Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031641 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 2.9e-148 528.5 254 100.0
CSS0005448 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D006076 6.0e-130 467.6 235 96.2
Dinv34860 Davidia involucrata HOM05D002617 ORTHO05D006076 1.6e-85 320.1 252 67.9
Nitab4.5_0003461g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 1.7e-84 316.6 233 66.1
Peaxi162Scf00479g00121 Petunia axillaris HOM05D002617 ORTHO05D006076 2.5e-83 312.8 230 67.0
Nitab4.5_0004487g0050 Nicotiana tabacum HOM05D002617 ORTHO05D006076 5.5e-83 311.6 233 64.8
Manes.02G066000 Manihot esculenta HOM05D002617 ORTHO05D006076 1.6e-82 310.1 230 69.6
TAR629G1560 Trochodendron aralioides HOM05D002617 ORTHO05D006076 4.7e-82 308.5 236 65.3
Actinidia19593 Actinidia chinensis HOM05D002617 ORTHO05D006076 8.0e-82 307.8 233 67.8
Actinidia10244 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.4e-81 307.0 223 71.3
Solyc03g045060.3 Solanum lycopersicum HOM05D002617 ORTHO05D006076 3.0e-81 305.8 233 64.8
CiPaw.03G005500 Carya illinoinensis HOM05D002617 ORTHO05D006076 4.0e-81 305.4 233 64.8
Hma1.2p1_0550F.1_g177160 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 4.0e-81 305.4 234 67.9
Sopen03g009500 Solanum pennellii HOM05D002617 ORTHO05D000002 8.8e-81 304.3 233 64.4
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 1.5e-80 303.5 226 66.8
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 2.0e-80 303.1 226 66.8
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 2.6e-80 302.8 235 66.4
Rhsim07G0215800 Rhododendron simsii HOM05D002617 ORTHO05D006076 4.4e-80 302.0 239 66.1
Potri.017G111300 Populus trichocarpa HOM05D002617 ORTHO05D006076 5.7e-80 301.6 230 65.7
TWI74G0354 Tripterygium wilfordii HOM05D002617 ORTHO05D006076 7.5e-80 301.2 231 64.5
Lj4A130T19 Lonicera japonica HOM05D002617 ORTHO05D006076 9.7e-80 300.8 223 70.0
CAN.G153.18 Capsicum annuum HOM05D002617 ORTHO05D006076 2.2e-79 299.7 233 63.1
QL02p053118 Quercus lobata HOM05D002617 ORTHO05D006076 1.4e-78 297.0 230 65.7
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 2.4e-78 296.2 233 64.8
MSTRG.23826 Avicennia marina HOM05D002617 ORTHO05D006076 7.0e-78 294.7 232 62.5
Prupe.3G241000 Prunus persica HOM05D002617 ORTHO05D006076 2.0e-77 293.1 229 63.8
DCAR_026269 Daucus carota HOM05D002617 ORTHO05D006076 2.7e-77 292.7 232 64.7
MD17G1073100 Malus domestica HOM05D002617 ORTHO05D006076 4.5e-77 292.0 226 64.6
Atru.chr8.797 Acer truncatum HOM05D002617 ORTHO05D006076 1.7e-76 290.0 239 64.0
Cpa.g.sc179.38 Carica papaya HOM05D002617 ORTHO05D006076 5.0e-76 288.5 233 63.5
Cc07_g05010 Coffea canephora HOM05D002617 ORTHO05D006076 1.5e-75 287.0 231 63.2
RcHm_v2.0_Chr2g0163421 Rosa chinensis HOM05D002617 ORTHO05D006076 4.2e-75 285.4 229 63.3
MD09G1082600 Malus domestica HOM05D002617 ORTHO05D006076 5.5e-75 285.0 226 63.3
Oeu032874.2 Olea europaea HOM05D002617 ORTHO05D006076 9.4e-75 284.3 228 61.0
FAN14G4630 Fragaria x ananassa HOM05D002617 ORTHO05D006076 2.1e-74 283.1 226 64.2
FvH4_6g45480 Fragaria vesca HOM05D002617 ORTHO05D006076 3.6e-74 282.3 226 64.2
