Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.7e-112 408.7 208 100.0
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 1.3e-111 406.4 208 99.5
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 1.2e-51 207.2 224 55.8
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 6.6e-50 201.4 223 58.7
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 1.9e-49 199.9 217 55.3
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 1.9e-49 199.9 223 56.1
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 9.8e-46 187.6 223 55.2
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 2.4e-44 183.0 224 50.4
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 7.0e-44 181.4 213 57.3
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 9.2e-44 181.0 220 53.2
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.1e-43 179.9 193 56.0
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 2.7e-43 179.5 189 57.7
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 4.6e-43 178.7 231 52.8
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 7.8e-43 177.9 228 51.8
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.7e-42 176.8 225 49.3
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 3.9e-42 175.6 210 55.7
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 5.1e-42 175.3 220 52.3
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 2.1e-40 169.9 220 50.5
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 4.7e-40 168.7 212 56.6
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 8.1e-40 167.9 220 49.5
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 1.4e-39 167.2 211 53.1
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 1.8e-39 166.8 218 49.1
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 3.1e-39 166.0 224 49.1
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 6.8e-39 164.9 227 48.9
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.2e-38 164.1 205 53.7
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 2.0e-38 163.3 211 53.6
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 3.4e-38 162.5 226 48.7
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 4.4e-38 162.2 223 47.5
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 7.5e-38 161.4 227 47.6
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 1.7e-37 160.2 228 48.7
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 4.9e-37 158.7 220 50.5
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 4.9e-37 158.7 209 51.7
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 8.3e-37 157.9 225 50.2
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 8.3e-37 157.9 217 49.8
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.9e-36 156.8 209 51.2
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 3.2e-36 156.0 210 49.5
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 5.4e-36 155.2 209 51.7
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 9.2e-36 154.5 224 46.9
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 1.2e-35 154.1 208 49.5
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 1.6e-35 153.7 147 60.5
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 1.6e-35 153.7 210 51.4
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 2.1e-35 153.3 224 47.3
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 3.5e-35 152.5 224 47.8
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 3.5e-35 152.5 211 48.8
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 4.6e-35 152.1 213 48.8
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 6.0e-35 151.8 222 47.7
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 7.8e-35 151.4 225 48.0
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 7.8e-35 151.4 225 48.0
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.0e-34 149.4 225 48.0
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 4.3e-33 145.6 220 48.2
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 7.3e-33 144.8 199 46.7
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.2e-32 144.1 210 45.7
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 1.6e-32 143.7 213 48.4
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 2.8e-32 142.9 221 43.4
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 3.6e-32 142.5 230 43.9
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 6.2e-32 141.7 220 47.7
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 1.1e-31 141.0 211 47.9
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 1.1e-31 141.0 211 47.9
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.4e-31 139.8 144 59.7
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 2.4e-31 139.8 208 48.1
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 3.1e-31 139.4 232 43.1
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 4.0e-31 139.0 224 43.8
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 4.0e-31 139.0 223 44.8
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 2.0e-30 136.7 236 44.5
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 5.8e-30 135.2 209 45.5
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 7.6e-30 134.8 233 42.5
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 1.3e-29 134.0 208 47.6
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 1.3e-29 134.0 208 47.6
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 1.9e-28 130.2 225 42.2
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 2.7e-27 126.3 205 44.4
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 3.5e-27 125.9 246 42.7
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 4.6e-27 125.6 135 59.3
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 7.8e-27 124.8 244 42.2
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.0e-26 124.4 231 40.3
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 1.3e-26 124.0 230 40.9
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 3.0e-26 122.9 217 43.3
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 8.7e-26 121.3 233 41.2
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.5e-25 120.6 207 46.4
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.9e-25 120.2 227 42.7
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.9e-25 120.2 227 42.7
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.5e-25 119.8 227 41.4
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 2.5e-25 119.8 216 45.8
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 3.3e-25 119.4 203 42.9
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 9.6e-25 117.9 223 42.6
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.2e-24 117.5 214 39.3
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.8e-24 116.3 203 42.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 6.2e-24 115.2 220 41.4
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 8.1e-24 114.8 212 38.7
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.1e-23 114.4 223 40.4
