Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031661 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 3.0e-31 137.9 69 100.0
CSS0040787 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 8.6e-23 109.8 102 61.8
CSS0016559 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 6.2e-13 77.0 36 94.4
Actinidia10240 Actinidia chinensis HOM05D000779 ORTHO05D000246 8.4e-10 66.6 36 86.1
Actinidia19281 Actinidia chinensis HOM05D000779 ORTHO05D000246 8.4e-10 66.6 36 86.1
Hma1.2p1_1068F.1_g253980 Hydrangea macrophylla HOM05D000779 ORTHO05D000246 8.4e-10 66.6 36 86.1
Lj4C78G5 Lonicera japonica HOM05D000779 ORTHO05D000246 8.4e-10 66.6 36 86.1
DCAR_019342 Daucus carota HOM05D000779 ORTHO05D000246 2.4e-09 65.1 36 83.3
vmacro21400 Vaccinium macrocarpon HOM05D000779 ORTHO05D000246 2.4e-09 65.1 36 83.3
MSTRG.22200 Avicennia marina HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 83.3
CSS0033696 Camellia sinensis var. sinensis HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
COL.COLO4_35372 Corchorus olitorius HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
Dinv44917 Davidia involucrata HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 83.3
Duzib041G0151 Durio zibethinus HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
Duzib093G2177 Durio zibethinus HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
Gohir.A05G213100 Gossypium hirsutum HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
Gohir.D05G216500 Gossypium hirsutum HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
Gorai.009G223200 Gossypium raimondii HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
Thecc.08G081900 Theobroma cacao HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
TWI12G0165 Tripterygium wilfordii HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
TWI56G0557 Tripterygium wilfordii HOM05D000779 ORTHO05D000246 4.2e-09 64.3 36 80.6
Cc10_g07850 Coffea canephora HOM05D000779 ORTHO05D000246 7.1e-09 63.5 36 83.3
Migut.N02807 Erythranthe guttata HOM05D000779 ORTHO05D000246 7.1e-09 63.5 36 83.3
Duzib116G0024 Durio zibethinus HOM05D000779 ORTHO05D000246 1.2e-08 62.8 36 77.8
Manes.18G052901 Manihot esculenta HOM05D000779 ORTHO05D000246 1.2e-08 62.8 36 77.8
THA.LOC104806966 Tarenaya hassleriana HOM05D000779 ORTHO05D000246 1.2e-08 62.8 36 77.8
Manes.05G184900 Manihot esculenta HOM05D000779 ORTHO05D000246 1.6e-08 62.4 36 77.8
Lsat_1_v5_gn_6_108340 Lactuca sativa HOM05D000779 ORTHO05D000246 2.1e-08 62.0 38 81.6
CANSAT25G3577 Cannabis sativa HOM05D000779 ORTHO05D000246 2.7e-08 61.6 36 77.8
ECA246G2427 Erigeron canadensis HOM05D000779 ORTHO05D000246 2.7e-08 61.6 38 81.6
Potri.002G113300 Populus trichocarpa HOM05D000779 ORTHO05D000246 2.7e-08 61.6 36 77.8
Sabra02G0089800 Salix brachista HOM05D000779 ORTHO05D000246 2.7e-08 61.6 36 77.8
DCAR_012830 Daucus carota HOM05D000779 ORTHO05D000246 3.5e-08 61.2 36 77.8
Gohir.A06G027200 Gossypium hirsutum HOM05D000779 ORTHO05D000246 3.5e-08 61.2 36 77.8
Gorai.010G029000 Gossypium raimondii HOM05D000779 ORTHO05D000246 3.5e-08 61.2 36 77.8
Oeu053667.3 Olea europaea HOM05D000779 ORTHO05D000246 4.6e-08 60.8 34 82.4
THA.LOC104825802 Tarenaya hassleriana HOM05D000779 ORTHO05D000246 4.6e-08 60.8 36 75.0
MSTRG.24397 Avicennia marina HOM05D000779 ORTHO05D000246 6.0e-08 60.5 36 77.8
Eucgr.F00106 Eucalyptus grandis HOM05D000779 ORTHO05D000246 6.0e-08 60.5 36 75.0
CiPaw.15G043300 Carya illinoinensis HOM05D000779 ORTHO05D000246 7.9e-08 60.1 36 75.0
Medtr1g017080 Medicago truncatula HOM05D000779 ORTHO05D000246 7.9e-08 60.1 36 75.0
Psat0s1648g0080 Pisum sativum HOM05D000779 ORTHO05D000246 7.9e-08 60.1 36 75.0
Prupe.1G416700 Prunus persica HOM05D000779 ORTHO05D000246 7.9e-08 60.1 36 75.0
GSVIVG01009273001 Vitis vinifera HOM05D000779 ORTHO05D000246 7.9e-08 60.1 36 77.8
Atru.chr13.899 Acer truncatum HOM05D000779 ORTHO05D000246 1.0e-07 59.7 37 78.4
Cfa017915 Carpinus fangiana HOM05D000779 ORTHO05D000246 1.3e-07 59.3 36 72.2
Haze_18237 Corylus avellana HOM05D000779 ORTHO05D000246 1.3e-07 59.3 36 72.2
