Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031612 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 3.7e-254 881.3 536 100.0
CSS0025992 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 2.8e-246 855.1 536 97.6
CSS0001606 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.6e-244 849.4 536 97.0
Dinv41471 Davidia involucrata HOM05D003337 ORTHO05D003808 1.4e-131 474.2 521 65.3
TAR383G0794 Trochodendron aralioides HOM05D003337 ORTHO05D003808 3.7e-97 359.8 533 54.8
TAR625G0257 Trochodendron aralioides HOM05D003337 ORTHO05D003808 3.2e-96 356.7 532 54.9
Dinv05003 Davidia involucrata HOM05D003337 ORTHO05D003808 1.2e-95 354.8 533 54.8
Nitab4.5_0002042g0010 Nicotiana tabacum HOM05D003337 ORTHO05D003808 1.7e-94 350.9 531 54.0
Aqoxy7G02409 Aquilegia oxysepala HOM05D003337 ORTHO05D003808 6.6e-94 349.0 533 54.0
CSS0009940 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 2.8e-92 343.6 585 41.0
Peaxi162Scf00136g02012 Petunia axillaris HOM05D003337 ORTHO05D003808 2.3e-91 340.5 531 52.9
Nitab4.5_0004664g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 2.0e-90 337.4 531 53.3
CSS0040129 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 4.4e-90 336.3 529 53.9
FAN24G1139 Fragaria x ananassa HOM05D003337 ORTHO05D003808 1.9e-88 330.9 531 52.7
PSO017G4016 Papaver somniferum HOM05D003337 ORTHO05D003808 4.1e-88 329.7 537 52.9
PSO170G2416 Papaver somniferum HOM05D003337 ORTHO05D003808 6.0e-87 325.9 537 52.7
Sabra06G0200600 Salix brachista HOM05D003337 ORTHO05D003808 6.0e-87 325.9 520 52.9
CiPaw.08G010200 Carya illinoinensis HOM05D003337 ORTHO05D003808 7.8e-87 325.5 531 51.8
Nn8g39563 Nelumbo nucifera HOM05D003337 ORTHO05D003808 7.8e-87 325.5 533 52.9
Cc08_g00460 Coffea canephora HOM05D003337 ORTHO05D003808 2.3e-86 323.9 534 51.9
RcHm_v2.0_Chr6g0297611 Rosa chinensis HOM05D003337 ORTHO05D003808 2.3e-86 323.9 531 51.8
CAN.G130.8 Capsicum annuum HOM05D003337 ORTHO05D003808 3.0e-86 323.6 530 51.7
FAN20G0291 Fragaria x ananassa HOM05D003337 ORTHO05D003808 3.0e-86 323.6 531 52.0
FAN27G2849 Fragaria x ananassa HOM05D003337 ORTHO05D003808 3.0e-86 323.6 531 52.0
Nn2g12124 Nelumbo nucifera HOM05D003337 ORTHO05D003808 3.0e-86 323.6 534 51.7
MD15G1127100 Malus domestica HOM05D003337 ORTHO05D003808 5.0e-86 322.8 530 52.3
FAN15G2120 Fragaria x ananassa HOM05D003337 ORTHO05D003808 1.9e-85 320.9 531 52.0
FvH4_2g28850 Fragaria vesca HOM05D003337 ORTHO05D003808 3.3e-85 320.1 531 52.4
Nitab4.5_0000165g0080 Nicotiana tabacum HOM05D003337 ORTHO05D003808 4.3e-85 319.7 530 51.7
ClCG05G016760 Citrullus lanatus HOM05D003337 ORTHO05D003808 9.5e-85 318.5 533 51.2
Haze_21497 Corylus avellana HOM05D003337 ORTHO05D003808 1.6e-84 317.8 531 52.2
Ciclev10007238m.g Citrus clementina HOM05D003337 ORTHO05D003808 2.1e-84 317.4 530 51.9
