Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 2.4e-190 668.7 336 100.0
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 7.7e-133 477.6 344 74.7
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 2.6e-128 462.6 342 74.0
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 9.7e-128 460.7 348 73.3
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 1.3e-111 407.1 336 65.5
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 5.7e-104 381.7 344 62.5
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 5.4e-102 375.2 433 55.0
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 9.2e-94 347.8 341 59.8
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 2.7e-93 346.3 342 56.7
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 3.5e-93 345.9 342 56.7
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 2.3e-92 343.2 342 56.1
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 6.6e-92 341.7 348 56.9
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 1.1e-91 340.9 338 59.2
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 3.3e-91 339.3 339 57.5
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 4.3e-91 339.0 345 56.8
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 8.0e-90 334.7 355 56.9
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 1.8e-89 333.6 333 56.2
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 5.2e-89 332.0 338 57.1
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 6.8e-89 331.6 338 56.2
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 8.9e-89 331.3 348 54.3
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 5.8e-88 328.6 353 55.5
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 1.3e-87 327.4 347 55.6
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 1.4e-86 323.9 349 55.0
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 3.2e-86 322.8 334 56.9
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.4e-86 322.0 332 57.8
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.2e-85 320.9 339 54.3
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.2e-85 320.9 337 56.1
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.0e-84 317.8 332 57.5
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 3.0e-84 316.2 224 72.8
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 3.9e-84 315.8 347 53.3
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 7.3e-83 311.6 339 52.8
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.2e-82 310.8 340 53.5
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.6e-82 310.5 343 53.4
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 6.2e-82 308.5 340 52.6
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.1e-81 306.2 340 52.4
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 1.2e-80 304.3 340 52.9
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 4.6e-77 292.4 272 59.2
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 6.0e-77 292.0 363 50.7
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 3.9e-76 289.3 316 56.6
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 1.5e-75 287.3 321 55.1
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 2.5e-75 286.6 322 55.3
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 9.5e-75 284.6 336 51.2
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.6e-74 283.9 353 50.1
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.1e-73 281.2 337 50.4
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.2e-72 277.7 342 51.2
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 2.6e-72 276.6 334 49.4
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 9.9e-72 274.6 303 53.8
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 5.4e-70 268.9 359 48.7
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 5.4e-70 268.9 338 49.7
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 7.1e-70 268.5 274 56.6
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 3.5e-69 266.2 268 56.3
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.5e-67 260.8 271 55.7
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 3.3e-67 259.6 343 48.7
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 4.3e-67 259.2 245 58.8
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.1e-65 254.6 341 50.1
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 1.3e-63 247.7 301 52.5
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 2.2e-63 246.9 342 46.8
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 4.9e-63 245.7 346 45.7
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 5.4e-62 242.3 335 46.9
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 7.1e-62 241.9 350 44.9
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 2.1e-61 240.4 342 46.2
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 2.5e-59 233.4 261 51.7
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 3.3e-59 233.0 342 44.7
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 7.3e-59 231.9 365 44.1
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.6e-58 230.7 349 44.7
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 1.6e-58 230.7 213 61.0
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 2.1e-58 230.3 327 43.7
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 8.1e-58 228.4 314 50.0
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 1.8e-57 227.3 250 52.0
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 1.5e-56 224.2 343 44.0
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 9.9e-56 221.5 312 50.0
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 9.9e-56 221.5 234 53.0
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 1.3e-55 221.1 336 44.9
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 2.9e-55 219.9 342 45.0
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 1.9e-54 217.2 347 44.4
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 2.4e-54 216.9 332 43.7
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 7.1e-54 215.3 336 44.9
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.2e-53 214.5 332 43.4
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 4.6e-53 212.6 336 44.9
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 4.6e-53 212.6 346 41.6
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 1.0e-52 211.5 361 41.6
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 1.0e-52 211.5 348 43.4
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 2.3e-52 210.3 336 42.0
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 3.0e-52 209.9 308 45.8
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 5.1e-52 209.1 192 56.8
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 6.7e-52 208.8 314 44.9
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 8.7e-52 208.4 334 43.4
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 1.9e-51 207.2 333 41.4
