Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 1.6e-109 399.4 201 100.0
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 8.8e-92 340.5 202 85.6
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 4.4e-83 311.6 190 81.1
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 5.7e-83 311.2 190 80.0
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 6.3e-82 307.8 191 77.5
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 2.4e-81 305.8 191 77.5
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 4.1e-81 305.1 190 79.5
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 5.3e-81 304.7 187 84.0
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 2.0e-80 302.8 190 77.4
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 1.0e-79 300.4 192 78.6
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 1.3e-79 300.1 190 78.9
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 1.3e-79 300.1 188 80.3
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.7e-79 299.7 190 76.3
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 8.5e-79 297.4 185 79.5
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 8.5e-79 297.4 187 77.5
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 8.5e-79 297.4 194 76.3
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 1.9e-78 296.2 171 83.6
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.9e-78 296.2 187 77.5
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 2.5e-78 295.8 186 79.6
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 2.5e-78 295.8 178 87.1
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 3.2e-78 295.4 184 79.3
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 3.2e-78 295.4 188 76.6
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 5.5e-78 294.7 185 77.8
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 5.5e-78 294.7 188 76.6
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 2.1e-77 292.7 196 76.5
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 2.1e-77 292.7 191 74.9
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 3.6e-77 292.0 195 74.4
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 4.7e-77 291.6 187 77.5
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 4.7e-77 291.6 190 76.3
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 4.7e-77 291.6 187 77.0
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.7e-77 291.6 193 76.2
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 6.1e-77 291.2 191 75.4
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 6.1e-77 291.2 198 72.7
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 6.1e-77 291.2 188 77.7
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 1.0e-76 290.4 186 78.0
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 1.4e-76 290.0 198 72.2
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 1.4e-76 290.0 184 78.8
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.8e-76 289.7 187 77.0
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 3.0e-76 288.9 192 77.1
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 6.7e-76 287.7 187 77.0
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 8.8e-76 287.3 196 74.0
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 8.8e-76 287.3 187 75.9
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 1.2e-75 287.0 196 74.0
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 1.2e-75 287.0 185 76.2
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 1.5e-75 286.6 188 74.5
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 1.5e-75 286.6 189 72.0
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 2.0e-75 286.2 191 77.5
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 2.0e-75 286.2 188 76.1
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 3.3e-75 285.4 185 75.1
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.7e-75 284.6 196 73.0
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 7.5e-75 284.3 189 73.5
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 9.7e-75 283.9 190 74.7
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 2.8e-74 282.3 187 73.8
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 4.8e-74 281.6 187 75.9
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 6.3e-74 281.2 195 71.3
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 1.8e-73 279.6 189 72.0
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 4.1e-73 278.5 191 73.8
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 1.2e-72 276.9 196 68.4
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.0e-72 276.2 188 69.1
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 2.7e-72 275.8 185 74.6
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 1.0e-71 273.9 185 74.1
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 1.7e-71 273.1 185 74.6
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.7e-71 273.1 189 68.8
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 1.7e-71 273.1 187 73.8
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 2.9e-71 272.3 192 68.2
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 2.9e-71 272.3 185 72.4
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 2.9e-71 272.3 168 81.5
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 3.8e-71 271.9 187 71.1
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.0e-71 271.6 187 71.7
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 8.5e-71 270.8 185 73.5
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 1.1e-70 270.4 196 69.4
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 2.5e-70 269.2 167 83.2
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 7.2e-70 267.7 180 73.3
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.6e-69 266.5 187 70.1
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.6e-69 266.5 193 69.9
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 2.1e-69 266.2 168 78.6
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 1.0e-68 263.8 185 71.9
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.0e-68 263.8 168 76.8
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 1.0e-68 263.8 168 79.8
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 1.4e-68 263.5 186 69.9
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 2.3e-68 262.7 187 67.9
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 3.0e-68 262.3 165 77.6
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 3.0e-68 262.3 177 71.8
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 4.0e-68 261.9 185 69.7
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 5.2e-68 261.5 182 72.5
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 6.8e-68 261.2 177 74.0
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 8.8e-68 260.8 169 76.3
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 8.8e-68 260.8 165 77.6
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 2.0e-67 259.6 196 68.4
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 4.4e-67 258.5 186 69.9
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 5.7e-67 258.1 183 69.4
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 7.5e-67 257.7 188 71.3
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 9.8e-67 257.3 199 70.4
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 9.8e-67 257.3 186 68.8
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 3.7e-66 255.4 186 68.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 1.4e-65 253.4 187 67.9
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 1.8e-65 253.1 165 76.4
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 3.1e-65 252.3 194 67.5
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.2e-64 250.4 167 75.4
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.0e-64 249.6 196 65.8
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 2.9e-63 245.7 167 72.5
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 4.2e-62 241.9 185 65.9
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 7.2e-62 241.1 167 71.9
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 4.7e-61 238.4 178 68.0
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 1.0e-60 237.3 164 72.6
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.4e-60 236.9 177 67.2
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 5.2e-60 235.0 163 67.5
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 2.6e-59 232.6 187 60.4
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 5.7e-59 231.5 188 64.4
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 7.5e-59 231.1 183 62.3
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 7.5e-59 231.1 139 79.9
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.4e-57 226.9 139 77.0
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 2.4e-57 226.1 188 62.8
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 7.0e-57 224.6 186 63.4
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 9.2e-57 224.2 184 59.8
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 2.7e-56 222.6 185 57.8
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 7.8e-56 221.1 186 59.1
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.7e-55 219.9 186 61.3
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 2.9e-55 219.2 191 58.1
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.5e-54 216.9 164 64.6
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 5.6e-54 214.9 199 54.3
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 3.1e-52 209.1 185 58.9
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 1.3e-50 203.8 195 53.3
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.4e-49 198.4 145 71.0
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 3.5e-48 195.7 197 53.8
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 5.0e-47 191.8 110 84.5
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 5.0e-47 191.8 125 76.8
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 1.6e-45 186.8 130 70.8
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.6e-40 170.2 192 45.8
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 3.9e-39 165.6 113 73.5
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.5e-38 163.7 115 68.7
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.1e-37 159.8 167 55.1
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.2e-35 154.1 128 57.8
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 9.6e-22 107.8 116 52.6
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 2.5e-14 83.2 60 68.3
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 3.3e-14 82.8 52 75.0
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 2.2e-10 70.1 56 58.9
Sopen12g022580 Solanum pennellii HOM05D005658 ORTHO05D006989 2.4e-09 66.6 176 34.1
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 4.6e-08 62.4 177 28.8
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 1.0e-07 61.2 172 27.9
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 1.0e-07 61.2 170 28.2
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 1.8e-07 60.5 176 29.5
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 8.7e-07 58.2 169 29.6
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.5e-06 57.4 191 27.2
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 1.5e-06 57.4 171 27.5
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 1.9e-06 57.0 176 29.5
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 1.9e-06 57.0 180 27.2
Zm00001eb237290 Zea mays HOM05D005658 ORTHO05D006989 1.9e-06 57.0 54 55.6
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 2.5e-06 56.6 173 28.9
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 4.3e-06 55.8 173 27.2
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 4.3e-06 55.8 173 27.2
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 5.6e-06 55.5 166 28.9
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 5.6e-06 55.5 190 27.4
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 7.4e-06 55.1 171 27.5
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 9.6e-06 54.7 173 27.2
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 9.6e-06 54.7 170 27.1


User provided reference genes

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