Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031669 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D004895 7.7e-52 206.8 102 100.0
Actinidia26040 Actinidia chinensis HOM05D001920 ORTHO05D004895 6.5e-27 124.0 89 68.5
vmacro17039 Vaccinium macrocarpon HOM05D001920 ORTHO05D004895 1.5e-26 122.9 92 66.3
vmacro20642 Vaccinium macrocarpon HOM05D001920 ORTHO05D004895 3.3e-26 121.7 88 68.2
Dinv04004 Davidia involucrata HOM05D001920 ORTHO05D004895 4.0e-24 114.8 89 61.8
Dinv30362 Davidia involucrata HOM05D001920 ORTHO05D004895 8.9e-24 113.6 89 61.8
Rhsim12G0208300 Rhododendron simsii HOM05D001920 ORTHO05D004895 9.8e-23 110.2 89 62.9
Hma1.2p1_0496F.1_g166080 Hydrangea macrophylla HOM05D001920 ORTHO05D004895 3.7e-22 108.2 89 59.6
Nitab4.5_0005003g0070 Nicotiana tabacum HOM05D001920 ORTHO05D004895 1.4e-21 106.3 92 57.6
Migut.I01051 Erythranthe guttata HOM05D001920 ORTHO05D004895 5.4e-21 104.4 89 58.4
Nitab4.5_0009641g0080 Nicotiana tabacum HOM05D001920 ORTHO05D004895 7.0e-21 104.0 89 56.2
PGR119G1597 Punica granatum HOM05D001920 ORTHO05D004895 7.0e-21 104.0 89 60.7
MBI15_g23252_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D004895 1.2e-20 103.2 92 55.4
Oeu002490.2 Olea europaea HOM05D001920 ORTHO05D004895 1.6e-20 102.8 89 56.2
TAR383G0380 Trochodendron aralioides HOM05D001920 ORTHO05D004895 2.0e-20 102.4 89 59.6
Cc04_g01640 Coffea canephora HOM05D001920 ORTHO05D004895 2.7e-20 102.1 91 57.1
GSVIVG01016814001 Vitis vinifera HOM05D001920 ORTHO05D004895 2.7e-20 102.1 89 59.6
MBI11_g07545_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D004895 3.5e-20 101.7 91 54.9
SGA_v2.0_scaffold71G23819 Striga asiatica HOM05D001920 ORTHO05D004895 7.8e-20 100.5 89 56.2
TWI79G1757 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 7.8e-20 100.5 89 57.3
Solyc03g121870.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 1.0e-19 100.1 89 53.9
Aqoxy6G01567 Aquilegia oxysepala HOM05D001920 ORTHO05D004895 1.3e-19 99.8 89 53.9
CAN.G862.17 Capsicum annuum HOM05D001920 ORTHO05D004895 1.3e-19 99.8 89 53.9
Eucgr.F03163 Eucalyptus grandis HOM05D001920 ORTHO05D004895 1.3e-19 99.8 89 52.8
ATR0716G012 Amborella trichopoda HOM05D001920 ORTHO05D004895 2.3e-19 99.0 89 52.8
HanXRQChr08g0234031 Helianthus annuus HOM05D001920 ORTHO05D004895 2.9e-19 98.6 89 50.6
HanXRQChr10g0309731 Helianthus annuus HOM05D001920 ORTHO05D004895 2.9e-19 98.6 91 52.7
MSTRG.10969 Avicennia marina HOM05D001920 ORTHO05D004895 3.8e-19 98.2 89 51.7
Sopen03g040690 Solanum pennellii HOM05D001920 ORTHO05D004895 3.8e-19 98.2 89 52.8
PGSC0003DMG400002574 Solanum tuberosum HOM05D001920 ORTHO05D004895 3.8e-19 98.2 89 51.7
Nn8g38776 Nelumbo nucifera HOM05D001920 ORTHO05D004895 5.0e-19 97.8 89 52.8
PSO210G7567 Papaver somniferum HOM05D001920 ORTHO05D004895 8.6e-19 97.1 97 49.5
Thecc.06G115800 Theobroma cacao HOM05D001920 ORTHO05D004895 8.6e-19 97.1 89 53.9
Atru.chr1.3803 Acer truncatum HOM05D001920 ORTHO05D004895 1.1e-18 96.7 89 55.1
CANSAT25G1922 Cannabis sativa HOM05D001920 ORTHO05D004895 1.1e-18 96.7 91 50.5
