Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031660 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 1.1e-62 243.0 119 100.0
CSS0016097 Camellia sinensis var. sinensis HOM05D005624 ORTHO05D006896 4.2e-33 144.8 100 75.0
Actinidia33983 Actinidia chinensis HOM05D005624 ORTHO05D006896 6.9e-28 127.5 100 64.0
Hund05398 Selenicereus undatus HOM05D005624 ORTHO05D006896 2.6e-27 125.6 100 64.0
QL03p047013 Quercus lobata HOM05D005624 ORTHO05D006896 3.4e-27 125.2 100 64.0
Sc17g0003450 Simmondsia chinensis HOM05D005624 ORTHO05D006896 4.5e-27 124.8 100 63.0
CiPaw.05G096300 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.3e-26 123.2 100 64.0
ECA236G4393 Erigeron canadensis HOM05D000127 ORTHO05D000243 1.7e-26 122.9 88 70.5
Ah.03g134040 Amaranthus hybridus HOM05D005624 ORTHO05D006896 2.2e-26 122.5 100 63.0
Lj3A918T40 Lonicera japonica HOM05D005624 ORTHO05D006896 2.2e-26 122.5 100 63.0
Rhsim12G0090500 Rhododendron simsii HOM05D005624 ORTHO05D006896 3.8e-26 121.7 100 63.0
vmacro16032 Vaccinium macrocarpon HOM05D005624 ORTHO05D006896 3.8e-26 121.7 100 62.0
EL10Ac7g17520 Beta vulgaris HOM05D005624 ORTHO05D006896 1.1e-25 120.2 100 62.0
AUR62008562 Chenopodium quinoa HOM05D005624 ORTHO05D006896 1.1e-25 120.2 100 62.0
Solyc02g005603.1 Solanum lycopersicum HOM05D005624 ORTHO05D006896 1.1e-25 120.2 100 63.0
Peaxi162Scf00334g00119 Petunia axillaris HOM05D005624 ORTHO05D006896 1.4e-25 119.8 100 63.0
Sopen02g002020 Solanum pennellii HOM05D005624 ORTHO05D006896 1.4e-25 119.8 100 63.0
CiPaw.06G112400 Carya illinoinensis HOM05D005624 ORTHO05D006896 1.9e-25 119.4 102 62.7
Ciclev10005917m.g Citrus clementina HOM05D005624 ORTHO05D006896 1.9e-25 119.4 100 63.0
PGSC0003DMG400029983 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.9e-25 119.4 100 63.0
MSTRG.8074 Avicennia marina HOM05D005624 ORTHO05D006896 2.5e-25 119.0 100 60.0
PGR119G0553 Punica granatum HOM05D005624 ORTHO05D006896 3.2e-25 118.6 100 60.0
Lsat_1_v5_gn_1_78160 Lactuca sativa HOM05D005624 ORTHO05D006896 4.2e-25 118.2 101 62.4
Cfa020947 Carpinus fangiana HOM05D005624 ORTHO05D006896 5.5e-25 117.9 100 61.0
Haze_19383 Corylus avellana HOM05D005624 ORTHO05D006896 5.5e-25 117.9 100 61.0
Thecc.05G235200 Theobroma cacao HOM05D005624 ORTHO05D006896 5.5e-25 117.9 100 61.0
Potri.003G158200 Populus trichocarpa HOM05D005624 ORTHO05D006896 7.2e-25 117.5 100 62.0
Sabra01G0051200 Salix brachista HOM05D005624 ORTHO05D006896 7.2e-25 117.5 100 62.0
SalBow2G1530 Salvia bowleyana HOM05D005624 ORTHO05D006896 7.2e-25 117.5 87 69.0
CAN.G39.18 Capsicum annuum HOM05D005624 ORTHO05D006896 9.3e-25 117.1 100 62.0
AUR62033199 Chenopodium quinoa HOM05D005624 ORTHO05D006896 9.3e-25 117.1 100 61.0
