Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031610 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 2.0e-62 242.3 122 100.0
QL05p063633 Quercus lobata HOM05D003369 ORTHO05D004089 1.7e-50 202.6 111 91.9
GSVIVG01032663001 Vitis vinifera HOM05D003369 ORTHO05D004089 3.9e-50 201.4 111 90.1
CSS0036715 Camellia sinensis var. sinensis HOM05D003369 ORTHO05D004089 5.0e-50 201.1 111 89.2
Actinidia13643 Actinidia chinensis HOM05D003369 ORTHO05D004089 6.6e-50 200.7 111 89.2
CANSAT54G1399 Cannabis sativa HOM05D003369 ORTHO05D004089 1.1e-49 199.9 111 89.2
CiPaw.09G143000 Carya illinoinensis HOM05D003369 ORTHO05D004089 1.9e-49 199.1 111 89.2
Dinv34494 Davidia involucrata HOM05D003369 ORTHO05D004089 1.9e-49 199.1 111 89.2
Rhsim04G0219100 Rhododendron simsii HOM05D003369 ORTHO05D004089 1.9e-49 199.1 109 89.9
Sed0008109 Sechium edule HOM05D003369 ORTHO05D004089 1.9e-49 199.1 111 89.2
CsaV3_3G030590 Cucumis sativus L. HOM05D003369 ORTHO05D004089 2.5e-49 198.7 111 88.3
Rhsim03G0153200 Rhododendron simsii HOM05D003369 ORTHO05D004089 3.3e-49 198.4 109 89.9
TWI53G1724 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 3.3e-49 198.4 111 88.3
MELO3C022652.2 Cucumis melo HOM05D003369 ORTHO05D004089 4.3e-49 198.0 111 87.4
TWI09G0152 Tripterygium wilfordii HOM05D003369 ORTHO05D004089 5.6e-49 197.6 111 88.3
Ca_09969_v3 Cicer arietinum L. HOM05D003369 ORTHO05D004089 7.3e-49 197.2 111 87.4
CiPaw.10G110000 Carya illinoinensis HOM05D003369 ORTHO05D004089 9.5e-49 196.8 111 87.4
ClCG11G010900 Citrullus lanatus HOM05D003369 ORTHO05D004089 9.5e-49 196.8 111 88.3
Gohir.A05G277600 Gossypium hirsutum HOM05D003369 ORTHO05D004089 9.5e-49 196.8 111 87.4
Gohir.D05G279200 Gossypium hirsutum HOM05D003369 ORTHO05D004089 9.5e-49 196.8 111 87.4
Gorai.009G292700 Gossypium raimondii HOM05D003369 ORTHO05D004089 9.5e-49 196.8 111 87.4
TPR.G35277 Trifolium pratense HOM05D003369 ORTHO05D004089 1.2e-48 196.4 111 86.5
TAR633G0919 Trochodendron aralioides HOM05D003369 ORTHO05D004089 1.2e-48 196.4 111 88.3
vmacro06898 Vaccinium macrocarpon HOM05D003369 ORTHO05D004089 1.2e-48 196.4 120 84.2
Nitab4.5_0000171g0170 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.6e-48 196.1 111 85.6
Nitab4.5_0011372g0040 Nicotiana tabacum HOM05D003369 ORTHO05D004089 2.1e-48 195.7 111 85.6
COL.COLO4_19461 Corchorus olitorius HOM05D003369 ORTHO05D004089 2.8e-48 195.3 111 86.5
Eucgr.J00108 Eucalyptus grandis HOM05D003369 ORTHO05D004089 2.8e-48 195.3 111 87.4
Oeu018743.1 Olea europaea HOM05D003369 ORTHO05D004089 2.8e-48 195.3 111 86.5