Gohir.D04G008700 Gossypium hirsutum HOM05D001920 ORTHO05D004895 1.1e-18 96.7 89 53.9
Gorai.012G010500 Gossypium raimondii HOM05D001920 ORTHO05D004895 1.1e-18 96.7 89 53.9
vmacro21977 Vaccinium macrocarpon HOM05D001920 ORTHO05D004895 1.1e-18 96.7 90 57.8
Aqoxy7G04000 Aquilegia oxysepala HOM05D001920 ORTHO05D004895 1.5e-18 96.3 92 52.2
ECA247G3878 Erigeron canadensis HOM05D001920 ORTHO05D004895 1.5e-18 96.3 90 53.3
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 1.9e-18 95.9 93 51.6
SalBow4G0898 Salvia bowleyana HOM05D001920 ORTHO05D004895 1.9e-18 95.9 92 52.2
Gohir.A05G406900 Gossypium hirsutum HOM05D001920 ORTHO05D004895 2.5e-18 95.5 89 52.8
Peaxi162Scf00070g00315 Petunia axillaris HOM05D001920 ORTHO05D004895 3.3e-18 95.1 91 53.8
TWI34G1198 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 3.3e-18 95.1 91 53.8
Nitab4.5_0003458g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 4.3e-18 94.7 91 53.8
Nitab4.5_0003730g0040 Nicotiana tabacum HOM05D001920 ORTHO05D004895 4.3e-18 94.7 98 52.0
PSO210G1339 Papaver somniferum HOM05D001920 ORTHO05D004895 4.3e-18 94.7 97 48.5
Solyc08g062770.3 Solanum lycopersicum HOM05D001920 ORTHO05D004895 4.3e-18 94.7 91 53.8
Sopen08g018250 Solanum pennellii HOM05D001920 ORTHO05D004895 4.3e-18 94.7 91 53.8
COL.COLO4_21091 Corchorus olitorius HOM05D001920 ORTHO05D004895 7.3e-18 94.0 97 49.5
PGR044G1960 Punica granatum HOM05D001920 ORTHO05D004895 7.3e-18 94.0 92 50.0
SalBow6G2588 Salvia bowleyana HOM05D001920 ORTHO05D004895 7.3e-18 94.0 89 50.6
ECA234G4475 Erigeron canadensis HOM05D001920 ORTHO05D004895 9.5e-18 93.6 91 49.5
GSVIVG01012560001 Vitis vinifera HOM05D001920 ORTHO05D004895 9.5e-18 93.6 91 49.5
GSVIVG01012573001 Vitis vinifera HOM05D001920 ORTHO05D004895 9.5e-18 93.6 91 49.5
MSTRG.11648 Avicennia marina HOM05D001920 ORTHO05D004895 1.2e-17 93.2 91 51.6
Lj7A259G18 Lonicera japonica HOM05D001920 ORTHO05D004895 1.2e-17 93.2 91 50.5
Zm00001eb003510 Zea mays HOM05D001920 ORTHO05D004895 1.2e-17 93.2 89 48.3
PSO063G2358 Papaver somniferum HOM05D001920 ORTHO05D004895 1.6e-17 92.8 89 49.4
AUR62039141 Chenopodium quinoa HOM05D001920 ORTHO05D004895 2.1e-17 92.4 91 51.6
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.1e-17 92.4 91 50.5
AUR62009117 Chenopodium quinoa HOM05D001920 ORTHO05D004895 2.8e-17 92.0 91 51.6
FvH4_2g31511 Fragaria vesca HOM05D001920 ORTHO05D004895 2.8e-17 92.0 91 50.5
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.8e-17 92.0 91 50.5
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 2.8e-17 92.0 91 48.4
TAR626G1466 Trochodendron aralioides HOM05D001920 ORTHO05D004895 2.8e-17 92.0 91 51.6
CsaV3_4G035790 Cucumis sativus L. HOM05D001920 ORTHO05D004895 4.7e-17 91.3 91 49.5
TWI32G0956 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 4.7e-17 91.3 91 52.7
Duzib168G0495 Durio zibethinus HOM05D001920 ORTHO05D004895 6.1e-17 90.9 91 50.5
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 6.1e-17 90.9 89 49.4
Ah.10g034110 Amaranthus hybridus HOM05D001920 ORTHO05D004895 8.0e-17 90.5 91 49.5
