Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.6e-297 1025.4 548 100.0
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.2e-294 1015.0 548 99.3
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.0e-178 629.8 586 65.2
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.0e-174 617.5 572 64.5
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.5e-170 603.6 580 62.1
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 9.2e-160 567.8 625 57.9
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 6.4e-153 545.0 634 56.3
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.0e-150 537.7 574 59.4
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.9e-144 516.9 561 56.0
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 7.1e-144 515.0 376 74.5
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.3e-140 504.2 562 56.8
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 7.3e-133 478.4 443 65.5
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.1e-131 473.0 575 53.9
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 5.3e-131 472.2 556 53.6
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 1.2e-130 471.1 558 52.3
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 2.9e-129 466.5 581 52.3
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 3.2e-128 463.0 565 51.0
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 1.2e-127 461.1 568 50.5
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 2.1e-127 460.3 560 53.4
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 2.7e-127 459.9 546 54.8
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 4.6e-127 459.1 569 51.7
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 6.0e-127 458.8 560 53.0
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 8.7e-126 454.9 573 50.1
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 5.6e-125 452.2 575 52.7
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 3.7e-124 449.5 581 51.5
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 6.2e-124 448.7 564 50.4
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 6.2e-124 448.7 552 51.3
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 1.4e-123 447.6 379 66.2
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 5.3e-123 445.7 562 50.0
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 2.0e-122 443.7 564 51.8
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 1.0e-121 441.4 556 50.2
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 2.2e-121 440.3 550 49.8
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.9e-120 437.2 561 50.3
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 3.2e-120 436.4 558 50.2
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 3.2e-120 436.4 559 49.9
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 3.2e-120 436.4 559 49.9
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 1.2e-119 434.5 388 64.4
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 4.6e-119 432.6 559 49.0
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 2.3e-118 430.3 551 50.1
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 3.0e-118 429.9 576 49.7
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 5.1e-118 429.1 588 49.0
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 6.7e-118 428.7 561 51.0
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 1.3e-116 424.5 556 50.9
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.3e-116 424.5 538 50.9
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.3e-116 424.5 533 53.8
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.6e-116 424.1 446 61.2
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 2.8e-116 423.3 558 49.5
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 2.8e-116 423.3 372 62.6
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 3.7e-116 422.9 578 49.0
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 8.2e-116 421.8 553 48.6
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 8.2e-116 421.8 553 48.6
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 3.1e-115 419.9 558 48.7
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 5.3e-115 419.1 553 48.3
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 6.9e-115 418.7 350 66.9
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 9.0e-115 418.3 555 48.8
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.2e-114 417.9 558 48.7
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 7.6e-114 415.2 557 47.9
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 7.6e-114 415.2 539 50.8
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 1.7e-113 414.1 598 47.0
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.2e-113 413.7 557 48.5
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 1.4e-112 411.0 568 47.9
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 1.9e-112 410.6 590 46.8
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 5.5e-112 409.1 559 48.8
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 7.2e-112 408.7 378 62.7
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 1.8e-110 404.1 561 48.5
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 1.8e-110 404.1 561 48.5
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 1.8e-110 404.1 567 48.0
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 2.3e-110 403.7 550 49.8
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 2.3e-110 403.7 367 62.4
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 1.1e-109 401.4 580 47.8
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 1.5e-109 401.0 611 46.8
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 3.3e-109 399.8 383 60.1
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 4.3e-109 399.4 581 46.3
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 9.7e-109 398.3 580 50.5
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 2.2e-108 397.1 317 68.5
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 4.5e-106 389.4 564 46.6
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 2.2e-105 387.1 573 47.6
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 1.9e-104 384.0 542 51.5
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 3.2e-104 383.3 584 45.2
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 5.5e-104 382.5 384 57.8
