Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031603 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.8e-162 575.9 287 100.0
CSS0018310 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 9.5e-140 500.4 288 89.6
Actinidia04264 Actinidia chinensis HOM05D004232 ORTHO05D004909 1.8e-42 177.2 273 41.8
Rhsim01G0048600 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.0e-41 173.7 273 40.7
vmacro21873 Vaccinium macrocarpon HOM05D004232 ORTHO05D004909 2.6e-41 173.3 273 42.1
Dinv42900 Davidia involucrata HOM05D004232 ORTHO05D004909 4.5e-41 172.6 276 39.1
Dinv43201 Davidia involucrata HOM05D004232 ORTHO05D004909 4.5e-41 172.6 276 39.1
Peaxi162Scf00113g00410 Petunia axillaris HOM05D004232 ORTHO05D004909 1.3e-40 171.0 278 41.4
Rhsim01G0048900 Rhododendron simsii HOM05D004232 ORTHO05D004909 4.4e-36 156.0 273 39.2
Nitab4.5_0000059g0500 Nicotiana tabacum HOM05D004232 ORTHO05D004909 3.7e-35 152.9 278 37.8
PGSC0003DMG400023181 Solanum tuberosum HOM05D004232 ORTHO05D004909 2.4e-34 150.2 276 37.0
DCAR_019365 Daucus carota HOM05D004232 ORTHO05D004909 3.1e-34 149.8 280 35.4
MD02G1011700 Malus domestica HOM05D004232 ORTHO05D004909 4.1e-34 149.4 303 35.6
Nitab4.5_0000700g0080 Nicotiana tabacum HOM05D004232 ORTHO05D004909 4.1e-34 149.4 278 37.8
Sc08g0005080 Simmondsia chinensis HOM05D004232 ORTHO05D004909 5.3e-34 149.1 280 37.5
Cc06_g23430 Coffea canephora HOM05D004232 ORTHO05D004909 5.0e-32 142.5 279 35.5
Sopen02g003100 Solanum pennellii HOM05D004232 ORTHO05D004909 6.5e-32 142.1 287 35.2
Cfa020866 Carpinus fangiana HOM05D004232 ORTHO05D004909 8.5e-32 141.7 269 34.2
Lsat_1_v5_gn_8_77581 Lactuca sativa HOM05D004232 ORTHO05D004909 8.5e-32 141.7 275 35.3
MSTRG.26306 Avicennia marina HOM05D004232 ORTHO05D004909 1.5e-31 141.0 276 36.6
Solyc02g014460.4 Solanum lycopersicum HOM05D004232 ORTHO05D004909 1.9e-31 140.6 287 34.8
Cc06_g23400 Coffea canephora HOM05D004232 ORTHO05D004909 2.5e-31 140.2 279 35.5
CiPaw.15G171200 Carya illinoinensis HOM05D004232 ORTHO05D004909 4.2e-31 139.4 269 34.2
Migut.K00358 Erythranthe guttata HOM05D004232 ORTHO05D004909 4.2e-31 139.4 280 36.4
FAN28G1469 Fragaria x ananassa HOM05D004232 ORTHO05D004909 5.5e-31 139.0 289 36.0
FvH4_1g01460 Fragaria vesca HOM05D004232 ORTHO05D004909 7.2e-31 138.7 286 36.7
Haze_19292 Corylus avellana HOM05D004232 ORTHO05D004909 1.6e-30 137.5 270 33.0
FAN19G1911 Fragaria x ananassa HOM05D004232 ORTHO05D004909 1.6e-30 137.5 292 36.0
Dinv41413 Davidia involucrata HOM05D004232 ORTHO05D004909 2.1e-30 137.1 151 47.7
FAN26G2384 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.1e-30 137.1 286 36.0
RcHm_v2.0_Chr2g0086391 Rosa chinensis HOM05D004232 ORTHO05D004909 2.1e-30 137.1 284 35.6
SGA_v2.0_scaffold387G50524 Striga asiatica HOM05D004232 ORTHO05D004909 2.1e-30 137.1 272 35.7
MD15G1157400 Malus domestica HOM05D004232 ORTHO05D004909 3.6e-30 136.3 306 33.3
QL02p091766 Quercus lobata HOM05D004232 ORTHO05D004909 4.7e-30 136.0 275 36.4
Aqoxy7G03504 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 6.1e-30 135.6 269 34.9