arahy.Tifrunner.gnm1.ann1.ZYB4F6 Arachis hypogaea HOM05D001920 ORTHO05D004895 8.0e-17 90.5 90 50.0
EL10Ac2g03824 Beta vulgaris HOM05D001920 ORTHO05D004895 8.0e-17 90.5 91 49.5
Lalb_Chr24g0399761 Lupinus albus HOM05D001920 ORTHO05D004895 8.0e-17 90.5 88 51.1
PSO832G0401 Papaver somniferum HOM05D001920 ORTHO05D004895 8.0e-17 90.5 89 48.3
Thecc.09G057600 Theobroma cacao HOM05D001920 ORTHO05D004895 8.0e-17 90.5 91 49.5
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.0e-16 90.1 91 49.5
Psat6g021640 Pisum sativum HOM05D001920 ORTHO05D004895 1.0e-16 90.1 89 50.6
COL.COLO4_30718 Corchorus olitorius HOM05D001920 ORTHO05D004895 1.4e-16 89.7 84 54.8
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.4e-16 89.7 91 49.5
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 1.4e-16 89.7 91 49.5
CSS0015201 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D004895 1.8e-16 89.4 91 50.5
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 1.8e-16 89.4 91 47.3
Glyma.14G097800 Glycine max HOM05D001920 ORTHO05D004895 1.8e-16 89.4 89 49.4
Gohir.A06G085800 Gossypium hirsutum HOM05D001920 ORTHO05D004895 1.8e-16 89.4 91 49.5
Hma1.2p1_0196F.1_g084790 Hydrangea macrophylla HOM05D001920 ORTHO05D004895 1.8e-16 89.4 91 50.5
Manes.16G082500 Manihot esculenta HOM05D001920 ORTHO05D004895 1.8e-16 89.4 91 48.4
Pp3c15_20230 Physcomitrium patens HOM05D001920 ORTHO05D004895 1.8e-16 89.4 89 48.3
QL02p000696 Quercus lobata HOM05D001920 ORTHO05D004895 1.8e-16 89.4 91 50.5
RcHm_v2.0_Chr6g0311271 Rosa chinensis HOM05D001920 ORTHO05D004895 1.8e-16 89.4 91 49.5
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 1.8e-16 89.4 91 48.4
SGA_v2.0_scaffold20G09202 Striga asiatica HOM05D001920 ORTHO05D004895 1.8e-16 89.4 88 51.1
HPP92_005010 Vanilla planifolia HOM05D001920 ORTHO05D004895 1.8e-16 89.4 89 48.3
ClCG05G018010 Citrullus lanatus HOM05D001920 ORTHO05D004895 2.3e-16 89.0 88 51.1
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 2.3e-16 89.0 88 48.9
Oeu018622.1 Olea europaea HOM05D001920 ORTHO05D004895 2.3e-16 89.0 91 47.3
Actinidia25711 Actinidia chinensis HOM05D001920 ORTHO05D004895 3.0e-16 88.6 91 49.5
arahy.Tifrunner.gnm1.ann1.Z4JLGK Arachis hypogaea HOM05D001920 ORTHO05D004895 3.0e-16 88.6 89 50.6
Dinv12436 Davidia involucrata HOM05D001920 ORTHO05D004895 3.0e-16 88.6 91 49.5
Potri.006G225600 Populus trichocarpa HOM05D001920 ORTHO05D004895 3.0e-16 88.6 91 49.5
Hund03323 Selenicereus undatus HOM05D001920 ORTHO05D004895 3.0e-16 88.6 89 47.2
SEGI_07454 Sequoiadendron giganteum HOM05D001920 ORTHO05D004895 3.0e-16 88.6 94 47.9
Atru.chr7.1933 Acer truncatum HOM05D001920 ORTHO05D004895 4.0e-16 88.2 91 49.5
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 4.0e-16 88.2 89 49.4
Medtr1g015770 Medicago truncatula HOM05D001920 ORTHO05D004895 4.0e-16 88.2 89 49.4
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 6.8e-16 87.4 91 48.4
Haze_18152 Corylus avellana HOM05D001920 ORTHO05D004895 6.8e-16 87.4 91 48.4
Lj5g0021243 Lotus japonicus HOM05D001920 ORTHO05D004895 6.8e-16 87.4 89 49.4