Atru.chr12.1491 Acer truncatum HOM05D005624 ORTHO05D006896 1.2e-24 116.7 100 62.0
Dinv02966 Davidia involucrata HOM05D005624 ORTHO05D006896 1.6e-24 116.3 100 60.0
HPP92_013550 Vanilla planifolia HOM05D005624 ORTHO05D006896 2.1e-24 115.9 87 69.0
Gohir.A08G221500 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.7e-24 115.5 100 60.0
Gohir.D08G238100 Gossypium hirsutum HOM05D005624 ORTHO05D006896 2.7e-24 115.5 100 60.0
Gorai.004G253600 Gossypium raimondii HOM05D005624 ORTHO05D006896 2.7e-24 115.5 100 60.0
HanXRQChr01g0012261 Helianthus annuus HOM05D005624 ORTHO05D006896 3.5e-24 115.2 87 64.4
Sed0018373 Sechium edule HOM05D005624 ORTHO05D006896 3.5e-24 115.2 100 60.0
Potri.001G072600 Populus trichocarpa HOM05D005624 ORTHO05D006896 4.6e-24 114.8 100 61.0
VMungo0251G1277 Vigna mungo HOM05D005624 ORTHO05D006896 4.6e-24 114.8 100 57.0
HanXRQChr10g0312121 Helianthus annuus HOM05D005624 ORTHO05D006896 6.1e-24 114.4 87 65.5
ClCG10G013180 Citrullus lanatus HOM05D005624 ORTHO05D006896 7.9e-24 114.0 100 60.0
GSVIVG01001144001 Vitis vinifera HOM05D005624 ORTHO05D006896 7.9e-24 114.0 100 58.0
COL.COLO4_32213 Corchorus olitorius HOM05D005624 ORTHO05D006896 1.0e-23 113.6 100 59.0
Medtr8g070860 Medicago truncatula HOM05D005624 ORTHO05D006896 1.0e-23 113.6 100 59.0
Duzib128G1380 Durio zibethinus HOM05D005624 ORTHO05D006896 1.3e-23 113.2 100 59.0
Nitab4.5_0001089g0030 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.3e-23 113.2 100 62.0
Nitab4.5_0011777g0020 Nicotiana tabacum HOM05D005624 ORTHO05D006896 1.3e-23 113.2 100 62.0
Manes.08G097600 Manihot esculenta HOM05D005624 ORTHO05D006896 2.3e-23 112.5 100 58.0
TPR.G6115 Trifolium pratense HOM05D005624 ORTHO05D006896 2.3e-23 112.5 104 57.7
Aqoxy3G01649 Aquilegia oxysepala HOM05D005624 ORTHO05D006896 3.0e-23 112.1 101 60.4
Oeu032685.1 Olea europaea HOM05D005624 ORTHO05D006896 3.0e-23 112.1 100 57.0
Peaxi162Scf00681g00118 Petunia axillaris HOM05D005624 ORTHO05D006896 3.0e-23 112.1 100 60.0
DCAR_028131 Daucus carota HOM05D005624 ORTHO05D006896 3.9e-23 111.7 100 60.0
Hma1.2p1_0562F.1_g179050 Hydrangea macrophylla HOM05D005624 ORTHO05D006896 3.9e-23 111.7 105 58.1
Glyma.08G266400 Glycine max HOM05D005624 ORTHO05D006896 5.1e-23 111.3 100 57.0
MBI07_g41258_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 5.1e-23 111.3 103 59.2
unitig_8.g3112 Utricularia gibba HOM05D005624 ORTHO05D006896 5.1e-23 111.3 87 63.2
MELO3C026760.2 Cucumis melo HOM05D005624 ORTHO05D006896 6.7e-23 110.9 100 59.0
CsaV3_3G043430 Cucumis sativus L. HOM05D005624 ORTHO05D006896 6.7e-23 110.9 100 59.0
Glyma.16G101200 Glycine max HOM05D005624 ORTHO05D006896 6.7e-23 110.9 100 57.0
BcaB01g05468 Brassica carinata HOM05D005624 ORTHO05D006896 8.7e-23 110.5 101 60.4