MBI14_g37827_MAGBIO Magnolia biondii HOM05D003337 ORTHO05D003808 2.1e-84 317.4 533 51.6
Eucgr.C01723 Eucalyptus grandis HOM05D003337 ORTHO05D003808 3.6e-84 316.6 531 47.6
QL02p021300 Quercus lobata HOM05D003337 ORTHO05D003808 4.7e-84 316.2 531 51.8
Duzib168G1956 Durio zibethinus HOM05D003337 ORTHO05D003808 1.4e-83 314.7 532 51.9
GSVIVG01015601001 Vitis vinifera HOM05D003337 ORTHO05D003808 2.3e-83 313.9 522 51.0
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 3.1e-83 313.5 535 52.3
Potri.006G256400 Populus trichocarpa HOM05D003337 ORTHO05D003808 5.2e-83 312.8 520 52.5
Manes.16G123500 Manihot esculenta HOM05D003337 ORTHO05D003808 8.9e-83 312.0 535 52.1
Atru.chr7.2458 Acer truncatum HOM05D003337 ORTHO05D003808 1.2e-82 311.6 527 51.0
CSS0014408 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.2e-82 311.6 529 51.2
Psat5g029560 Pisum sativum HOM05D003337 ORTHO05D003808 2.6e-82 310.5 534 50.4
CSS0019364 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 3.4e-82 310.1 529 51.0
Thecc.09G022400 Theobroma cacao HOM05D003337 ORTHO05D003808 3.4e-82 310.1 531 51.4
Phvul.009G091900 Phaseolus vulgaris HOM05D003337 ORTHO05D003808 4.4e-82 309.7 531 50.7
COL.COLO4_18879 Corchorus olitorius HOM05D003337 ORTHO05D003808 7.5e-82 308.9 531 51.2
GSVIVG01035878001 Vitis vinifera HOM05D003337 ORTHO05D003808 7.5e-82 308.9 533 50.7
Glyma.04G065500 Glycine max HOM05D003337 ORTHO05D003808 9.9e-82 308.5 531 50.5
Actinidia14594 Actinidia chinensis HOM05D003337 ORTHO05D003808 1.3e-81 308.1 534 51.1
Sed0024031 Sechium edule HOM05D003337 ORTHO05D003808 1.3e-81 308.1 520 52.3
Zm00001eb184600 Zea mays HOM05D003337 ORTHO05D003808 2.2e-81 307.4 517 49.3
MSTRG.26016 Avicennia marina HOM05D003337 ORTHO05D003808 4.9e-81 306.2 518 51.9
Manes.03G013300 Manihot esculenta HOM05D003337 ORTHO05D003808 1.9e-80 304.3 530 50.2
Nitab4.5_0001294g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 2.4e-80 303.9 554 49.3
Sed0015158 Sechium edule HOM05D003337 ORTHO05D003808 2.4e-80 303.9 522 51.5
Hma1.2p1_0243F.1_g101010 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 4.1e-80 303.1 520 52.3
Potri.018G025600 Populus trichocarpa HOM05D003337 ORTHO05D003808 5.4e-80 302.8 531 50.8
Prupe.1G482800 Prunus persica HOM05D003337 ORTHO05D003808 5.4e-80 302.8 529 51.2
EL10Ac2g04195 Beta vulgaris HOM05D003337 ORTHO05D003808 2.1e-79 300.8 516 50.2
Lj1g0009523 Lotus japonicus HOM05D003337 ORTHO05D003808 3.5e-79 300.1 531 50.5
VMungo1309G0140 Vigna mungo HOM05D003337 ORTHO05D003808 1.7e-78 297.7 531 50.1
ECA246G2127 Erigeron canadensis HOM05D003337 ORTHO05D003808 2.3e-78 297.4 529 50.3
Glyma.06G066900 Glycine max HOM05D003337 ORTHO05D003808 2.3e-78 297.4 533 49.7
Lalb_Chr23g0268451 Lupinus albus HOM05D003337 ORTHO05D003808 3.0e-78 297.0 531 50.7
CsaV3_3G046270 Cucumis sativus L. HOM05D003337 ORTHO05D003808 3.9e-78 296.6 533 50.3