CsaV3_1G028610 Cucumis sativus L. HOM05D004232 ORTHO05D004909 6.1e-30 135.6 316 32.3
TAR625G0697 Trochodendron aralioides HOM05D004232 ORTHO05D004909 6.1e-30 135.6 300 33.3
Lj9A711T51 Lonicera japonica HOM05D004232 ORTHO05D004909 8.0e-30 135.2 187 41.2
Manes.06G039700 Manihot esculenta HOM05D004232 ORTHO05D004909 8.0e-30 135.2 292 34.6
Duzib168G1849 Durio zibethinus HOM05D004232 ORTHO05D004909 5.7e-28 129.0 323 33.4
ClCG06G012120 Citrullus lanatus HOM05D004232 ORTHO05D004909 2.2e-27 127.1 307 30.6
Gorai.010G111300 Gossypium raimondii HOM05D004232 ORTHO05D004909 2.8e-27 126.7 305 35.1
Rhsim01G0048800 Rhododendron simsii HOM05D004232 ORTHO05D004909 2.8e-27 126.7 187 39.6
Thecc.09G036600 Theobroma cacao HOM05D004232 ORTHO05D004909 2.8e-27 126.7 317 33.4
Aqoxy7G03502 Aquilegia oxysepala HOM05D004232 ORTHO05D004909 6.3e-27 125.6 272 32.4
Hund21619 Selenicereus undatus HOM05D004232 ORTHO05D004909 8.3e-27 125.2 282 32.6
Gohir.A06G096400 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.1e-26 124.8 305 34.8
Gohir.D06G096600 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.1e-26 124.8 305 34.8
Sabra18G0095700 Salix brachista HOM05D004232 ORTHO05D004909 1.1e-26 124.8 287 33.1
Lsat_1_v5_gn_8_59400 Lactuca sativa HOM05D004232 ORTHO05D004909 1.8e-26 124.0 275 32.4
MELO3C010252.2 Cucumis melo HOM05D004232 ORTHO05D004909 3.1e-26 123.2 316 30.7
unitig_52.g17569 Utricularia gibba HOM05D004232 ORTHO05D004909 5.4e-26 122.5 276 33.3
THA.LOC104808932 Tarenaya hassleriana HOM05D004232 ORTHO05D004909 1.2e-25 121.3 308 32.8
Rhsim01G0048700 Rhododendron simsii HOM05D004232 ORTHO05D004909 1.6e-25 120.9 187 38.0
Gorai.010G111100 Gossypium raimondii HOM05D004232 ORTHO05D004909 7.7e-25 118.6 294 32.7
ECA236G3428 Erigeron canadensis HOM05D004232 ORTHO05D004909 1.0e-24 118.2 270 32.6
Potri.018G112500 Populus trichocarpa HOM05D004232 ORTHO05D004909 1.3e-24 117.9 287 31.4
Nn8g39758 Nelumbo nucifera HOM05D004232 ORTHO05D004909 1.7e-24 117.5 392 26.0
Sed0012168 Sechium edule HOM05D004232 ORTHO05D004909 2.3e-24 117.1 309 31.4
CSS0000460 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 2.9e-24 116.7 191 40.8
ECA236G0371 Erigeron canadensis HOM05D004232 ORTHO05D004909 2.9e-24 116.7 273 31.5
CSS0034823 Camellia sinensis var. sinensis HOM05D004232 ORTHO05D004909 1.5e-23 114.4 191 40.3
Thhalv10018400m.g Eutrema salsugineum HOM05D004232 ORTHO05D004909 1.9e-23 114.0 298 31.2
BolC9t55076H Brassica oleracea HOM05D004232 ORTHO05D004909 3.3e-23 113.2 267 33.3
Actinidia04270 Actinidia chinensis HOM05D004232 ORTHO05D004909 4.2e-23 112.8 147 41.5
arahy.Tifrunner.gnm1.ann1.TW5YT9 Arachis hypogaea HOM05D004232 ORTHO05D004909 9.5e-23 111.7 273 33.0
Ca_21603_v3 Cicer arietinum L. HOM05D004232 ORTHO05D004909 9.5e-23 111.7 273 31.5
Sp5g35040 Schrenkiella parvula HOM05D004232 ORTHO05D004909 9.5e-23 111.7 303 31.0
GSVIVG01001050001 Vitis vinifera HOM05D004232 ORTHO05D004909 9.5e-23 111.7 279 32.6