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 7.2e-104 382.1 553 47.7
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 2.1e-103 380.6 414 55.8
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 2.7e-103 380.2 424 54.2
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 2.7e-103 380.2 384 57.6
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 7.9e-103 378.6 569 45.3
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 3.9e-102 376.3 571 45.4
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 5.1e-102 375.9 389 57.8
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 6.7e-102 375.6 279 71.0
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 2.0e-101 374.0 454 52.2
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 3.3e-101 373.2 397 55.7
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 2.2e-100 370.5 547 46.4
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 6.3e-100 369.0 387 57.1
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 6.3e-100 369.0 386 56.5
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 1.4e-99 367.9 387 56.8
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 1.4e-99 367.9 387 56.8
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 1.8e-99 367.5 386 56.2
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 5.3e-99 365.9 554 46.2
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 3.4e-98 363.2 382 56.8
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 4.5e-98 362.8 552 46.2
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 1.7e-97 360.9 390 55.6
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 2.2e-97 360.5 389 54.8
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.9e-97 360.1 392 55.4
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 7.2e-96 355.5 551 46.6
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 3.6e-95 353.2 487 49.9
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 1.7e-89 334.3 377 53.6
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 5.0e-89 332.8 372 53.5
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 1.9e-88 330.9 363 55.4
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 1.9e-88 330.9 361 55.7
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 7.2e-88 328.9 354 55.6
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.4e-83 314.7 419 50.6
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 1.1e-80 305.1 423 49.2
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.0e-70 270.4 141 96.5
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.3e-65 255.0 132 97.7
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.2e-51 207.2 108 99.1
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 9.2e-51 205.7 370 38.6
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 2.3e-49 201.1 251 45.0
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.8e-46 191.4 269 48.0
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 8.3e-44 182.6 456 33.1
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 1.9e-43 181.4 518 34.6
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 1.6e-42 178.3 341 39.6
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 1.2e-39 168.7 195 50.8
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 5.4e-35 153.3 318 35.8
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 6.2e-31 139.8 205 43.4
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 3.4e-29 134.0 112 63.4
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 3.2e-27 127.5 199 43.2
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 3.2e-27 127.5 199 43.2
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 5.4e-27 126.7 103 61.2
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 5.4e-27 126.7 103 61.2
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 3.0e-25 120.9 171 52.0
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 8.7e-25 119.4 199 42.2
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 1.1e-24 119.0 358 31.0
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 6.4e-20 103.2 207 38.2
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 6.7e-17 93.2 146 47.3
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.3e-16 90.9 65 70.8
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 8.4e-12 76.3 250 31.2
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 7.9e-10 69.7 215 27.0
Ciclev10027463m.g Citrus clementina HOM05D000285 ORTHO05D000241 4.3e-08 63.9 207 25.1
Aa31LG10G10350 Aethionema arabicum HOM05D006053 ORTHO05D008381 2.8e-07 61.2 248 23.4
C08p30500 Brassica napus HOM05D006053 ORTHO05D008381 3.7e-07 60.8 289 23.9
BolC8t50669H Brassica oleracea HOM05D006053 ORTHO05D008381 3.7e-07 60.8 289 23.9
Cpa.g.sc1.353 Carica papaya HOM05D006053 ORTHO05D008381 1.1e-06 59.3 169 29.6
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 1.4e-06 58.9 120 35.8
AL5G36480 Arabidopsis lyrata HOM05D006053 ORTHO05D008381 1.8e-06 58.5 144 29.2
A09p48230 Brassica napus HOM05D006053 ORTHO05D008381 1.8e-06 58.5 312 22.8
BraA09t40276Z Brassica rapa HOM05D006053 ORTHO05D008381 1.8e-06 58.5 312 22.8
Carub.0005s2199 Capsella rubella HOM05D006053 ORTHO05D008381 1.8e-06 58.5 238 23.9
PRCOL_00000761 Prasinoderma coloniale HOM05D005450 ORTHO05D006880 1.8e-06 58.5 254 25.6
unitig_0.g1413 Utricularia gibba HOM05D000069 ORTHO05D000060 1.8e-06 58.5 226 24.3
MELO3C013443.2 Cucumis melo HOM05D004650 ORTHO05D005715 2.4e-06 58.2 89 36.0
THA.LOC104824082 Tarenaya hassleriana HOM05D006053 ORTHO05D008381 2.4e-06 58.2 339 23.6
Zm00001eb266400 Zea mays HOM05D006053 ORTHO05D008381 2.4e-06 58.2 169 29.6
CsaV3_7G000160 Cucumis sativus L. HOM05D004650 ORTHO05D005715 5.3e-06 57.0 89 36.0
SEGI_39288 Sequoiadendron giganteum HOM05D006053 ORTHO05D008381 5.3e-06 57.0 216 24.5
Ca_19429_v3 Cicer arietinum L. HOM05D000142 ORTHO05D001253 6.9e-06 56.6 190 28.9
Actinidia02973 Actinidia chinensis HOM05D006053 ORTHO05D008381 9.0e-06 56.2 133 31.6
Aa31LG3G6050 Aethionema arabicum HOM05D000142 ORTHO05D001253 9.0e-06 56.2 215 26.0
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 9.0e-06 56.2 110 39.1
Pp3c14_1940 Physcomitrium patens HOM05D006053 ORTHO05D008381 9.0e-06 56.2 265 23.8


User provided reference genes

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