TAR371G0417 Trochodendron aralioides HOM05D002617 ORTHO05D006076 6.1e-74 281.6 236 61.0
Sabra04G0077200 Salix brachista HOM05D002617 ORTHO05D006076 1.8e-73 280.0 230 62.6
Hma1.2p1_0136F.1_g062020 Hydrangea macrophylla HOM05D002617 ORTHO05D006076 6.8e-73 278.1 233 64.4
Potri.004G104400 Populus trichocarpa HOM05D002617 ORTHO05D006076 2.2e-71 273.1 234 61.1
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 1.1e-70 270.8 234 62.8
Glyma.13G047700 Glycine max HOM05D002617 ORTHO05D006076 1.4e-70 270.4 245 60.0
Sabra17G0092600 Salix brachista HOM05D002617 ORTHO05D006076 2.4e-70 269.6 267 54.3
MELO3C022066.2 Cucumis melo HOM05D002617 ORTHO05D006076 4.1e-70 268.9 251 59.4
ECA232G1923 Erigeron canadensis HOM05D002617 ORTHO05D006076 4.1e-70 268.9 253 56.1
FAN02G4200 Fragaria x ananassa HOM05D002617 ORTHO05D006076 5.4e-70 268.5 261 56.3
Lj2g0025982 Lotus japonicus HOM05D002617 ORTHO05D006076 7.0e-70 268.1 243 60.1
ClCG11G005280 Citrullus lanatus HOM05D002617 ORTHO05D006076 2.7e-69 266.2 251 59.0
CsaV3_5G039050 Cucumis sativus L. HOM05D002617 ORTHO05D006076 3.5e-69 265.8 251 58.6
HanXRQChr14g0439661 Helianthus annuus HOM05D002617 ORTHO05D006076 7.7e-69 264.6 253 56.5
CANSAT64G0391 Cannabis sativa HOM05D002617 ORTHO05D006076 1.7e-68 263.5 226 60.6
Glyma.19G040800 Glycine max HOM05D002617 ORTHO05D006076 2.2e-68 263.1 245 60.0
Duzib177G0627 Durio zibethinus HOM05D002617 ORTHO05D006076 2.9e-68 262.7 245 58.8
Sed0011770 Sechium edule HOM05D002617 ORTHO05D006076 1.1e-67 260.8 232 60.8
AUR62029876 Chenopodium quinoa HOM05D002617 ORTHO05D006076 1.9e-67 260.0 223 60.1
GSVIVG01011977001 Vitis vinifera HOM05D002617 ORTHO05D006076 2.5e-67 259.6 234 58.5
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 9.4e-67 257.7 256 54.3
arahy.Tifrunner.gnm1.ann1.LH188B Arachis hypogaea HOM05D002617 ORTHO05D006076 1.6e-66 256.9 227 59.5
AUR62025837 Chenopodium quinoa HOM05D002617 ORTHO05D006076 2.7e-66 256.1 223 60.1
Eucgr.J01460 Eucalyptus grandis HOM05D002617 ORTHO05D006076 6.1e-66 255.0 228 55.7
Ca_26958_v3 Cicer arietinum L. HOM05D002617 ORTHO05D006076 1.4e-65 253.8 237 59.1
Thecc.04G140400 Theobroma cacao HOM05D002617 ORTHO05D006076 3.0e-65 252.7 228 58.3
VMungo0540G1549 Vigna mungo HOM05D002617 ORTHO05D006076 3.0e-65 252.7 242 57.4
Sc12g0007600 Simmondsia chinensis HOM05D002617 ORTHO05D006076 5.2e-65 251.9 235 59.1
arahy.Tifrunner.gnm1.ann1.B4TVCG Arachis hypogaea HOM05D002617 ORTHO05D006076 6.8e-65 251.5 228 58.3
Aqoxy3G00424 Aquilegia oxysepala HOM05D002617 ORTHO05D006076 8.8e-65 251.1 233 56.7
Gohir.D13G172300 Gossypium hirsutum HOM05D002617 ORTHO05D006076 2.0e-64 250.0 224 59.4
Gorai.013G188400 Gossypium raimondii HOM05D002617 ORTHO05D006076 2.0e-64 250.0 224 59.4
COL.COLO4_16207 Corchorus olitorius HOM05D002617 ORTHO05D006076 2.6e-64 249.6 219 60.3
unitig_736.g22255 Utricularia gibba HOM05D002617 ORTHO05D006076 4.4e-64 248.8 260 53.1
Gohir.A13G161700 Gossypium hirsutum HOM05D002617 ORTHO05D006076 9.8e-64 247.7 240 56.2
Phvul.L003037 Phaseolus vulgaris HOM05D002617 ORTHO05D006076 3.1e-62 242.7 251 56.2