Prupe.1G408900 Prunus persica HOM05D001920 ORTHO05D004895 6.8e-16 87.4 91 49.5
THA.LOC104819893 Tarenaya hassleriana HOM05D001920 ORTHO05D004895 6.8e-16 87.4 91 48.4
Ciclev10007880m.g Citrus clementina HOM05D001920 ORTHO05D004895 8.9e-16 87.0 91 49.5
Lsat_1_v5_gn_1_37201 Lactuca sativa HOM05D001920 ORTHO05D004895 8.9e-16 87.0 122 41.8
Sp4g06300 Schrenkiella parvula HOM05D001920 ORTHO05D004895 8.9e-16 87.0 91 48.4
TPR.G13113 Trifolium pratense HOM05D001920 ORTHO05D004895 8.9e-16 87.0 89 49.4
VMungo0647G0099 Vigna mungo HOM05D001920 ORTHO05D004895 8.9e-16 87.0 89 46.1
Migut.D00409 Erythranthe guttata HOM05D001920 ORTHO05D004895 1.5e-15 86.3 91 49.5
Carub.0001s3487 Capsella rubella HOM05D001920 ORTHO05D004895 2.0e-15 85.9 91 48.4
arahy.Tifrunner.gnm1.ann1.ZI5CY8 Arachis hypogaea HOM05D001920 ORTHO05D004895 2.6e-15 85.5 88 50.0
Cpa.g.sc7.156 Carica papaya HOM05D001920 ORTHO05D004895 2.6e-15 85.5 91 48.4
Mapoly0046s0004 Marchantia polymorpha HOM05D001920 ORTHO05D004895 2.6e-15 85.5 89 49.4
AagrBONN_evm.TU.Sc2ySwM_344.2922 Anthoceros agrestis HOM05D001920 ORTHO05D004895 3.4e-15 85.1 89 47.2
CiPaw.15G036700 Carya illinoinensis HOM05D001920 ORTHO05D004895 3.4e-15 85.1 91 47.3
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 3.4e-15 85.1 89 47.2
arahy.Tifrunner.gnm1.ann1.Z1X8E4 Arachis hypogaea HOM05D001920 ORTHO05D004895 7.5e-15 84.0 89 48.3
Phvul.001G092600 Phaseolus vulgaris HOM05D001920 ORTHO05D004895 7.5e-15 84.0 89 43.8
SMO352G0077 Selaginella moellendorffii HOM05D001920 ORTHO05D004895 9.8e-15 83.6 89 48.3
AL4G18730 Arabidopsis lyrata HOM05D001920 ORTHO05D004895 1.3e-14 83.2 91 47.3
AT2G26200 Arabidopsis thaliana HOM05D001920 ORTHO05D004895 1.3e-14 83.2 91 47.3
Thhalv10001947m.g Eutrema salsugineum HOM05D001920 ORTHO05D004895 1.3e-14 83.2 91 48.4
CARHR115020 Cardamine hirsuta HOM05D001920 ORTHO05D004895 1.7e-14 82.8 91 45.1
Sc23g0005760 Simmondsia chinensis HOM05D001920 ORTHO05D004895 2.2e-14 82.4 91 46.2
unitig_748.g8245 Utricularia gibba HOM05D001920 ORTHO05D004895 2.2e-14 82.4 91 47.3
A04p20270 Brassica napus HOM05D001920 ORTHO05D004895 2.9e-14 82.0 91 47.3
C04p55980 Brassica napus HOM05D001920 ORTHO05D004895 2.9e-14 82.0 91 47.3
BolC4t27131H Brassica oleracea HOM05D001920 ORTHO05D004895 2.9e-14 82.0 91 47.3
BraA04t17606Z Brassica rapa HOM05D001920 ORTHO05D004895 2.9e-14 82.0 91 47.3
Aa31LG5G9590 Aethionema arabicum HOM05D001920 ORTHO05D004895 3.7e-14 81.6 91 47.3
MD08G1065700 Malus domestica HOM05D001920 ORTHO05D004895 6.4e-14 80.9 91 46.2
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 7.0e-13 77.4 91 41.8
Duzib192G0188 Durio zibethinus HOM05D001920 ORTHO05D004895 1.3e-11 73.2 88 47.7
Rhsim12G0208400 Rhododendron simsii HOM05D001920 ORTHO05D000291 1.6e-09 66.2 36 83.3
CAN.G1312.6 Capsicum annuum HOM05D001920 ORTHO05D004895 6.2e-09 64.3 74 47.3
MCO01G470 Micromonas commoda HOM05D001920 ORTHO05D004895 1.3e-06 56.6 95 34.7


User provided reference genes

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