Lsat_1_v5_gn_2_126361 Lactuca sativa HOM05D003369 ORTHO05D004089 3.6e-48 194.9 111 86.5
Manes.10G002000 Manihot esculenta HOM05D003369 ORTHO05D004089 3.6e-48 194.9 111 84.7
SalBow3G2694 Salvia bowleyana HOM05D003369 ORTHO05D004089 4.7e-48 194.5 109 87.2
Atru.chr12.204 Acer truncatum HOM05D003369 ORTHO05D004089 6.2e-48 194.1 111 84.7
Medtr6g086565 Medicago truncatula HOM05D003369 ORTHO05D004089 6.2e-48 194.1 111 86.5
Nn5g26838 Nelumbo nucifera HOM05D003369 ORTHO05D004089 6.2e-48 194.1 110 89.1
Lj5g0006652 Lotus japonicus HOM05D003369 ORTHO05D004089 8.0e-48 193.7 111 86.5
Sopen06g015200 Solanum pennellii HOM05D003369 ORTHO05D004089 8.0e-48 193.7 111 84.7
Migut.F00574 Erythranthe guttata HOM05D003369 ORTHO05D004089 1.1e-47 193.4 111 84.7
Nitab4.5_0000375g0250 Nicotiana tabacum HOM05D003369 ORTHO05D004089 1.1e-47 193.4 111 84.7
SGA_v2.0_scaffold327G48760 Striga asiatica HOM05D003369 ORTHO05D004089 1.1e-47 193.4 111 85.6
Sc05g0004490 Simmondsia chinensis HOM05D003369 ORTHO05D004089 1.4e-47 193.0 111 86.5
arahy.Tifrunner.gnm1.ann1.HI4H5F Arachis hypogaea HOM05D003369 ORTHO05D004089 1.8e-47 192.6 109 85.3
Cpa.g.sc19.46 Carica papaya HOM05D003369 ORTHO05D004089 1.8e-47 192.6 111 87.4
Duzib106G0164 Durio zibethinus HOM05D003369 ORTHO05D004089 1.8e-47 192.6 111 86.5
CAN.G203.55 Capsicum annuum HOM05D003369 ORTHO05D004089 2.3e-47 192.2 111 82.9
Peaxi162Scf00739g00425 Petunia axillaris HOM05D003369 ORTHO05D004089 2.3e-47 192.2 111 84.7
Psat4g220880 Pisum sativum HOM05D003369 ORTHO05D004089 2.3e-47 192.2 111 84.7
Solyc05g052200.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 2.3e-47 192.2 111 82.9
Sopen05g030740 Solanum pennellii HOM05D003369 ORTHO05D004089 2.3e-47 192.2 111 82.9
ECA238G1180 Erigeron canadensis HOM05D003369 ORTHO05D004089 4.0e-47 191.4 111 84.7
Lj8C53G16 Lonicera japonica HOM05D003369 ORTHO05D004089 4.0e-47 191.4 111 85.6
PSO017G0651 Papaver somniferum HOM05D003369 ORTHO05D004089 4.0e-47 191.4 111 86.5
PSO170G0385 Papaver somniferum HOM05D003369 ORTHO05D004089 4.0e-47 191.4 111 85.6
Sabra19G0074300 Salix brachista HOM05D003369 ORTHO05D004089 4.0e-47 191.4 108 87.0
arahy.Tifrunner.gnm1.ann1.ABG2GV Arachis hypogaea HOM05D003369 ORTHO05D004089 5.2e-47 191.0 109 84.4
Duzib114G1008 Durio zibethinus HOM05D003369 ORTHO05D004089 5.2e-47 191.0 109 86.2
PGR044G0140 Punica granatum HOM05D003369 ORTHO05D004089 6.8e-47 190.7 111 83.8
Ah.13g075100 Amaranthus hybridus HOM05D003369 ORTHO05D004089 8.9e-47 190.3 111 87.4
Phvul.010G077634 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 8.9e-47 190.3 111 84.7