TWI34G0528 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 3.9e-78 296.6 531 50.1
Gorai.009G059100 Gossypium raimondii HOM05D003337 ORTHO05D003808 1.1e-77 295.0 528 50.2
TWI32G1054 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 3.3e-77 293.5 524 51.1
arahy.Tifrunner.gnm1.ann1.C340QI Arachis hypogaea HOM05D003337 ORTHO05D003808 5.6e-77 292.7 528 49.6
MELO3C003713.2 Cucumis melo HOM05D003337 ORTHO05D003808 7.3e-77 292.4 533 50.1
Hund25887 Selenicereus undatus HOM05D003337 ORTHO05D003808 9.5e-77 292.0 537 48.4
Duzib187G1394 Durio zibethinus HOM05D003337 ORTHO05D003808 1.6e-76 291.2 523 50.3
arahy.Tifrunner.gnm1.ann1.EV8XFE Arachis hypogaea HOM05D003337 ORTHO05D003808 3.6e-76 290.0 528 49.4
Lalb_Chr11g0063671 Lupinus albus HOM05D003337 ORTHO05D003808 3.1e-75 287.0 529 49.9
Medtr3g106700 Medicago truncatula HOM05D003337 ORTHO05D003808 3.1e-75 287.0 534 49.1
Gohir.D05G058000 Gossypium hirsutum HOM05D003337 ORTHO05D003808 4.0e-75 286.6 528 49.6
AUR62031541 Chenopodium quinoa HOM05D003337 ORTHO05D003808 6.8e-75 285.8 534 49.3
Gohir.A05G055800 Gossypium hirsutum HOM05D003337 ORTHO05D003808 6.8e-75 285.8 531 49.3
Sabra18G0028200 Salix brachista HOM05D003337 ORTHO05D003808 2.0e-74 284.3 590 35.3
Aa31sc102G10 Aethionema arabicum HOM05D003337 ORTHO05D003808 2.6e-74 283.9 533 48.4
Rhsim02G0202500 Rhododendron simsii HOM05D003337 ORTHO05D003808 2.6e-74 283.9 532 49.1
Sc09g0010250 Simmondsia chinensis HOM05D003337 ORTHO05D003808 2.6e-74 283.9 535 48.2
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 7.6e-74 282.3 531 48.8
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 7.6e-74 282.3 531 48.8
HPP92_015261 Vanilla planifolia HOM05D003337 ORTHO05D003808 2.9e-73 280.4 518 46.5
PGR031G1540 Punica granatum HOM05D003337 ORTHO05D003808 3.8e-73 280.0 537 49.3
AUR62012417 Chenopodium quinoa HOM05D003337 ORTHO05D003808 4.9e-73 279.6 534 48.1
SHI18538 Sapria himalayana HOM05D003337 ORTHO05D003808 4.9e-73 279.6 525 50.5
TPR.G3117 Trifolium pratense HOM05D003337 ORTHO05D003808 1.1e-72 278.5 534 48.9
MD08G1156500 Malus domestica HOM05D003337 ORTHO05D003808 1.9e-72 277.7 524 49.2
HanXRQChr05g0134851 Helianthus annuus HOM05D003337 ORTHO05D003808 4.1e-72 276.6 536 48.3
Hma1.2p1_2800F.1_g328770 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 4.1e-72 276.6 574 36.1
SEGI_13524 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 1.2e-71 275.0 519 48.2
Lsat_1_v5_gn_5_30121 Lactuca sativa HOM05D003337 ORTHO05D003808 2.1e-71 274.2 531 47.8
vmacro11183 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 3.5e-71 273.5 592 44.1
Sopen06g008090 Solanum pennellii HOM05D003337 ORTHO05D003808 4.6e-71 273.1 522 49.0
Oeu053108.1 Olea europaea HOM05D003337 ORTHO05D003808 5.1e-70 269.6 536 48.7
SalBow4G0163 Salvia bowleyana HOM05D003337 ORTHO05D003808 1.1e-69 268.5 527 48.8
