TAR627G0101 Trochodendron aralioides HOM05D008409 ORTHO05D010483 1.8e-51 206.1 139 75.5
Nn1g06548 Nelumbo nucifera HOM05D008409 ORTHO05D010483 9.0e-51 203.8 142 71.1
Atru.chr6.2992 Acer truncatum HOM05D008409 ORTHO05D010483 2.6e-50 202.2 142 73.2
Manes.12G089218 Manihot esculenta HOM05D008409 ORTHO05D010483 5.8e-50 201.1 142 71.1
PGR142G1945 Punica granatum HOM05D008409 ORTHO05D010483 1.3e-49 199.9 142 70.4
Sabra13G0110600 Salix brachista HOM05D008409 ORTHO05D010483 1.3e-49 199.9 142 71.1
CsaV3_7G004460 Cucumis sativus L. HOM05D008409 ORTHO05D010483 6.4e-49 197.6 142 68.3
MELO3C018733.2 Cucumis melo HOM05D008409 ORTHO05D010483 1.4e-48 196.4 142 67.6
ClCG07G002880 Citrullus lanatus HOM05D008409 ORTHO05D010483 1.9e-48 196.1 142 68.3
Ciclev10017070m.g Citrus clementina HOM05D008409 ORTHO05D010483 4.2e-48 194.9 142 71.1
Sed0018099 Sechium edule HOM05D008409 ORTHO05D010483 2.1e-47 192.6 142 66.2
Gohir.A04G103600 Gossypium hirsutum HOM05D008409 ORTHO05D010483 4.6e-47 191.4 143 67.8
Gorai.012G128600 Gossypium raimondii HOM05D008409 ORTHO05D010483 6.0e-47 191.0 143 67.8
TWI36G0630 Tripterygium wilfordii HOM05D008409 ORTHO05D010483 3.0e-46 188.7 141 65.2
COL.COLO4_30195 Corchorus olitorius HOM05D008409 ORTHO05D010483 1.9e-45 186.0 126 71.4
Gohir.D04G143000 Gossypium hirsutum HOM05D008409 ORTHO05D010483 2.5e-45 185.7 143 66.4
Aqoxy1G02429 Aquilegia oxysepala HOM05D008409 ORTHO05D010483 2.1e-44 182.6 142 64.1
MD09G1247200 Malus domestica HOM05D008409 ORTHO05D010483 2.1e-44 182.6 143 65.7
CAN.G578.4 Capsicum annuum HOM05D008409 ORTHO05D010483 1.1e-43 180.3 142 65.5
Peaxi162Scf00059g01918 Petunia axillaris HOM05D008409 ORTHO05D010483 4.0e-43 178.3 142 62.7
PSO675G8696 Papaver somniferum HOM05D008409 ORTHO05D010483 5.8e-42 174.5 142 62.0
PSO541G0816 Papaver somniferum HOM05D008409 ORTHO05D010483 6.5e-41 171.0 142 60.6
Os08g0374000 Oryza sativa ssp. japonica HOM05D008409 ORTHO05D010483 8.4e-41 170.6 143 57.3
PGSC0003DMG400013143 Solanum tuberosum HOM05D008409 ORTHO05D010483 1.4e-40 169.9 143 60.1
MBI06_g04179_MAGBIO Magnolia biondii HOM05D008409 ORTHO05D010483 7.1e-40 167.5 142 62.7
Solyc10g008330.4 Solanum lycopersicum HOM05D008409 ORTHO05D010483 1.6e-39 166.4 142 61.3
ATR0737G133 Amborella trichopoda HOM05D008409 ORTHO05D010483 6.0e-39 164.5 142 57.0
Sopen10g004190 Solanum pennellii HOM05D008409 ORTHO05D010483 2.3e-38 162.5 143 59.4
vmacro12306 Vaccinium macrocarpon HOM05D008409 ORTHO05D010483 4.8e-36 154.8 109 71.6
Nitab4.5_0009473g0020 Nicotiana tabacum HOM05D008409 ORTHO05D010483 6.5e-33 144.4 143 56.6
Dinv23634 Davidia involucrata HOM05D008409 ORTHO05D010483 3.6e-31 138.7 110 62.7
SEGI_00232 Sequoiadendron giganteum HOM05D008409 ORTHO05D010483 3.3e-29 132.1 147 45.6
QL08p038938 Quercus lobata HOM05D008409 ORTHO05D010483 1.6e-28 129.8 86 73.3
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 1.1e-11 73.9 133 33.8
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 1.6e-07 60.1 135 34.8
Pp3c1_10460 Physcomitrium patens HOM05D012277 ORTHO05D010483 3.0e-06 55.8 138 28.3
CsaV3_5G031770 Cucumis sativus L. HOM05D000197 ORTHO05D000114 5.2e-06 55.1 120 37.5


User provided reference genes

Program Settings