Aqoxy3G00685 Aquilegia oxysepala HOM05D003369 ORTHO05D004089 1.2e-46 189.9 111 87.4
MSTRG.27258 Avicennia marina HOM05D003369 ORTHO05D004089 1.2e-46 189.9 111 84.7
Nn2g10283 Nelumbo nucifera HOM05D003369 ORTHO05D004089 1.2e-46 189.9 111 86.5
Glyma.20G219600 Glycine max HOM05D003369 ORTHO05D004089 2.0e-46 189.1 111 83.8
Sp4g23040 Schrenkiella parvula HOM05D003369 ORTHO05D004089 2.6e-46 188.7 111 85.6
Thecc.10G184000 Theobroma cacao HOM05D003369 ORTHO05D004089 2.6e-46 188.7 111 84.7
Gohir.D06G186800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 3.4e-46 188.3 111 84.7
Gorai.010G219100 Gossypium raimondii HOM05D003369 ORTHO05D004089 3.4e-46 188.3 111 84.7
MBI15_g39391_MAGBIO Magnolia biondii HOM05D003369 ORTHO05D004089 3.4e-46 188.3 111 85.6
EL10Ac3g06746 Beta vulgaris HOM05D003369 ORTHO05D004089 5.8e-46 187.6 111 85.6
CARHR135820 Cardamine hirsuta HOM05D003369 ORTHO05D004089 5.8e-46 187.6 111 83.8
Oeu063993.2 Olea europaea HOM05D003369 ORTHO05D004089 5.8e-46 187.6 109 85.3
Potri.013G090500 Populus trichocarpa HOM05D003369 ORTHO05D004089 5.8e-46 187.6 109 85.3
Potri.019G059200 Populus trichocarpa HOM05D003369 ORTHO05D004089 5.8e-46 187.6 109 83.5
THA.LOC104814068 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 5.8e-46 187.6 111 84.7
Lalb_Chr02g0149401 Lupinus albus HOM05D003369 ORTHO05D004089 7.5e-46 187.2 111 82.9
Manes.07G142600 Manihot esculenta HOM05D003369 ORTHO05D004089 7.5e-46 187.2 112 83.0
Ciclev10030740m.g Citrus clementina HOM05D003369 ORTHO05D004089 9.8e-46 186.8 111 81.1
VMungo1383G1217 Vigna mungo HOM05D003369 ORTHO05D004089 9.8e-46 186.8 111 84.7
BcaB01g03521 Brassica carinata HOM05D003369 ORTHO05D004089 1.3e-45 186.4 111 83.8
BcaC01g05384 Brassica carinata HOM05D003369 ORTHO05D004089 1.3e-45 186.4 111 83.8
A03p22890 Brassica napus HOM05D003369 ORTHO05D004089 1.3e-45 186.4 111 83.8
C03p27140 Brassica napus HOM05D003369 ORTHO05D004089 1.3e-45 186.4 111 83.8
BolC3t15095H Brassica oleracea HOM05D003369 ORTHO05D004089 1.3e-45 186.4 111 83.8
Glyma.09G252000 Glycine max HOM05D003369 ORTHO05D004089 1.3e-45 186.4 111 83.8
Glyma.18G240600 Glycine max HOM05D003369 ORTHO05D004089 1.3e-45 186.4 111 83.8
Phvul.008G055600 Phaseolus vulgaris HOM05D003369 ORTHO05D004089 1.3e-45 186.4 111 83.8
Gohir.A06G179800 Gossypium hirsutum HOM05D003369 ORTHO05D004089 1.7e-45 186.0 111 83.8
Psat0s4462g0120 Pisum sativum HOM05D003369 ORTHO05D004089 1.7e-45 186.0 111 82.0
Hund05383 Selenicereus undatus HOM05D003369 ORTHO05D004089 1.7e-45 186.0 111 83.8
