Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031634 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 4.8e-51 204.1 99 100.0
CSS0009445 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 2.9e-40 168.3 110 80.0
Hund20115 Selenicereus undatus HOM05D004000 ORTHO05D004629 7.0e-18 94.0 46 91.3
Duzib213G0764 Durio zibethinus HOM05D004000 ORTHO05D004629 2.7e-17 92.0 72 61.1
Duzib268G1547 Durio zibethinus HOM05D004000 ORTHO05D004629 2.7e-17 92.0 56 78.6
Thecc.07G186500 Theobroma cacao HOM05D004000 ORTHO05D004629 2.7e-17 92.0 56 78.6
Dinv19580 Davidia involucrata HOM05D004000 ORTHO05D004629 1.0e-16 90.1 56 75.0
Dinv42470 Davidia involucrata HOM05D004000 ORTHO05D004629 1.0e-16 90.1 56 75.0
CSS0006140 Camellia sinensis var. sinensis HOM05D004000 ORTHO05D004629 1.3e-16 89.7 56 75.0
Sc10g0007870 Simmondsia chinensis HOM05D004000 ORTHO05D004629 1.3e-16 89.7 56 75.0
vmacro09768 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 3.0e-16 88.6 54 75.9
Ciclev10005712m.g Citrus clementina HOM05D004000 ORTHO05D004629 3.9e-16 88.2 56 76.8
Duzib187G0240 Durio zibethinus HOM05D004000 ORTHO05D004629 3.9e-16 88.2 56 76.8
MD05G1234900 Malus domestica HOM05D004000 ORTHO05D004629 3.9e-16 88.2 52 75.0
QL04p092275 Quercus lobata HOM05D004000 ORTHO05D004629 5.0e-16 87.8 47 80.9
ClCG09G022790 Citrullus lanatus HOM05D004000 ORTHO05D004629 6.6e-16 87.4 47 80.9
Actinidia37130 Actinidia chinensis HOM05D004000 ORTHO05D004629 1.1e-15 86.7 45 86.7
Lj2A12G40 Lonicera japonica HOM05D004000 ORTHO05D004629 1.1e-15 86.7 50 74.0
Nn8g41219 Nelumbo nucifera HOM05D004000 ORTHO05D004629 1.1e-15 86.7 56 71.4
Rhsim06G0243100 Rhododendron simsii HOM05D004000 ORTHO05D004629 1.1e-15 86.7 56 75.0
Eucgr.F01477 Eucalyptus grandis HOM05D004000 ORTHO05D004629 1.5e-15 86.3 56 71.4
TAR627G0782 Trochodendron aralioides HOM05D004000 ORTHO05D004629 1.5e-15 86.3 47 78.7
MELO3C012597.2 Cucumis melo HOM05D004000 ORTHO05D004629 1.9e-15 85.9 56 71.4
CsaV3_7G022990 Cucumis sativus L. HOM05D004000 ORTHO05D004629 1.9e-15 85.9 56 71.4
VMungo1080G1629 Vigna mungo HOM05D004000 ORTHO05D004629 1.9e-15 85.9 56 71.4
Nn2g15475 Nelumbo nucifera HOM05D004000 ORTHO05D004629 2.5e-15 85.5 56 69.6
Nn7g36133 Nelumbo nucifera HOM05D004000 ORTHO05D004629 2.5e-15 85.5 56 69.6
Rhsim04G0003200 Rhododendron simsii HOM05D004000 ORTHO05D004629 2.5e-15 85.5 52 75.0
Glyma.08G164900 Glycine max HOM05D004000 ORTHO05D004629 3.3e-15 85.1 56 69.6
Lalb_Chr20g0108471 Lupinus albus HOM05D004000 ORTHO05D004629 3.3e-15 85.1 56 67.9
Phvul.005G049350 Phaseolus vulgaris HOM05D004000 ORTHO05D004629 3.3e-15 85.1 56 69.6
Actinidia24665 Actinidia chinensis HOM05D004000 ORTHO05D004629 4.3e-15 84.7 56 69.6