Medtr6g016990 Medicago truncatula HOM05D002617 ORTHO05D006076 5.4e-62 241.9 226 58.8
SGA_v2.0_scaffold204G41654 Striga asiatica HOM05D002617 ORTHO05D006076 1.2e-61 240.7 235 54.9
Lalb_Chr02g0158361 Lupinus albus HOM05D002617 ORTHO05D006076 2.0e-61 240.0 228 58.8
Lalb_Chr21g0317971 Lupinus albus HOM05D002617 ORTHO05D006076 5.9e-61 238.4 231 58.4
HanXRQChr15g0489371 Helianthus annuus HOM05D002617 ORTHO05D006076 7.7e-61 238.0 213 58.7
Psat0s1160g0440 Pisum sativum HOM05D002617 ORTHO05D006076 7.7e-61 238.0 230 57.8
EL10Ac5g11460 Beta vulgaris HOM05D002617 ORTHO05D006076 2.3e-60 236.5 243 53.1
Duzib235G0774 Durio zibethinus HOM05D002617 ORTHO05D006076 2.3e-60 236.5 253 54.2
PGR042G0381 Punica granatum HOM05D002617 ORTHO05D006076 2.8e-58 229.6 236 56.4
ATR0598G067 Amborella trichopoda HOM05D002617 ORTHO05D006076 1.0e-57 227.6 216 57.4
Lsat_1_v5_gn_4_175880 Lactuca sativa HOM05D002617 ORTHO05D006076 1.0e-57 227.6 252 51.6
PSO017G2525 Papaver somniferum HOM05D002617 ORTHO05D006076 2.3e-57 226.5 217 53.9
PSO478G3319 Papaver somniferum HOM05D002617 ORTHO05D006076 4.0e-57 225.7 217 53.5
CDE03G0434 Ceratophyllum demersum HOM05D002617 ORTHO05D006076 1.2e-56 224.2 229 54.6
Aa31LG9G16990 Aethionema arabicum HOM05D002617 ORTHO05D006076 2.0e-56 223.4 234 53.4
TPR.G9686 Trifolium pratense HOM05D002617 ORTHO05D006076 2.0e-56 223.4 196 61.7
Oeu043861.1 Olea europaea HOM05D002617 ORTHO05D006076 1.3e-55 220.7 313 42.2
BcaB02g08001 Brassica carinata HOM05D002617 ORTHO05D006076 2.2e-55 219.9 234 52.1
THA.LOC104805556 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.2e-55 219.9 230 54.8
THA.LOC104822697 Tarenaya hassleriana HOM05D002617 ORTHO05D006076 2.2e-55 219.9 238 51.3
Carub.0002s1348 Capsella rubella HOM05D002617 ORTHO05D006076 1.8e-54 216.9 225 54.2
A07p19790 Brassica napus HOM05D002617 ORTHO05D006076 5.4e-54 215.3 234 51.7
C06p18260 Brassica napus HOM05D000054 ORTHO05D006076 5.4e-54 215.3 234 51.3
BolC6t37041H Brassica oleracea HOM05D002617 ORTHO05D006076 5.4e-54 215.3 234 51.3
BraA07t29680Z Brassica rapa HOM05D002617 ORTHO05D006076 5.4e-54 215.3 234 51.7
BcaC08g44397 Brassica carinata HOM05D002617 ORTHO05D006076 9.2e-54 214.5 234 51.3
AL2G25720 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 2.7e-53 213.0 176 62.5
DCAR_026709 Daucus carota HOM05D002617 ORTHO05D006076 3.5e-53 212.6 235 52.8
Sp7g03340 Schrenkiella parvula HOM05D002617 ORTHO05D006076 1.3e-52 210.7 193 56.5
EL10Ac6g14526 Beta vulgaris HOM05D002617 ORTHO05D006076 1.5e-51 207.2 224 53.6
vmacro04611 Vaccinium macrocarpon HOM05D002617 ORTHO05D006076 2.5e-51 206.5 176 63.6
AT1G67210 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 5.6e-51 205.3 195 55.9
AT5G38600 Arabidopsis thaliana HOM05D002617 ORTHO05D006076 7.3e-51 204.9 235 51.9
Carub.0007s3725 Capsella rubella HOM05D002617 ORTHO05D006076 7.3e-51 204.9 236 51.7
Thhalv10018682m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 7.3e-51 204.9 223 52.5
Thhalv10027714m.g Eutrema salsugineum HOM05D002617 ORTHO05D006076 2.8e-50 203.0 233 50.2