C09p21710 Brassica napus HOM05D004232 ORTHO05D004909 1.2e-22 111.3 267 33.0
Gohir.A06G096200 Gossypium hirsutum HOM05D004232 ORTHO05D004909 1.6e-22 110.9 292 31.8
Ah.12g062460 Amaranthus hybridus HOM05D004232 ORTHO05D004909 6.1e-22 109.0 274 31.8
AT1G80710 Arabidopsis thaliana HOM05D004232 ORTHO05D004909 6.1e-22 109.0 304 31.2
arahy.Tifrunner.gnm1.ann1.BI9JLD Arachis hypogaea HOM05D004232 ORTHO05D004909 6.1e-22 109.0 273 32.6
TWI63G0539 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 6.1e-22 109.0 267 34.5
BcaC04g22248 Brassica carinata HOM05D004232 ORTHO05D004909 1.0e-21 108.2 267 33.0
Lalb_Chr07g0179621 Lupinus albus HOM05D004232 ORTHO05D004909 1.4e-21 107.8 274 30.3
HanXRQChr05g0141511 Helianthus annuus HOM05D004232 ORTHO05D004909 5.2e-21 105.9 275 30.5
Ciclev10007957m.g Citrus clementina HOM05D004232 ORTHO05D004909 8.9e-21 105.1 308 28.2
A09p17420 Brassica napus HOM05D004232 ORTHO05D004909 1.5e-20 104.4 268 33.2
ATR0629G133 Amborella trichopoda HOM05D004232 ORTHO05D004909 2.0e-20 104.0 272 30.5
Eucgr.C00403 Eucalyptus grandis HOM05D004232 ORTHO05D004909 2.6e-20 103.6 166 36.7
Ah.06g190350 Amaranthus hybridus HOM05D004232 ORTHO05D001990 4.4e-20 102.8 283 31.4
CARHR073790 Cardamine hirsuta HOM05D004232 ORTHO05D004909 4.4e-20 102.8 289 32.2
Glyma.17G103900 Glycine max HOM05D004232 ORTHO05D004909 9.8e-20 101.7 275 30.5
Oeu051700.1 Olea europaea HOM05D004232 ORTHO05D004909 9.8e-20 101.7 279 31.5
HPP92_023808 Vanilla planifolia HOM05D004232 ORTHO05D004909 9.8e-20 101.7 271 30.6
TPR.G15784 Trifolium pratense HOM05D004232 ORTHO05D004909 1.7e-19 100.9 283 32.2
AL2G40720 Arabidopsis lyrata HOM05D004232 ORTHO05D004909 2.2e-19 100.5 301 30.6
BraA07t32003Z Brassica rapa HOM05D004232 ORTHO05D004909 2.8e-19 100.1 311 28.0
Glyma.13G156300 Glycine max HOM05D004232 ORTHO05D004909 3.7e-19 99.8 274 31.8
Nn2g12267 Nelumbo nucifera HOM05D004232 ORTHO05D004909 4.9e-19 99.4 410 25.4
BcaC08g47551 Brassica carinata HOM05D004232 ORTHO05D004909 6.3e-19 99.0 301 27.9
BolC6t40394H Brassica oleracea HOM05D004232 ORTHO05D004909 6.3e-19 99.0 301 27.9
PGR142G1232 Punica granatum HOM05D004232 ORTHO05D004909 6.3e-19 99.0 382 24.9
Medtr4g116900 Medicago truncatula HOM05D004232 ORTHO05D004909 1.1e-18 98.2 276 30.8
TWI34G2022 Tripterygium wilfordii HOM05D004232 ORTHO05D004909 1.1e-18 98.2 352 26.7
PSO063G1432 Papaver somniferum HOM05D004232 ORTHO05D004909 1.8e-18 97.4 276 30.4
Aa31LG1G2250 Aethionema arabicum HOM05D004232 ORTHO05D004909 2.4e-18 97.1 292 30.1
BcaC08g47552 Brassica carinata HOM05D004232 ORTHO05D004909 3.2e-18 96.7 292 28.8
BolC6t40395H Brassica oleracea HOM05D004232 ORTHO05D004909 3.2e-18 96.7 292 28.8
Carub.0002s2684 Capsella rubella HOM05D004232 ORTHO05D004909 5.4e-18 95.9 306 30.4
Glyma.13G156200 Glycine max HOM05D004232 ORTHO05D004909 5.4e-18 95.9 273 29.7
Gohir.D06G096401 Gossypium hirsutum HOM05D004232 ORTHO05D004909 5.4e-18 95.9 316 29.4
EL10Ac1g00573 Beta vulgaris HOM05D004232 ORTHO05D004909 9.2e-18 95.1 315 27.3
