Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031602 Camellia sinensis var. sinensis HOM05D006656 ORTHO05D008208 1.5e-89 332.8 167 100.0
Dinv29827 Davidia involucrata HOM05D006656 ORTHO05D008208 3.6e-75 285.0 167 83.8
Actinidia39917 Actinidia chinensis HOM05D006656 ORTHO05D008208 3.4e-73 278.5 157 86.6
Potri.010G068200 Populus trichocarpa HOM05D006656 ORTHO05D008208 2.2e-72 275.8 156 85.9
SalBow3G1837 Salvia bowleyana HOM05D006656 ORTHO05D008208 6.4e-72 274.2 164 84.1
QL06p020043 Quercus lobata HOM05D006656 ORTHO05D008208 1.4e-71 273.1 158 83.5
Eucgr.H02989 Eucalyptus grandis HOM05D006656 ORTHO05D008208 2.4e-71 272.3 163 81.0
Glyma.10G005200 Glycine max HOM05D006656 ORTHO05D008208 3.2e-71 271.9 165 81.8
Ciclev10006077m.g Citrus clementina HOM05D006656 ORTHO05D008208 9.3e-71 270.4 160 81.2
COL.COLO4_15934 Corchorus olitorius HOM05D006656 ORTHO05D008208 1.2e-70 270.0 158 81.6
Rhsim02G0042500 Rhododendron simsii HOM05D006656 ORTHO05D008208 1.2e-70 270.0 153 87.6
RcHm_v2.0_Chr4g0394701 Rosa chinensis HOM05D006656 ORTHO05D008208 1.6e-70 269.6 157 82.8
Gohir.A09G228200 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.6e-70 268.1 164 80.5
Medtr1g041795 Medicago truncatula HOM05D006656 ORTHO05D008208 7.8e-70 267.3 156 81.4
Sc25g0003620 Simmondsia chinensis HOM05D006656 ORTHO05D008208 1.0e-69 266.9 161 82.0
Gohir.D09G229300 Gossypium hirsutum HOM05D006656 ORTHO05D008208 1.7e-69 266.2 164 80.5
Gorai.006G252000 Gossypium raimondii HOM05D006656 ORTHO05D008208 1.7e-69 266.2 164 80.5
Thecc.04G260300 Theobroma cacao HOM05D006656 ORTHO05D008208 1.7e-69 266.2 164 79.3
arahy.Tifrunner.gnm1.ann1.CLZM2Q Arachis hypogaea HOM05D006656 ORTHO05D008208 2.3e-69 265.8 161 80.7
MD13G1218700 Malus domestica HOM05D006656 ORTHO05D008208 2.3e-69 265.8 158 79.7
Dinv27090 Davidia involucrata HOM05D006656 ORTHO05D008208 3.0e-69 265.4 160 81.9
Lj6g0027143 Lotus japonicus HOM05D006656 ORTHO05D008208 5.1e-69 264.6 159 80.5
Lalb_Chr03g0037311 Lupinus albus HOM05D006656 ORTHO05D008208 1.1e-68 263.5 163 81.0
MSTRG.4156 Avicennia marina HOM05D006656 ORTHO05D008208 1.9e-68 262.7 160 79.4
FvH4_4g04220 Fragaria vesca HOM05D006656 ORTHO05D008208 1.9e-68 262.7 157 81.5
Manes.13G093430 Manihot esculenta HOM05D006656 ORTHO05D008208 2.5e-68 262.3 156 82.7
Ca_12138_v3 Cicer arietinum L. HOM05D006656 ORTHO05D008208 5.6e-68 261.2 156 78.8
Phvul.007G275000 Phaseolus vulgaris HOM05D006656 ORTHO05D008208 9.6e-68 260.4 156 80.8
Cpa.g.sc44.21 Carica papaya HOM05D006656 ORTHO05D008208 2.1e-67 259.2 164 78.0
TPR.G25151 Trifolium pratense HOM05D006656 ORTHO05D008208 2.1e-67 259.2 156 80.8
ClCG05G004140 Citrullus lanatus HOM05D006656 ORTHO05D008208 3.6e-67 258.5 157 79.0
