Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 2.0e-103 379.0 183 100.0
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.7e-79 298.9 171 81.3
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.0e-75 287.0 171 78.9
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.4e-75 286.6 172 79.1
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 4.0e-75 285.0 171 77.2
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 5.2e-75 284.6 200 72.0
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 8.9e-75 283.9 171 76.0
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 2.2e-73 279.3 171 74.3
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 2.9e-73 278.9 173 73.4
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 2.9e-73 278.9 181 71.8
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 3.7e-73 278.5 171 73.1
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 3.7e-73 278.5 171 75.4
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 4.9e-73 278.1 171 74.3
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 6.4e-73 277.7 171 74.9
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 2.4e-72 275.8 171 73.7
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 7.0e-72 274.2 171 73.1
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 7.0e-72 274.2 171 72.5
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 1.2e-71 273.5 182 69.2
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.2e-71 273.5 182 68.1
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.6e-71 273.1 171 73.1
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.6e-71 273.1 171 73.1
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 2.7e-71 272.3 171 73.7
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 3.5e-71 271.9 171 72.5
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 3.5e-71 271.9 171 71.3
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 3.5e-71 271.9 171 70.8
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 6.0e-71 271.2 182 69.2
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.3e-70 270.0 182 69.2
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.7e-70 269.6 171 71.3
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.7e-70 269.6 171 71.3
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.7e-70 269.6 171 70.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 3.9e-70 268.5 171 70.8
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 5.0e-70 268.1 171 70.8
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 6.6e-70 267.7 171 71.9
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 8.6e-70 267.3 182 67.6
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.9e-69 266.2 171 70.2
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.9e-69 266.2 171 70.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.5e-69 265.8 171 73.1
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 4.3e-69 265.0 182 67.6
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 5.6e-69 264.6 172 72.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.6e-69 264.6 182 67.0
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.6e-69 264.6 182 67.0
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 9.5e-69 263.8 171 67.8
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-68 263.5 182 68.7
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 1.6e-68 263.1 171 69.6
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.6e-68 263.1 171 71.3
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 2.1e-68 262.7 171 71.3
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 3.6e-68 261.9 171 68.4
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 6.2e-68 261.2 171 68.4
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 6.2e-68 261.2 171 68.4
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 6.2e-68 261.2 171 68.4
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 6.2e-68 261.2 173 71.7
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 6.2e-68 261.2 171 70.2
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 8.0e-68 260.8 182 64.3
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.1e-67 260.4 171 69.0
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.8e-67 259.6 171 67.8
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.8e-67 259.6 182 64.3
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 2.3e-67 259.2 173 68.8
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 3.1e-67 258.8 171 66.7
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 4.0e-67 258.5 171 67.3
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.0e-67 258.5 190 64.7
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 6.8e-67 257.7 171 67.8
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 8.9e-67 257.3 171 66.7
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 8.9e-67 257.3 171 65.5
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.2e-66 256.9 171 67.8
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.2e-66 256.9 171 67.8
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.2e-66 256.9 171 67.8
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-66 256.9 190 64.2
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 1.2e-66 256.9 171 69.6
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 1.5e-66 256.5 171 67.3
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 2.6e-66 255.8 182 63.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 4.4e-66 255.0 171 69.6
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 5.8e-66 254.6 171 66.1
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-65 253.4 171 66.1
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.3e-65 253.4 182 62.6
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 1.3e-65 253.4 171 66.1
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.3e-65 253.4 182 65.9
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 2.2e-65 252.7 171 64.9
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 2.9e-65 252.3 171 66.7
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 3.7e-65 251.9 173 64.7
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 8.3e-65 250.8 171 64.9
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 3.2e-64 248.8 171 64.3
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 3.2e-64 248.8 171 66.1
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 4.1e-64 248.4 171 63.7
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 2.0e-63 246.1 172 61.6
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 2.7e-63 245.7 189 61.4
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 3.5e-63 245.4 192 60.4
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 3.5e-63 245.4 151 73.5
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 6.0e-63 244.6 171 61.4
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.7e-62 243.0 143 77.6
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 5.0e-62 241.5 214 56.5
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 5.0e-62 241.5 220 52.3
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 8.6e-62 240.7 160 67.5
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.1e-61 240.4 207 56.0
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.5e-61 240.0 207 55.6
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.3e-61 238.8 171 62.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 7.3e-61 237.7 171 64.3
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 1.6e-60 236.5 226 54.0
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 6.2e-60 234.6 153 68.0
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.4e-59 233.4 206 55.3
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 4.4e-58 228.4 182 59.3
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.3e-57 226.9 171 66.7
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 4.9e-57 224.9 146 69.2
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 7.1e-56 221.1 171 59.1
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 2.1e-55 219.5 143 66.4
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 2.3e-54 216.1 145 66.9
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 5.1e-54 214.9 160 63.1
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 8.6e-54 214.2 171 56.7
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.5e-53 212.6 171 54.4
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 6.4e-49 198.0 119 80.7
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 1.1e-48 197.2 140 65.7
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 4.6e-47 191.8 133 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.9e-45 186.4 172 44.8
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.5e-45 186.0 171 53.2
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 8.1e-44 181.0 143 60.8
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 9.0e-43 177.6 172 44.2
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 7.6e-42 174.5 166 44.0
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 2.2e-41 172.9 115 66.1
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 2.9e-41 172.6 130 58.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 4.9e-41 171.8 166 43.4
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 4.2e-40 168.7 120 60.0
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 7.1e-40 167.9 115 67.8
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 4.6e-39 165.2 142 55.6
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 4.3e-37 158.7 132 50.8
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.5e-34 148.7 115 56.5
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 5.8e-34 148.3 115 56.5
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 9.9e-34 147.5 159 49.7
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.1e-32 144.1 103 63.1
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.1e-29 134.0 87 60.9
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 1.5e-29 133.7 115 51.3
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.6e-28 130.2 84 73.8
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.8e-27 126.7 145 40.7
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 9.0e-27 124.4 115 55.7
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 3.7e-20 102.4 77 66.2
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 6.9e-19 98.2 69 62.3
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 3.4e-18 95.9 57 68.4
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 1.7e-17 93.6 55 81.8
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 2.9e-17 92.8 58 74.1
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 3.8e-17 92.4 55 70.9
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.4e-16 90.5 50 88.0
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 1.9e-16 90.1 50 88.0
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 3.2e-16 89.4 50 86.0
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 7.1e-16 88.2 50 86.0
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 7.9e-15 84.7 73 52.1
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 2.3e-14 83.2 50 78.0
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 6.7e-14 81.6 63 57.1
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.5e-13 80.5 55 58.2
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 1.5e-13 80.5 50 72.0
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 1.5e-13 80.5 50 72.0
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 3.3e-13 79.3 50 76.0
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.6e-12 77.0 50 70.0
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 2.8e-12 76.3 64 56.2
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 4.8e-12 75.5 50 68.0
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 1.4e-11 73.9 54 59.3
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 3.1e-11 72.8 119 31.9
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.2e-10 70.9 48 70.8
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 4.5e-10 68.9 56 51.8
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.2e-09 66.6 55 56.4
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 6.5e-09 65.1 56 48.2
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.4e-08 63.9 53 54.7
TAR381G0540 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.4e-08 63.9 45 68.9
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 3.2e-08 62.8 55 56.4
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 2.1e-07 60.1 71 47.9
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 3.9e-06 55.8 36 55.6


User provided reference genes

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