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 2.5e-51 206.8 333 41.4
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 4.3e-51 206.1 342 42.4
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 7.4e-51 205.3 340 42.1
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 9.6e-51 204.9 347 40.3
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 9.6e-51 204.9 348 41.7
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.6e-50 204.1 347 42.4
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 4.8e-50 202.6 342 41.8
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 4.8e-50 202.6 267 49.4
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 8.1e-50 201.8 334 42.8
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 8.1e-50 201.8 267 47.9
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.8e-49 200.7 321 43.0
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 2.0e-48 197.2 317 42.9
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 4.5e-48 196.1 337 39.5
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 1.3e-47 194.5 337 41.5
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 2.2e-47 193.7 345 40.9
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 2.2e-47 193.7 315 41.9
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 4.9e-47 192.6 349 42.7
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 6.5e-47 192.2 323 42.7
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 8.4e-47 191.8 350 40.0
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.1e-46 191.4 327 40.4
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 1.1e-46 191.4 356 40.4
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 1.9e-46 190.7 345 40.0
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.5e-46 190.3 337 40.4
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 2.5e-46 190.3 277 47.3
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 5.5e-46 189.1 275 44.0
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 7.1e-46 188.7 268 45.5
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.2e-45 188.0 276 41.7
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 2.7e-45 186.8 336 40.2
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 4.6e-45 186.0 287 43.2
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 7.9e-45 185.3 275 43.6
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.0e-44 184.9 358 39.9
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 1.3e-44 184.5 279 44.1
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.3e-44 184.5 275 43.3
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.0e-44 183.3 358 39.9
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 6.7e-44 182.2 359 39.6
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.1e-43 181.4 336 37.2
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 1.3e-42 177.9 320 39.7
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 1.6e-42 177.6 321 39.6
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 2.1e-42 177.2 335 40.6
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 6.2e-42 175.6 316 39.2
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 1.8e-41 174.1 218 50.0
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 3.1e-41 173.3 282 41.5
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 4.0e-41 172.9 317 38.8
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 5.3e-41 172.6 355 37.2
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 3.4e-40 169.9 333 37.5
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.0e-39 168.3 208 48.1
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 2.5e-38 163.7 314 38.5
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 4.2e-38 162.9 217 47.5
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 7.1e-38 162.2 282 41.1
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 3.5e-37 159.8 325 36.3
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 7.9e-37 158.7 185 51.9
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 4.3e-35 152.9 233 45.1
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 5.3e-33 146.0 292 39.4
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 2.0e-32 144.1 142 59.2
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.2e-30 136.7 99 70.7
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 2.7e-29 133.7 324 35.8
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 2.3e-28 130.6 282 35.8
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.1e-27 128.3 303 34.7
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.5e-27 127.9 164 47.6
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 9.7e-27 125.2 232 39.2
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 2.0e-24 117.5 332 31.0
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 5.0e-23 112.8 131 55.0
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 5.0e-23 112.8 312 32.4
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 7.2e-22 109.0 203 39.9
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 2.3e-20 104.0 87 66.7
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 6.7e-20 102.4 105 60.0
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 9.7e-19 98.6 182 36.3
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 5.3e-17 92.8 168 38.1
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 3.2e-14 83.6 91 47.3
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 3.2e-14 83.6 91 47.3
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.0e-12 78.6 56 62.5
Pp3c25_6330 Physcomitrium patens HOM05D002346 ORTHO05D002452 1.7e-07 61.2 186 32.8
Glyma.09G071600 Glycine max HOM05D001047 ORTHO05D000768 2.9e-07 60.5 132 37.9
Glyma.15G179600 Glycine max HOM05D001047 ORTHO05D000768 2.9e-07 60.5 132 38.6
Ah.16g109020 Amaranthus hybridus HOM05D004643 ORTHO05D059934 1.1e-06 58.5 31 87.1
AagrBONN_evm.TU.Sc2ySwM_117.2255 Anthoceros agrestis HOM05D002346 ORTHO05D002452 2.5e-06 57.4 165 29.1
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 2.5e-06 57.4 54 51.9
ECA233G2759 Erigeron canadensis HOM05D002346 ORTHO05D002452 3.2e-06 57.0 144 31.9
arahy.Tifrunner.gnm1.ann1.W1F2QM Arachis hypogaea HOM05D001047 ORTHO05D000768 4.2e-06 56.6 130 36.9
Gohir.A08G246300 Gossypium hirsutum HOM05D001047 ORTHO05D000768 4.2e-06 56.6 144 32.6
Os03g0402800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 4.2e-06 56.6 142 32.4
Prupe.5G235300 Prunus persica HOM05D002346 ORTHO05D002452 4.2e-06 56.6 192 27.6
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 7.2e-06 55.8 176 27.8
GSVIVG01015042001 Vitis vinifera HOM05D001047 ORTHO05D000768 7.2e-06 55.8 171 29.2
SEGI_28730 Sequoiadendron giganteum HOM05D002346 ORTHO05D002452 9.4e-06 55.5 50 54.0


User provided reference genes

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