FAN12G3008 Fragaria x ananassa HOM05D006656 ORTHO05D008208 3.6e-67 258.5 157 79.6
Nn1g02903 Nelumbo nucifera HOM05D006656 ORTHO05D008208 3.6e-67 258.5 164 76.8
HanXRQChr01g0022881 Helianthus annuus HOM05D006656 ORTHO05D008208 6.2e-67 257.7 158 79.1
HanXRQChr04g0115371 Helianthus annuus HOM05D006656 ORTHO05D008208 6.2e-67 257.7 158 78.5
Sabra10G0038900 Salix brachista HOM05D006656 ORTHO05D008208 6.2e-67 257.7 146 87.0
Prupe.1G045500 Prunus persica HOM05D006656 ORTHO05D008208 1.8e-66 256.1 158 77.8
vmacro15465 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 2.4e-66 255.8 141 87.2
Sed0021014 Sechium edule HOM05D006656 ORTHO05D008208 4.0e-66 255.0 156 78.2
DCAR_030758 Daucus carota HOM05D000730 ORTHO05D008208 5.3e-66 254.6 150 80.0
CANSAT78G1635 Cannabis sativa HOM05D006656 ORTHO05D008208 6.9e-66 254.2 156 79.5
CiPaw.01G180600 Carya illinoinensis HOM05D006656 ORTHO05D008208 6.9e-66 254.2 158 77.8
CsaV3_3G011860 Cucumis sativus L. HOM05D006656 ORTHO05D008208 6.9e-66 254.2 161 77.0
THA.LOC104804764 Tarenaya hassleriana HOM05D006656 ORTHO05D008208 6.9e-66 254.2 166 76.5
PGR004G1080 Punica granatum HOM05D006656 ORTHO05D008208 1.5e-65 253.1 157 78.3
Migut.G00494 Erythranthe guttata HOM05D006656 ORTHO05D008208 2.0e-65 252.7 158 81.0
Peaxi162Scf00602g00515 Petunia axillaris HOM05D006656 ORTHO05D008208 2.6e-65 252.3 164 75.6
Nitab4.5_0001425g0100 Nicotiana tabacum HOM05D006656 ORTHO05D008208 3.4e-65 251.9 160 78.1
CAN.G220.47 Capsicum annuum HOM05D006656 ORTHO05D008208 7.6e-65 250.8 154 79.2
PSO210G7176 Papaver somniferum HOM05D006656 ORTHO05D008208 7.6e-65 250.8 155 76.8
MBI14_g30459_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 9.9e-65 250.4 157 78.3
PSO447G0273 Papaver somniferum HOM05D006656 ORTHO05D008208 9.9e-65 250.4 158 75.3
MBI07_g22362_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 1.3e-64 250.0 157 78.3
Solyc09g090430.3 Solanum lycopersicum HOM05D006656 ORTHO05D008208 1.3e-64 250.0 154 78.6
Sopen09g033350 Solanum pennellii HOM05D006656 ORTHO05D008208 1.3e-64 250.0 154 78.6
PGSC0003DMG400017160 Solanum tuberosum HOM05D006656 ORTHO05D008208 1.3e-64 250.0 154 79.2
TWI09G0269 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.3e-64 250.0 156 77.6
TWI09G1522 Tripterygium wilfordii HOM05D006656 ORTHO05D008208 1.3e-64 250.0 156 77.6
Nitab4.5_0013448g0010 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.7e-64 249.6 154 79.2
FAN17G2925 Fragaria x ananassa HOM05D006656 ORTHO05D008208 3.8e-64 248.4 159 79.2
Hund11920 Selenicereus undatus HOM05D006656 ORTHO05D008208 3.8e-64 248.4 161 73.3
VMungo0720G2665 Vigna mungo HOM05D006656 ORTHO05D008208 3.8e-64 248.4 146 82.9