SGA_v2.0_scaffold64G21955 Striga asiatica HOM05D003337 ORTHO05D003808 2.4e-67 260.8 529 39.9
Carub.0004s0499 Capsella rubella HOM05D003337 ORTHO05D003808 5.2e-67 259.6 534 45.7
Mapoly0008s0250 Marchantia polymorpha HOM05D003337 ORTHO05D003808 1.5e-66 258.1 524 47.3
Pp3c2_25350 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.2e-65 254.2 528 47.0
Pp3c2_25380 Physcomitrium patens HOM05D003337 ORTHO05D003808 2.2e-65 254.2 528 47.0
Migut.A00028 Erythranthe guttata HOM05D003337 ORTHO05D003808 1.4e-64 251.5 523 47.4
Ah.16g104580 Amaranthus hybridus HOM05D003337 ORTHO05D003808 1.9e-64 251.1 536 47.2
Lj7C724G9 Lonicera japonica HOM05D003337 ORTHO05D003808 3.2e-64 250.4 527 47.4
AL4G16700 Arabidopsis lyrata HOM05D003337 ORTHO05D003808 4.6e-63 246.5 534 44.9
TAR636G2033 Trochodendron aralioides HOM05D003337 ORTHO05D003808 6.0e-63 246.1 287 50.5
CDE02G1979 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 7.8e-63 245.7 532 46.1
BcaB08g35177 Brassica carinata HOM05D003337 ORTHO05D003808 3.0e-62 243.8 517 46.0
Hma1.2p1_0497F.1_g166430 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 1.1e-61 241.9 457 38.7
Dinv18205 Davidia involucrata HOM05D003337 ORTHO05D003808 6.2e-60 236.1 303 47.9
AagrBONN_evm.TU.Sc2ySwM_344.2463 Anthoceros agrestis HOM05D003337 ORTHO05D003808 2.6e-58 230.7 540 44.6
Thecc.09G133400 Theobroma cacao HOM05D003337 ORTHO05D003808 3.4e-58 230.3 524 45.8
unitig_748.g8275 Utricularia gibba HOM05D003337 ORTHO05D003808 1.3e-57 228.4 536 43.8
CiPaw.07G224800 Carya illinoinensis HOM05D003337 ORTHO05D003808 1.7e-57 228.0 305 44.9
CARHR116200 Cardamine hirsuta HOM05D003337 ORTHO05D003808 1.4e-56 224.9 518 43.1
CBR_g20432 Chara braunii HOM05D003337 ORTHO05D003808 5.4e-56 223.0 537 44.3
Sp4g04460 Schrenkiella parvula HOM05D003337 ORTHO05D003808 1.2e-55 221.9 519 43.5
Thhalv10000009m.g Eutrema salsugineum HOM05D003337 ORTHO05D003808 2.1e-55 221.1 518 43.8
BraA09t40970Z Brassica rapa HOM05D003337 ORTHO05D003808 3.5e-55 220.3 517 44.1
BcaC07g40870 Brassica carinata HOM05D003337 ORTHO05D003808 7.9e-55 219.2 519 43.5
BcaC02g08354 Brassica carinata HOM05D003337 ORTHO05D003808 2.3e-54 217.6 519 43.7
C04p55320 Brassica napus HOM05D003337 ORTHO05D003808 2.3e-54 217.6 518 44.2
BolC4t27068H Brassica oleracea HOM05D003337 ORTHO05D003808 1.1e-53 215.3 523 44.0
A04p19680 Brassica napus HOM05D003337 ORTHO05D003808 1.5e-53 214.9 518 43.6
BraA04t17558Z Brassica rapa HOM05D003337 ORTHO05D003808 1.5e-53 214.9 518 43.6
Potri.006G065300 Populus trichocarpa HOM05D003337 ORTHO05D003808 4.3e-53 213.4 525 44.8
BolC8t51439H Brassica oleracea HOM05D003337 ORTHO05D003808 5.6e-53 213.0 519 43.0
SEGI_23839 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 7.4e-53 212.6 519 44.3
Gohir.A05G055900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 1.6e-52 211.5 286 45.5