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 8.7e-23 110.5 101 60.4
BolC3t13101H Brassica oleracea HOM05D005624 ORTHO05D006896 8.7e-23 110.5 101 60.4
Lsat_1_v5_gn_5_173840 Lactuca sativa HOM05D005624 ORTHO05D006896 8.7e-23 110.5 87 63.2
CARHR201540 Cardamine hirsuta HOM05D005624 ORTHO05D006896 1.5e-22 109.8 105 59.0
Zm00001eb036000 Zea mays HOM05D005624 ORTHO05D006896 1.5e-22 109.8 90 64.4
Zm00001eb071390 Zea mays HOM05D005624 ORTHO05D006896 1.5e-22 109.8 103 58.3
MD13G1135700 Malus domestica HOM05D005624 ORTHO05D006896 1.9e-22 109.4 102 59.8
TWI75G1298 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 1.9e-22 109.4 100 58.0
Zm00001eb052330 Zea mays HOM05D005624 ORTHO05D006896 1.9e-22 109.4 90 64.4
Aa31LG3G15530 Aethionema arabicum HOM05D000602 ORTHO05D001147 2.5e-22 109.0 105 58.1
AL6G22400 Arabidopsis lyrata HOM05D005624 ORTHO05D006896 2.5e-22 109.0 105 58.1
arahy.Tifrunner.gnm1.ann1.CA7SJ1 Arachis hypogaea HOM05D005624 ORTHO05D006896 2.5e-22 109.0 101 57.4
arahy.Tifrunner.gnm1.ann1.YB0CZG Arachis hypogaea HOM05D005624 ORTHO05D006896 2.5e-22 109.0 101 57.4
BcaC03g13386 Brassica carinata HOM05D005624 ORTHO05D006896 2.5e-22 109.0 105 58.1
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 2.5e-22 109.0 92 64.1
BolC2t06481H Brassica oleracea HOM05D005624 ORTHO05D006896 2.5e-22 109.0 104 58.7
Eucgr.J01702 Eucalyptus grandis HOM05D005624 ORTHO05D006896 2.5e-22 109.0 100 57.0
FvH4_4g21930 Fragaria vesca HOM05D005624 ORTHO05D006896 2.5e-22 109.0 102 57.8
BraA03t09846Z Brassica rapa HOM05D005624 ORTHO05D006896 3.3e-22 108.6 105 58.1
Phvul.003G274200 Phaseolus vulgaris HOM05D005624 ORTHO05D006896 3.3e-22 108.6 104 54.8
Sp6g31930 Schrenkiella parvula HOM05D005624 ORTHO05D006896 3.3e-22 108.6 105 58.1
Thhalv10014678m.g Eutrema salsugineum HOM05D005624 ORTHO05D006896 4.3e-22 108.2 106 57.5
Prupe.1G209600 Prunus persica HOM05D005624 ORTHO05D006896 4.3e-22 108.2 102 59.8
TAR622G0071 Trochodendron aralioides HOM05D005624 ORTHO05D006896 4.3e-22 108.2 103 58.3
Zm00001eb318180 Zea mays HOM05D005624 ORTHO05D006896 4.3e-22 108.2 103 57.3
AT5G11680 Arabidopsis thaliana HOM05D005624 ORTHO05D006896 5.7e-22 107.8 105 58.1
CANSAT25G1757 Cannabis sativa HOM05D005624 ORTHO05D006896 5.7e-22 107.8 104 60.6
THA.LOC104811263 Tarenaya hassleriana HOM05D005624 ORTHO05D006896 5.7e-22 107.8 102 58.8
ATR0582G264 Amborella trichopoda HOM05D005624 ORTHO05D006896 7.4e-22 107.5 91 60.4
FAN17G0486 Fragaria x ananassa HOM05D005624 ORTHO05D006896 7.4e-22 107.5 102 56.9
Carub.0006s1018 Capsella rubella HOM05D005624 ORTHO05D006896 9.7e-22 107.1 105 58.1
Cc11_g14800 Coffea canephora HOM05D005624 ORTHO05D006896 9.7e-22 107.1 100 58.0