VMungo1215G2079 Vigna mungo HOM05D004232 ORTHO05D004909 4.5e-17 92.8 274 31.0
Lj4g0017422 Lotus japonicus HOM05D004232 ORTHO05D004909 5.9e-17 92.4 272 30.9
SEGI_24126 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 1.0e-16 91.7 273 26.4
ATR0629G116 Amborella trichopoda HOM05D004232 ORTHO05D004909 1.3e-16 91.3 272 29.8
Psat4g032960 Pisum sativum HOM05D004232 ORTHO05D004909 1.7e-16 90.9 282 30.1
FAN23G0432 Fragaria x ananassa HOM05D004232 ORTHO05D004909 2.3e-16 90.5 154 39.6
A07p44980 Brassica napus HOM05D004232 ORTHO05D004909 8.6e-16 88.6 312 27.2
Atru.chr7.187 Acer truncatum HOM05D004232 ORTHO05D004909 1.1e-15 88.2 330 26.7
Phvul.003G175900 Phaseolus vulgaris HOM05D004232 ORTHO05D004909 1.1e-15 88.2 275 29.5
CARHR073800 Cardamine hirsuta HOM05D004232 ORTHO05D004909 1.5e-15 87.8 274 29.6
Prupe.7G257900 Prunus persica HOM05D004232 ORTHO05D004909 1.5e-15 87.8 192 33.3
C06p53760 Brassica napus HOM05D004232 ORTHO05D004909 4.3e-15 86.3 308 26.6
COL.COLO4_18749 Corchorus olitorius HOM05D004232 ORTHO05D004909 1.2e-14 84.7 296 29.7
Medtr4g116910 Medicago truncatula HOM05D004232 ORTHO05D004909 6.1e-14 82.4 271 26.9
Cpa.g.sc46.107 Carica papaya HOM05D004232 ORTHO05D004909 1.0e-13 81.6 155 35.5
SEGI_07783 Sequoiadendron giganteum HOM05D004232 ORTHO05D004909 3.1e-13 80.1 272 26.5
AUR62000901 Chenopodium quinoa HOM05D004232 ORTHO05D004909 6.8e-13 79.0 305 25.9
TPR.G15793 Trifolium pratense HOM05D004232 ORTHO05D004909 1.5e-12 77.8 275 29.1
Migut.G00058 Erythranthe guttata HOM05D004232 ORTHO05D004909 4.4e-12 76.3 273 28.2
ECA234G1449 Erigeron canadensis HOM05D004232 ORTHO05D004909 5.8e-12 75.9 73 41.1
AUR62005074 Chenopodium quinoa HOM05D004232 ORTHO05D004909 7.5e-12 75.5 280 28.2
Nitab4.5_0000660g0030 Nicotiana tabacum HOM05D004232 ORTHO05D004909 7.5e-12 75.5 79 48.1
C02p46280 Brassica napus HOM05D000783 ORTHO05D000705 9.8e-12 75.1 79 45.6
Nitab4.5_0011109g0010 Nicotiana tabacum HOM05D004232 ORTHO05D004909 1.7e-11 74.3 83 44.6
COL.COLO4_18748 Corchorus olitorius HOM05D004232 ORTHO05D004909 2.2e-11 73.9 73 47.9
CANSAT11G0555 Cannabis sativa HOM05D004232 ORTHO05D004909 8.3e-11 72.0 74 45.9
HanXRQChr12g0386031 Helianthus annuus HOM05D004232 ORTHO05D004909 8.3e-11 72.0 83 39.8
Nitab4.5_0010824g0020 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.4e-10 70.5 85 41.2
COL.COLO4_17524 Corchorus olitorius HOM05D004232 ORTHO05D004909 9.2e-10 68.6 91 39.6
Nitab4.5_0008408g0040 Nicotiana tabacum HOM05D004232 ORTHO05D004909 2.7e-09 67.0 89 40.4
Peaxi162Scf00155g00514 Petunia axillaris HOM05D004232 ORTHO05D004909 2.3e-08 63.9 85 37.6
Zm00001eb028210 Zea mays HOM05D004232 ORTHO05D004909 5.0e-08 62.8 75 41.3
QL05p007856 Quercus lobata HOM05D004232 ORTHO05D004909 1.1e-07 61.6 273 26.7
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 5.6e-07 59.3 81 33.3
Glyma.17G103767 Glycine max HOM05D004232 ORTHO05D004909 2.8e-06 57.0 72 40.3
Os08g0282500 Oryza sativa ssp. japonica HOM05D004232 ORTHO05D004909 6.2e-06 55.8 75 38.7


User provided reference genes

Program Settings