Lj3A1022T61 Lonicera japonica HOM05D002617 ORTHO05D006076 1.0e-49 201.1 221 52.0
CARHR214050 Cardamine hirsuta HOM05D002617 ORTHO05D006076 1.8e-49 200.3 233 51.1
AUR62002941 Chenopodium quinoa HOM05D002617 ORTHO05D006076 6.8e-49 198.4 218 50.9
Hund05776 Selenicereus undatus HOM05D002617 ORTHO05D006076 1.2e-48 197.6 189 56.1
AUR62007748 Chenopodium quinoa HOM05D002617 ORTHO05D006076 4.4e-48 195.7 204 53.9
HPP92_011591 Vanilla planifolia HOM05D002617 ORTHO05D006076 4.4e-48 195.7 227 50.2
AL7G51930 Arabidopsis lyrata HOM05D002617 ORTHO05D006076 5.8e-48 195.3 227 51.5
Os06g0495700 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D006076 9.8e-48 194.5 215 50.2
BcaB05g24247 Brassica carinata HOM05D002617 ORTHO05D006076 4.9e-47 192.2 177 57.6
Sc11g0002970 Simmondsia chinensis HOM05D002617 ORTHO05D006076 6.4e-47 191.8 182 55.5
Aa31LG2G3590 Aethionema arabicum HOM05D002617 ORTHO05D006076 2.4e-46 189.9 245 46.1
BcaC03g14816 Brassica carinata HOM05D002617 ORTHO05D006076 1.2e-45 187.6 183 53.6
BolC2t08421H Brassica oleracea HOM05D002617 ORTHO05D006076 1.2e-45 187.6 183 53.6
C02p22680 Brassica napus HOM05D002617 ORTHO05D006076 1.6e-45 187.2 184 53.3
BraA02t06470Z Brassica rapa HOM05D002617 ORTHO05D006076 1.6e-45 187.2 231 47.6
A02p14070 Brassica napus HOM05D002617 ORTHO05D006076 3.5e-45 186.0 177 54.8
Lsat_1_v5_gn_8_37540 Lactuca sativa HOM05D002617 ORTHO05D006076 4.6e-45 185.7 169 55.6
Zm00001eb182330 Zea mays HOM05D002617 ORTHO05D006076 7.8e-45 184.9 214 48.1
Ah.03g138020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 1.7e-44 183.7 221 47.5
CARHR059670 Cardamine hirsuta HOM05D002617 ORTHO05D006076 5.0e-44 182.2 174 56.9
Sp5g22140 Schrenkiella parvula HOM05D002617 ORTHO05D006076 2.5e-43 179.9 175 55.4
Dinv33922 Davidia involucrata HOM05D002617 ORTHO05D006076 6.8e-41 171.8 137 67.2
Mapoly0126s0021 Marchantia polymorpha HOM05D002617 ORTHO05D006076 7.5e-40 168.3 194 47.4
SMO005G0008 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.0e-36 157.9 211 45.5
SMO197G0066 Selaginella moellendorffii HOM05D002617 ORTHO05D006076 1.0e-36 157.9 167 51.5
FAN05G1346 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.9e-35 153.7 137 58.4
Actinidia29638 Actinidia chinensis HOM05D002617 ORTHO05D006076 1.1e-33 147.9 90 77.8
Actinidia13004 Actinidia chinensis HOM05D002617 ORTHO05D006076 4.9e-31 139.0 86 76.7
Glyma.19G043901 Glycine max HOM05D002617 ORTHO05D006076 3.2e-30 136.3 149 53.7
PGSC0003DMG400003361 Solanum tuberosum HOM05D002617 ORTHO05D006076 1.6e-29 134.0 119 57.1
CBR_g21963 Chara braunii HOM05D002617 ORTHO05D006076 1.3e-28 131.0 192 41.1
FAN09G0965 Fragaria x ananassa HOM05D002617 ORTHO05D006076 1.2e-26 124.4 84 72.6
SGA_v2.0_scaffold150G36614 Striga asiatica HOM05D002617 ORTHO05D006076 7.6e-24 115.2 150 48.0
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.1e-14 84.7 44 86.4
AagrBONN_evm.TU.Sc2ySwM_344.4970 Anthoceros agrestis HOM05D002617 ORTHO05D006076 2.4e-14 83.6 79 51.9
Ah.02g115020 Amaranthus hybridus HOM05D002617 ORTHO05D006076 5.3e-09 65.9 110 39.1


User provided reference genes

Program Settings