C08p38690 Brassica napus HOM05D003337 ORTHO05D003808 2.1e-52 211.1 519 43.0
A09p55690 Brassica napus HOM05D003337 ORTHO05D003808 4.8e-52 209.9 517 43.3
ATR0739G172 Amborella trichopoda HOM05D003337 ORTHO05D003808 1.7e-49 201.4 528 43.9
BcaB06g28056 Brassica carinata HOM05D003337 ORTHO05D003808 6.4e-49 199.5 536 30.8
Pp3c2_25330 Physcomitrium patens HOM05D003337 ORTHO05D003808 9.3e-48 195.7 474 46.0
Oeu012290.1 Olea europaea HOM05D003337 ORTHO05D003808 1.2e-47 195.3 440 48.4
CDE05G2189 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 6.0e-47 193.0 380 53.2
Pp3c1_12560 Physcomitrium patens HOM05D003337 ORTHO05D003808 5.6e-45 186.4 471 44.8
Lalb_Chr08g0244191 Lupinus albus HOM05D003337 ORTHO05D003808 3.7e-44 183.7 239 46.4
AT2G25320 Arabidopsis thaliana HOM05D003337 ORTHO05D003808 9.0e-43 179.1 303 36.0
Cpa.g.sc217.15 Carica papaya HOM05D003337 ORTHO05D003808 1.9e-37 161.4 530 40.8
SMO144G0040 Selaginella moellendorffii HOM05D003337 ORTHO05D003808 4.5e-34 150.2 537 36.3
Actinidia15665 Actinidia chinensis HOM05D003337 ORTHO05D003808 2.9e-33 147.5 149 55.0
Ca_15750_v3 Cicer arietinum L. HOM05D003337 ORTHO05D003808 8.5e-33 146.0 153 54.9
SEGI_27956 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 7.2e-32 142.9 317 33.1
Eucgr.L02163 Eucalyptus grandis HOM05D003337 ORTHO05D003808 9.7e-29 132.5 145 51.0
Gorai.010G061000 Gossypium raimondii HOM05D003337 ORTHO05D003808 1.8e-27 128.3 318 29.2
Lalb_Chr08g0244201 Lupinus albus HOM05D003337 ORTHO05D003808 3.1e-27 127.5 139 51.8
Gohir.D06G052600 Gossypium hirsutum HOM05D003337 ORTHO05D003808 5.3e-27 126.7 318 28.9
Gohir.A06G053550 Gossypium hirsutum HOM05D003337 ORTHO05D003808 2.2e-25 121.3 318 29.2
Eucgr.L02898 Eucalyptus grandis HOM05D003337 ORTHO05D003808 5.0e-25 120.2 150 47.3
Os02g0613400 Oryza sativa ssp. japonica HOM05D003337 ORTHO05D003808 6.5e-25 119.8 235 60.0
Oeu060140.1 Olea europaea HOM05D003337 ORTHO05D003808 1.3e-17 95.5 244 34.8
COL.COLO4_35177 Corchorus olitorius HOM05D003337 ORTHO05D003808 4.7e-15 87.0 310 47.1
Eucgr.L02899 Eucalyptus grandis HOM05D003337 ORTHO05D003808 1.8e-14 85.1 79 51.9
SalBow2G2138 Salvia bowleyana HOM05D003337 ORTHO05D003808 2.2e-12 78.2 188 34.0
vmacro22595 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 4.1e-11 73.9 123 41.5
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 5.9e-10 70.1 88 45.5
vmacro15258 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 7.7e-10 69.7 445 28.8
MSTRG.11604 Avicennia marina HOM05D003337 ORTHO05D003808 1.0e-09 69.3 59 55.9
HPP92_010003 Vanilla planifolia HOM05D003337 ORTHO05D003808 2.2e-09 68.2 197 56.3
HPP92_010004 Vanilla planifolia HOM05D003337 ORTHO05D003808 1.1e-08 65.9 103 40.8


User provided reference genes

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