Migut.L00899 Erythranthe guttata HOM05D005624 ORTHO05D006896 9.7e-22 107.1 101 55.4
MD16G1131300 Malus domestica HOM05D005624 ORTHO05D006896 9.7e-22 107.1 102 59.8
Psat4g111480 Pisum sativum HOM05D005624 ORTHO05D006896 9.7e-22 107.1 100 55.0
RcHm_v2.0_Chr4g0428141 Rosa chinensis HOM05D005624 ORTHO05D006896 9.7e-22 107.1 102 55.9
PSO478G3843 Papaver somniferum HOM05D005624 ORTHO05D006896 1.3e-21 106.7 105 57.1
Zm00001eb102600 Zea mays HOM05D005624 ORTHO05D006896 1.3e-21 106.7 103 56.3
Sed0005404 Sechium edule HOM05D005624 ORTHO05D006896 2.2e-21 105.9 100 57.0
Lj4g0021292 Lotus japonicus HOM05D005624 ORTHO05D006896 2.8e-21 105.5 102 55.9
Sopen04g004320 Solanum pennellii HOM05D005624 ORTHO05D006896 2.8e-21 105.5 100 59.0
PGSC0003DMG402032565 Solanum tuberosum HOM05D005624 ORTHO05D006896 2.8e-21 105.5 100 59.0
PSO017G6046 Papaver somniferum HOM05D005624 ORTHO05D006896 4.8e-21 104.8 105 56.2
Solyc04g009190.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 8.2e-21 104.0 100 59.0
TWI18G0768 Tripterygium wilfordii HOM05D005624 ORTHO05D006896 8.2e-21 104.0 100 55.0
unitig_22.g6367 Utricularia gibba HOM05D005624 ORTHO05D006896 1.8e-20 102.8 100 53.0
CAN.G619.7 Capsicum annuum HOM05D005624 ORTHO05D006896 9.0e-20 100.5 100 58.0
MBI11_g04265_MAGBIO Magnolia biondii HOM05D005624 ORTHO05D006896 2.9e-18 95.5 99 53.5
AagrBONN_evm.TU.Sc2ySwM_117.3158 Anthoceros agrestis HOM05D005624 ORTHO05D006896 5.5e-17 91.3 85 55.3
Gohir.A13G159151 Gossypium hirsutum HOM05D005624 ORTHO05D006896 5.5e-17 91.3 94 53.2
Gorai.013G198700 Gossypium raimondii HOM05D005624 ORTHO05D006896 1.2e-16 90.1 94 52.1
Pp3c7_9270 Physcomitrium patens HOM05D005624 ORTHO05D006896 1.6e-16 89.7 91 51.6
Mapoly0097s0090 Marchantia polymorpha HOM05D005624 ORTHO05D006896 1.1e-14 83.6 100 44.0
Peaxi162Scf00021g02113 Petunia axillaris HOM05D005624 ORTHO05D006896 2.5e-14 82.4 100 48.0
Nitab4.5_0000069g0230 Nicotiana tabacum HOM05D005624 ORTHO05D006896 7.4e-14 80.9 99 46.5
Duzib177G0503 Durio zibethinus HOM05D005624 ORTHO05D006896 1.7e-13 79.7 85 52.9
Nitab4.5_0004301g0080 Nicotiana tabacum HOM05D005624 ORTHO05D006896 2.2e-13 79.3 99 45.5
SMO164G0111 Selaginella moellendorffii HOM05D005624 ORTHO05D006896 4.8e-13 78.2 100 40.0
CBR_g24147 Chara braunii HOM05D005624 ORTHO05D006896 2.4e-12 75.9 62 56.5
PGSC0003DMG400016363 Solanum tuberosum HOM05D005624 ORTHO05D006896 1.9e-09 66.2 88 44.3
C02p05330 Brassica napus HOM05D005624 ORTHO05D006896 3.2e-09 65.5 72 51.4
Lalb_Chr05g0228971 Lupinus albus HOM05D005624 ORTHO05D006896 5.5e-09 64.7 48 64.6
Solyc01g008220.3 Solanum lycopersicum HOM05D005624 ORTHO05D006896 7.2e-09 64.3 88 44.3


User provided reference genes

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