HanXRQChr04g0125331 Helianthus annuus HOM05D004000 ORTHO05D004629 4.3e-15 84.7 62 61.3
Nitab4.5_0000029g0230 Nicotiana tabacum HOM05D004000 ORTHO05D004629 5.6e-15 84.3 47 80.9
QL04p091152 Quercus lobata HOM05D004000 ORTHO05D004629 5.6e-15 84.3 52 71.2
TAR629G3216 Trochodendron aralioides HOM05D004000 ORTHO05D004629 5.6e-15 84.3 56 69.6
Glyma.15G262200 Glycine max HOM05D004000 ORTHO05D004629 7.3e-15 84.0 56 67.9
Medtr2g064415 Medicago truncatula HOM05D004000 ORTHO05D004629 7.3e-15 84.0 48 72.9
PGR004G2637 Punica granatum HOM05D004000 ORTHO05D004629 7.3e-15 84.0 45 84.4
THA.LOC104810272 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 7.3e-15 84.0 52 71.2
vmacro11690 Vaccinium macrocarpon HOM05D004000 ORTHO05D004629 7.3e-15 84.0 56 73.2
GSVIVG01036747001 Vitis vinifera HOM05D004000 ORTHO05D004629 7.3e-15 84.0 56 69.6
Lj3g0014191 Lotus japonicus HOM05D004000 ORTHO05D004629 1.2e-14 83.2 56 67.9
Oeu034053.1 Olea europaea HOM05D004000 ORTHO05D004629 1.2e-14 83.2 45 80.0
Potri.008G083800 Populus trichocarpa HOM05D004000 ORTHO05D004629 1.2e-14 83.2 56 67.9
THA.LOC104816986 Tarenaya hassleriana HOM05D004000 ORTHO05D004629 1.2e-14 83.2 52 71.2
Actinidia25397 Actinidia chinensis HOM05D004000 ORTHO05D004629 1.6e-14 82.8 56 69.6
Ca_03197_v3 Cicer arietinum L. HOM05D004000 ORTHO05D004629 1.6e-14 82.8 48 72.9
RcHm_v2.0_Chr3g0465841 Rosa chinensis HOM05D001399 ORTHO05D012334 2.1e-14 82.4 66 57.6
TPR.G27463 Trifolium pratense HOM05D004000 ORTHO05D004629 2.1e-14 82.4 56 66.1
TAR627G0690 Trochodendron aralioides HOM05D004000 ORTHO05D004629 2.1e-14 82.4 56 67.9
Peaxi162Scf00452g00229 Petunia axillaris HOM05D004000 ORTHO05D004629 2.8e-14 82.0 47 78.7
Psat0s1441g0160 Pisum sativum HOM05D004000 ORTHO05D004629 2.8e-14 82.0 56 66.1
Prupe.4G131300 Prunus persica HOM05D004000 ORTHO05D004629 2.8e-14 82.0 45 77.8
unitig_61.g26121 Utricularia gibba HOM05D004000 ORTHO05D004629 2.8e-14 82.0 56 66.1
Zm00001eb194650 Zea mays HOM05D004000 ORTHO05D004629 2.8e-14 82.0 45 86.7
ATR0605G293 Amborella trichopoda HOM05D004000 ORTHO05D004629 3.6e-14 81.6 77 50.6
CDE05G1666 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 3.6e-14 81.6 56 67.9
arahy.Tifrunner.gnm1.ann1.U2QCB7 Arachis hypogaea HOM05D004000 ORTHO05D004629 4.7e-14 81.3 57 70.2
arahy.Tifrunner.gnm1.ann1.UQZ7YG Arachis hypogaea HOM05D004000 ORTHO05D004629 4.7e-14 81.3 57 70.2
Cc05_g16490 Coffea canephora HOM05D004000 ORTHO05D004629 4.7e-14 81.3 56 69.6
MSTRG.14568 Avicennia marina HOM05D004000 ORTHO05D004629 6.2e-14 80.9 56 67.9
EL10Ac2g03287 Beta vulgaris HOM05D004000 ORTHO05D004629 6.2e-14 80.9 51 68.6
Nitab4.5_0006109g0060 Nicotiana tabacum HOM05D004000 ORTHO05D004629 6.2e-14 80.9 56 69.6