Solyc06g048890.4 Solanum lycopersicum HOM05D003369 ORTHO05D004089 1.7e-45 186.0 115 80.9
unitig_88.g27820 Utricularia gibba HOM05D003369 ORTHO05D004089 1.7e-45 186.0 111 82.9
DCAR_005879 Daucus carota HOM05D003369 ORTHO05D004089 2.2e-45 185.7 111 82.9
Medtr1g078330 Medicago truncatula HOM05D003369 ORTHO05D004089 2.2e-45 185.7 111 83.8
Aa31LG3G1410 Aethionema arabicum HOM05D003369 ORTHO05D004089 2.9e-45 185.3 111 82.9
DCAR_007356 Daucus carota HOM05D003369 ORTHO05D004089 2.9e-45 185.3 111 82.0
HanXRQChr15g0493711 Helianthus annuus HOM05D003369 ORTHO05D004089 2.9e-45 185.3 108 82.4
Prupe.1G349800 Prunus persica HOM05D003369 ORTHO05D004089 2.9e-45 185.3 111 82.0
Lalb_Chr06g0168441 Lupinus albus HOM05D003369 ORTHO05D004089 3.7e-45 184.9 111 82.0
THA.LOC104824367 Tarenaya hassleriana HOM05D003369 ORTHO05D004089 3.7e-45 184.9 111 83.8
Carub.0004s2301 Capsella rubella HOM05D003369 ORTHO05D004089 4.9e-45 184.5 111 82.9
AL4G38590 Arabidopsis lyrata HOM05D003369 ORTHO05D004089 6.4e-45 184.1 111 82.9
AT2G40730 Arabidopsis thaliana HOM05D003369 ORTHO05D004089 6.4e-45 184.1 111 82.9
BcaC02g07330 Brassica carinata HOM05D003369 ORTHO05D004089 6.4e-45 184.1 111 82.9
A04p31100 Brassica napus HOM05D003369 ORTHO05D004089 6.4e-45 184.1 111 82.9
BraA03t11513Z Brassica rapa HOM05D003369 ORTHO05D004089 6.4e-45 184.1 111 82.9
BraA04t18565Z Brassica rapa HOM05D003369 ORTHO05D004089 6.4e-45 184.1 111 82.9
unitig_0.g2517 Utricularia gibba HOM05D003369 ORTHO05D004089 1.1e-44 183.3 111 82.0
AUR62042224 Chenopodium quinoa HOM05D003369 ORTHO05D004089 1.4e-44 183.0 111 83.8
HanXRQChr14g0460671 Helianthus annuus HOM05D003369 ORTHO05D004089 1.4e-44 183.0 111 80.2
BcaB06g29170 Brassica carinata HOM05D003369 ORTHO05D004089 2.4e-44 182.2 111 82.0
C04p68490 Brassica napus HOM05D003369 ORTHO05D004089 2.4e-44 182.2 111 82.0
Thhalv10016269m.g Eutrema salsugineum HOM05D003369 ORTHO05D004089 2.4e-44 182.2 111 81.1
AUR62037781 Chenopodium quinoa HOM05D003369 ORTHO05D004089 3.2e-44 181.8 111 83.8
ECA232G1960 Erigeron canadensis HOM05D003369 ORTHO05D004089 3.2e-44 181.8 108 81.5
RcHm_v2.0_Chr4g0447001 Rosa chinensis HOM05D003369 ORTHO05D004089 3.2e-44 181.8 111 82.0
BolC4t28349H Brassica oleracea HOM05D003369 ORTHO05D004089 4.1e-44 181.4 109 82.6
CDE07G0902 Ceratophyllum demersum HOM05D003369 ORTHO05D004089 1.2e-43 179.9 111 82.0
Lsat_1_v5_gn_9_60180 Lactuca sativa HOM05D003369 ORTHO05D004089 1.6e-43 179.5 108 80.6
FAN07G2686 Fragaria x ananassa HOM05D003369 ORTHO05D004089 2.7e-43 178.7 111 80.2