Hund05256 Selenicereus undatus HOM05D000779 ORTHO05D000246 1.8e-07 58.9 34 73.5
TAR381G1392 Trochodendron aralioides HOM05D000779 ORTHO05D000246 1.8e-07 58.9 36 75.0
Gohir.D06G024500 Gossypium hirsutum HOM05D000779 ORTHO05D000246 3.9e-07 57.8 36 75.0
Peaxi162Scf00628g00311 Petunia axillaris HOM05D000779 ORTHO05D000246 3.9e-07 57.8 36 77.8
Ciclev10001508m.g Citrus clementina HOM05D000779 ORTHO05D000246 5.1e-07 57.4 37 75.7
Nitab4.5_0001614g0180 Nicotiana tabacum HOM05D000779 ORTHO05D000246 5.1e-07 57.4 35 80.0
Nitab4.5_0005726g0010 Nicotiana tabacum HOM05D000779 ORTHO05D000246 5.1e-07 57.4 35 80.0
QL02p001931 Quercus lobata HOM05D000779 ORTHO05D000246 5.1e-07 57.4 35 71.4
ClCG05G017660 Citrullus lanatus HOM05D000779 ORTHO05D000246 6.7e-07 57.0 36 72.2
CsaV3_4G035390 Cucumis sativus L. HOM05D000779 ORTHO05D000246 6.7e-07 57.0 36 72.2
Sed0020752 Sechium edule HOM05D000779 ORTHO05D000246 6.7e-07 57.0 36 72.2
Lj5g0012934 Lotus japonicus HOM05D000779 ORTHO05D000246 8.7e-07 56.6 36 72.2
EL10Ac1g02334 Beta vulgaris HOM05D000779 ORTHO05D000246 1.1e-06 56.2 34 70.6
CiPaw.16G031100 Carya illinoinensis HOM05D000779 ORTHO05D000246 1.1e-06 56.2 34 73.5
AUR62039335 Chenopodium quinoa HOM05D000779 ORTHO05D000246 1.1e-06 56.2 34 70.6
TAR376G0473 Trochodendron aralioides HOM05D000779 ORTHO05D000246 1.1e-06 56.2 36 69.4
AL6G41780 Arabidopsis lyrata HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
AT4G08150 Arabidopsis thaliana HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
BcaB01g02876 Brassica carinata HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
BcaC01g04781 Brassica carinata HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
A03p27950 Brassica napus HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
C03p33750 Brassica napus HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
BolC3t15694H Brassica oleracea HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
BraA03t12008Z Brassica rapa HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
Carub.0006s2670 Capsella rubella HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
Thhalv10028724m.g Eutrema salsugineum HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
Glyma.14G091200 Glycine max HOM05D000779 ORTHO05D000246 1.5e-06 55.8 36 69.4
Glyma.17G232205 Glycine max HOM05D000779 ORTHO05D000246 1.5e-06 55.8 36 69.4
Phvul.001G032200 Phaseolus vulgaris HOM05D000779 ORTHO05D000246 1.5e-06 55.8 36 69.4
PGR083G0232 Punica granatum HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
Sp6g10130 Schrenkiella parvula HOM05D000779 ORTHO05D000246 1.5e-06 55.8 37 73.0
VMungo0647G0755 Vigna mungo HOM05D000779 ORTHO05D000246 1.5e-06 55.8 36 69.4
Aa31sc59G10 Aethionema arabicum HOM05D000779 ORTHO05D000246 1.9e-06 55.5 37 73.0
FvH4_2g32400 Fragaria vesca HOM05D000779 ORTHO05D000246 1.9e-06 55.5 37 73.0
FAN15G2645 Fragaria x ananassa HOM05D000779 ORTHO05D000246 1.9e-06 55.5 37 73.0
FAN24G2287 Fragaria x ananassa HOM05D000779 ORTHO05D000246 1.9e-06 55.5 37 73.0
RcHm_v2.0_Chr6g0310301 Rosa chinensis HOM05D000779 ORTHO05D000246 1.9e-06 55.5 37 73.0
Solyc04g077210.3 Solanum lycopersicum HOM05D000779 ORTHO05D000246 1.9e-06 55.5 35 77.1
MELO3C016850.2 Cucumis melo HOM05D000779 ORTHO05D000246 2.5e-06 55.1 36 69.4
SGA_v2.0_scaffold28G11847 Striga asiatica HOM05D000779 ORTHO05D000246 2.5e-06 55.1 37 75.7
CDE06G2668 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 3.3e-06 54.7 36 63.9
HanXRQChr05g0163601 Helianthus annuus HOM05D000779 ORTHO05D000246 3.3e-06 54.7 39 76.9
CDE04G0701 Ceratophyllum demersum HOM05D000779 ORTHO05D000246 4.3e-06 54.3 36 63.9
MBI16_g08499_MAGBIO Magnolia biondii HOM05D000779 ORTHO05D000246 4.3e-06 54.3 36 66.7
FAN20G2736 Fragaria x ananassa HOM05D000779 ORTHO05D000246 7.4e-06 53.5 38 68.4
unitig_21.g20621 Utricularia gibba HOM05D000779 ORTHO05D000246 7.4e-06 53.5 37 70.3
CAN.G416.42 Capsicum annuum HOM05D000779 ORTHO05D000246 9.6e-06 53.1 35 74.3
PGSC0003DMG400004953 Solanum tuberosum HOM05D000779 ORTHO05D000246 9.6e-06 53.1 35 74.3


User provided reference genes

Program Settings