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 1.8e-23 113.6 215 40.9
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.1e-23 112.8 223 40.4
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 5.3e-23 112.1 211 41.7
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 6.9e-23 111.7 227 40.1
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 2.6e-22 109.8 219 38.4
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 3.4e-22 109.4 148 49.3
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 4.4e-22 109.0 145 49.0
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 5.8e-22 108.6 210 37.6
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 5.8e-22 108.6 214 39.7
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 5.8e-22 108.6 215 40.5
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 1.3e-21 107.5 199 41.7
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.2e-21 106.7 211 41.2
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 3.8e-21 105.9 146 50.0
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 3.8e-21 105.9 207 40.1
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 2.4e-20 103.2 209 40.7
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 6.0e-19 98.6 211 39.8
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 6.0e-19 98.6 207 37.7
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.0e-18 97.8 126 47.6
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.3e-18 97.4 228 39.0
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 2.3e-18 96.7 207 38.6
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 3.0e-18 96.3 234 38.9
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 1.9e-17 93.6 207 38.2
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 7.3e-17 91.7 140 47.9
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 1.6e-16 90.5 201 35.8
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.1e-16 90.1 227 37.0
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.1e-16 90.1 144 47.2
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 2.8e-16 89.7 218 33.5
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 3.6e-16 89.4 227 37.0
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 3.6e-16 89.4 218 37.6
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 6.2e-16 88.6 215 35.8
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 6.2e-16 88.6 215 35.8
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 6.2e-16 88.6 215 35.8
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 1.1e-15 87.8 121 49.6
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 3.1e-15 86.3 215 34.0
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 3.1e-15 86.3 215 34.0
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 3.1e-15 86.3 210 36.7
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 4.0e-15 85.9 218 34.4
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 6.9e-15 85.1 212 37.7
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 6.9e-15 85.1 141 47.5
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 1.5e-14 84.0 121 44.6
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 1.5e-14 84.0 121 43.8
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 1.5e-14 84.0 172 36.0
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 2.6e-14 83.2 157 38.9
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 3.4e-14 82.8 121 44.6
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 5.8e-14 82.0 238 32.8
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 5.8e-14 82.0 220 33.2
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 7.6e-14 81.6 143 46.2
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 7.6e-14 81.6 132 43.9
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 1.7e-13 80.5 227 35.2
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 1.7e-13 80.5 143 40.6
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 1.7e-13 80.5 218 33.9
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.2e-13 80.1 215 35.8
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 3.8e-13 79.3 121 42.1
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 3.8e-13 79.3 121 42.1
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 3.8e-13 79.3 121 42.1
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 3.8e-13 79.3 121 42.1
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 2.4e-12 76.6 222 35.6
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 2.4e-12 76.6 121 41.3
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 3.2e-12 76.3 159 37.7
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 3.2e-12 76.3 159 37.7
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 7.1e-12 75.1 158 38.0
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 1.2e-11 74.3 158 38.6
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.2e-11 74.3 148 37.8
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.6e-11 73.9 155 39.4
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 3.5e-11 72.8 217 34.1
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 6.0e-11 72.0 49 73.5
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 1.3e-10 70.9 88 48.9
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 2.3e-10 70.1 127 37.0
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 3.0e-10 69.7 103 44.7
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 8.7e-10 68.2 203 30.5
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.1e-09 67.8 214 36.0
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.5e-09 67.4 220 33.6
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.8e-08 63.2 68 52.9
Zm00001eb264720 Zea mays HOM05D036073 ORTHO05D004462 3.7e-08 62.8 201 31.3
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 1.4e-07 60.8 244 29.5
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 1.4e-07 60.8 65 52.3
Zm00001eb214280 Zea mays HOM05D004032 ORTHO05D004462 2.4e-07 60.1 42 71.4
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 3.1e-07 59.7 236 30.5
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 6.9e-07 58.5 47 63.8
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 6.9e-07 58.5 144 34.0
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 9.0e-07 58.2 39 71.8
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 9.0e-07 58.2 39 71.8
PSO170G3678 Papaver somniferum HOM05D007665 ORTHO05D008293 2.6e-06 56.6 78 44.9
PSO063G5967 Papaver somniferum HOM05D007665 ORTHO05D008293 5.8e-06 55.5 82 43.9
Zm00001eb020730 Zea mays HOM05D004032 ORTHO05D004462 5.8e-06 55.5 38 71.1
COL.COLO4_12250 Corchorus olitorius HOM05D001536 ORTHO05D001442 9.9e-06 54.7 53 47.2
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 9.9e-06 54.7 159 30.2
Zm00001eb137990 Zea mays HOM05D036073 ORTHO05D004462 9.9e-06 54.7 46 54.3


User provided reference genes

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