RcHm_v2.0_Chr5g0024051 Rosa chinensis HOM05D004000 ORTHO05D004629 6.2e-14 80.9 53 66.0
Aa31LG10G40 Aethionema arabicum HOM05D004000 ORTHO05D004629 8.1e-14 80.5 47 74.5
Sed0027383 Sechium edule HOM05D004000 ORTHO05D004629 1.1e-13 80.1 56 66.1
CANSAT56G1070 Cannabis sativa HOM05D004000 ORTHO05D004629 1.4e-13 79.7 56 66.1
CARHR087290 Cardamine hirsuta HOM05D004000 ORTHO05D004629 1.4e-13 79.7 56 69.6
CDE05G0982 Ceratophyllum demersum HOM05D004000 ORTHO05D004629 1.4e-13 79.7 56 66.1
ECA236G3922 Erigeron canadensis HOM05D004000 ORTHO05D004629 1.4e-13 79.7 63 60.3
Sopen07g034800 Solanum pennellii HOM05D004000 ORTHO05D004629 1.4e-13 79.7 56 69.6
CiPaw.11G059500 Carya illinoinensis HOM05D004000 ORTHO05D004629 1.8e-13 79.3 52 65.4
TWI59G1464 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 1.8e-13 79.3 56 66.1
unitig_744.g24504 Utricularia gibba HOM05D004000 ORTHO05D004629 1.8e-13 79.3 56 66.1
FvH4_3g14590 Fragaria vesca HOM05D004000 ORTHO05D004629 2.3e-13 79.0 45 73.3
MSTRG.13084 Avicennia marina HOM05D004000 ORTHO05D004629 3.1e-13 78.6 45 75.6
Lalb_Chr01g0015521 Lupinus albus HOM05D004000 ORTHO05D004629 3.1e-13 78.6 56 64.3
Oeu044963.4 Olea europaea HOM05D004000 ORTHO05D004629 3.1e-13 78.6 56 69.6
SGA_v2.0_scaffold49G18199 Striga asiatica HOM05D004000 ORTHO05D004629 3.1e-13 78.6 56 64.3
A03p37780 Brassica napus HOM05D001323 ORTHO05D001223 4.0e-13 78.2 65 61.5
BraA03t12933Z Brassica rapa HOM05D001323 ORTHO05D001223 4.0e-13 78.2 65 61.5
Thhalv10021347m.g Eutrema salsugineum HOM05D004000 ORTHO05D004629 4.0e-13 78.2 56 69.6
SGA_v2.0_scaffold239G44016 Striga asiatica HOM05D004000 ORTHO05D004629 4.0e-13 78.2 56 64.3
SalBow1G7638 Salvia bowleyana HOM05D004000 ORTHO05D004629 5.2e-13 77.8 56 66.1
Solyc07g066650.4 Solanum lycopersicum HOM05D004000 ORTHO05D004629 5.2e-13 77.8 56 67.9
TWI38G0870 Tripterygium wilfordii HOM05D004000 ORTHO05D004629 6.8e-13 77.4 56 60.7
PSO339G1394 Papaver somniferum HOM05D004000 ORTHO05D004629 1.2e-12 76.6 74 52.7
PSO384G1790 Papaver somniferum HOM05D004000 ORTHO05D004629 1.2e-12 76.6 74 52.7
C03p45850 Brassica napus HOM05D001323 ORTHO05D001223 1.5e-12 76.3 64 60.9
BolC3t16860H Brassica oleracea HOM05D001323 ORTHO05D001223 1.5e-12 76.3 64 60.9
Sp3g10920 Schrenkiella parvula HOM05D004000 ORTHO05D004629 1.5e-12 76.3 56 67.9
BcaB04g18717 Brassica carinata HOM05D001323 ORTHO05D001223 2.6e-12 75.5 74 55.4
BcaC01g04031 Brassica carinata HOM05D001323 ORTHO05D001223 2.6e-12 75.5 74 55.4
Os06g0233400 Oryza sativa ssp. japonica HOM05D004000 ORTHO05D004629 2.6e-12 75.5 45 77.8
HPP92_020395 Vanilla planifolia HOM05D004000 ORTHO05D004629 2.6e-12 75.5 56 60.7
BcaC09g48261 Brassica carinata HOM05D004000 ORTHO05D004629 3.4e-12 75.1 52 69.2