FAN17G2799 Fragaria x ananassa HOM05D003369 ORTHO05D004089 2.7e-43 178.7 111 80.2
FvH4_4g37220 Fragaria vesca HOM05D003369 ORTHO05D004089 3.5e-43 178.3 111 80.2
HPP92_018085 Vanilla planifolia HOM05D003369 ORTHO05D004089 4.6e-43 177.9 111 79.3
Haze_05900 Corylus avellana HOM05D003369 ORTHO05D004089 7.8e-43 177.2 155 62.6
ATR1127G027 Amborella trichopoda HOM05D003369 ORTHO05D004089 1.0e-42 176.8 111 79.3
Glyma.10G170400 Glycine max HOM05D003369 ORTHO05D004089 1.3e-42 176.4 111 79.3
MD00G1126900 Malus domestica HOM05D003369 ORTHO05D004089 5.1e-42 174.5 112 80.4
Mapoly0025s0051 Marchantia polymorpha HOM05D003369 ORTHO05D004089 5.1e-42 174.5 111 75.7
Os01g0819900 Oryza sativa ssp. japonica HOM05D003369 ORTHO05D004089 5.1e-42 174.5 111 79.3
MD13G1002600 Malus domestica HOM05D003369 ORTHO05D004089 2.5e-41 172.2 112 79.5
Pp3c3_22310 Physcomitrium patens HOM05D003369 ORTHO05D004089 2.5e-41 172.2 111 74.8
SMO199G0006 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 4.0e-39 164.9 111 71.2
SMO361G0532 Selaginella moellendorffii HOM05D003369 ORTHO05D004089 2.0e-38 162.5 111 70.3
AagrBONN_evm.TU.Sc2ySwM_117.1623 Anthoceros agrestis HOM05D003369 ORTHO05D004089 1.7e-34 149.4 111 65.8
CBR_g49707 Chara braunii HOM05D003369 ORTHO05D004089 3.0e-34 148.7 109 65.1
Nitab4.5_0003473g0020 Nicotiana tabacum HOM05D003369 ORTHO05D004089 5.1e-34 147.9 86 86.0
Mapoly0025s0052 Marchantia polymorpha HOM05D003369 ORTHO05D004089 1.9e-33 146.0 112 62.5
PGSC0003DMG400008777 Solanum tuberosum HOM05D003369 ORTHO05D004089 3.3e-33 145.2 88 84.1
SEGI_35831 Sequoiadendron giganteum HOM05D003369 ORTHO05D004089 6.4e-29 131.0 76 80.3
Cre13.g575300 Chlamydomonas reinhardtii HOM05D003369 ORTHO05D004089 2.8e-24 115.5 111 52.3
SHI28914 Sapria himalayana HOM05D003369 ORTHO05D004089 2.4e-23 112.5 115 57.4
MCO06G273 Micromonas commoda HOM05D003369 ORTHO05D004089 3.2e-20 102.1 113 47.8
PRCOL_00000010 Prasinoderma coloniale HOM05D003369 ORTHO05D004089 5.1e-18 94.7 116 45.7
Actinidia31631 Actinidia chinensis HOM05D003369 ORTHO05D004089 5.3e-15 84.7 46 82.6
C04p02180 Brassica napus HOM05D003369 ORTHO05D004089 1.5e-09 66.6 67 56.7
BolC4t21865H Brassica oleracea HOM05D003369 ORTHO05D004089 1.5e-09 66.6 67 56.7
TPR.G12571 Trifolium pratense HOM05D003369 ORTHO05D004089 2.0e-06 56.2 26 88.5
BcaC02g12730 Brassica carinata HOM05D003369 ORTHO05D004089 3.4e-06 55.5 36 72.2
MSTRG.8879 Avicennia marina HOM05D003369 ORTHO05D004089 4.5e-06 55.1 27 81.5


User provided reference genes

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