A01p40750 Brassica napus HOM05D004000 ORTHO05D004629 3.4e-12 75.1 52 69.2
Migut.H01660 Erythranthe guttata HOM05D004000 ORTHO05D004629 3.4e-12 75.1 56 62.5
Manes.17G000700 Manihot esculenta HOM05D004000 ORTHO05D004629 3.4e-12 75.1 46 65.2
Ah.01g015680 Amaranthus hybridus HOM05D004000 ORTHO05D004629 4.4e-12 74.7 47 66.0
Zm00001eb279840 Zea mays HOM05D004000 ORTHO05D004629 5.8e-12 74.3 45 73.3
AL3G24440 Arabidopsis lyrata HOM05D004000 ORTHO05D004629 7.5e-12 73.9 53 69.8
Carub.0003s1212 Capsella rubella HOM05D004000 ORTHO05D004629 7.5e-12 73.9 53 67.9
AUR62040875 Chenopodium quinoa HOM05D004000 ORTHO05D004629 7.5e-12 73.9 64 54.7
BcaB06g25514 Brassica carinata HOM05D004000 ORTHO05D004629 9.9e-12 73.6 52 67.3
HanXRQChr13g0408851 Helianthus annuus HOM05D004000 ORTHO05D004629 9.9e-12 73.6 57 63.2
AT3G12760 Arabidopsis thaliana HOM05D004000 ORTHO05D004629 2.2e-11 72.4 53 67.9
BcaC05g29239 Brassica carinata HOM05D004000 ORTHO05D004629 2.2e-11 72.4 52 65.4
Gohir.A08G231700 Gossypium hirsutum HOM05D004000 ORTHO05D004629 2.2e-11 72.4 57 64.9
Gorai.004G268800 Gossypium raimondii HOM05D004000 ORTHO05D004629 2.2e-11 72.4 57 64.9
Mapoly0065s0055 Marchantia polymorpha HOM05D004000 ORTHO05D004629 3.7e-11 71.6 56 62.5
Aa31LG8G60 Aethionema arabicum HOM05D004000 ORTHO05D004629 6.4e-11 70.9 54 64.8
Atru.chr1.77 Acer truncatum HOM05D004000 ORTHO05D004629 8.3e-11 70.5 56 58.9
AagrBONN_evm.TU.Sc2ySwM_117.2611 Anthoceros agrestis HOM05D004000 ORTHO05D004629 8.3e-11 70.5 52 61.5
Gohir.D08G252100 Gossypium hirsutum HOM05D004000 ORTHO05D004629 8.3e-11 70.5 57 63.2
MD10G1211100 Malus domestica HOM05D004000 ORTHO05D004629 1.1e-10 70.1 60 56.7
BcaB04g21038 Brassica carinata HOM05D004000 ORTHO05D004629 1.4e-10 69.7 56 64.3
HanXRQChr13g0410981 Helianthus annuus HOM05D004000 ORTHO05D004629 2.4e-10 68.9 67 49.3
Aqoxy2G00201 Aquilegia oxysepala HOM05D004000 ORTHO05D004629 5.4e-10 67.8 57 54.4
SMO364G0004 Selaginella moellendorffii HOM05D004000 ORTHO05D004629 2.7e-09 65.5 53 60.4
ECA240G0236 Erigeron canadensis HOM05D004000 ORTHO05D004629 4.6e-09 64.7 54 57.4
Pp3c10_17770 Physcomitrium patens HOM05D004000 ORTHO05D004629 1.0e-08 63.5 53 54.7
Pp3c12_24690 Physcomitrium patens HOM05D004000 ORTHO05D004629 1.0e-08 63.5 53 52.8
BolC1t05181H Brassica oleracea HOM05D004000 ORTHO05D004629 1.6e-06 56.2 41 70.7
BraA01t04109Z Brassica rapa HOM05D004000 ORTHO05D004629 1.6e-06 56.2 48 60.4
C01p52380 Brassica napus HOM05D004000 ORTHO05D004629 2.8e-06 55.5 30 86.7
Peaxi162Scf00006g01617 Petunia axillaris HOM05D004000 ORTHO05D004629 6.2e-06 54.3 69 39.1


User provided reference genes

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