arahy.Tifrunner.gnm1.ann1.DD5QG4 Arachis hypogaea HOM05D006656 ORTHO05D008208 4.9e-64 248.1 147 81.6
EL10Ac3g04969 Beta vulgaris HOM05D006656 ORTHO05D008208 4.9e-64 248.1 152 77.0
Hma1.2p1_0112F.1_g054500 Hydrangea macrophylla HOM05D006656 ORTHO05D008208 4.9e-64 248.1 161 75.2
Lsat_1_v5_gn_1_75161 Lactuca sativa HOM05D006656 ORTHO05D008208 8.4e-64 247.3 157 75.8
Aqoxy2G03715 Aquilegia oxysepala HOM05D006656 ORTHO05D008208 5.4e-63 244.6 157 73.9
arahy.Tifrunner.gnm1.ann1.C3VAXP Arachis hypogaea HOM05D006656 ORTHO05D008208 7.1e-63 244.2 146 81.5
Sp3g21170 Schrenkiella parvula HOM05D006656 ORTHO05D008208 9.3e-63 243.8 166 72.9
SpUn0047_0050 Schrenkiella parvula HOM05D006656 ORTHO05D008208 9.3e-63 243.8 166 72.9
Psat6g137160 Pisum sativum HOM05D006656 ORTHO05D008208 2.1e-62 242.7 146 78.1
BcaC06g35534 Brassica carinata HOM05D006656 ORTHO05D008208 3.5e-62 241.9 166 72.9
BolC7t41871H Brassica oleracea HOM05D006656 ORTHO05D008208 3.5e-62 241.9 166 72.9
BraA07t28683Z Brassica rapa HOM05D006656 ORTHO05D008208 3.5e-62 241.9 166 72.9
A07p08920 Brassica napus HOM05D006656 ORTHO05D008208 4.6e-62 241.5 166 72.3
C07p13760 Brassica napus HOM05D006656 ORTHO05D008208 4.6e-62 241.5 166 72.9
Thhalv10021585m.g Eutrema salsugineum HOM05D006656 ORTHO05D008208 6.0e-62 241.1 166 72.3
AL3G38180 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 7.9e-62 240.7 166 71.1
AT3G23490 Arabidopsis thaliana HOM05D006656 ORTHO05D008208 1.0e-61 240.4 165 71.5
Atru.chr4.1959 Acer truncatum HOM05D006656 ORTHO05D008208 2.3e-61 239.2 149 76.5
Ah.13g072350 Amaranthus hybridus HOM05D006656 ORTHO05D008208 2.3e-61 239.2 162 71.0
Carub.0003s2372 Capsella rubella HOM05D006656 ORTHO05D008208 3.0e-61 238.8 166 70.5
ECA248G3216 Erigeron canadensis HOM05D006656 ORTHO05D008208 3.0e-61 238.8 158 74.1
SGA_v2.0_scaffold67G22735 Striga asiatica HOM05D006656 ORTHO05D008208 3.0e-61 238.8 198 63.6
BcaB06g26499 Brassica carinata HOM05D006656 ORTHO05D008208 5.1e-61 238.0 160 74.4
HPP92_001387 Vanilla planifolia HOM05D006656 ORTHO05D008208 1.5e-60 236.5 150 76.7
AUR62015536 Chenopodium quinoa HOM05D006656 ORTHO05D008208 1.9e-60 236.1 188 64.4
AUR62002173 Chenopodium quinoa HOM05D006656 ORTHO05D008208 2.5e-60 235.7 152 75.0
ATR0736G110 Amborella trichopoda HOM05D006656 ORTHO05D008208 3.3e-60 235.3 154 71.4
Aa31LG8G9940 Aethionema arabicum HOM05D006656 ORTHO05D008208 1.6e-59 233.0 146 77.4
MBI07_g15427_MAGBIO Magnolia biondii HOM05D006656 ORTHO05D008208 8.1e-59 230.7 157 73.9
Lj3A676G52 Lonicera japonica HOM05D006656 ORTHO05D008208 3.4e-57 225.3 176 65.9
vmacro15466 Vaccinium macrocarpon HOM05D006656 ORTHO05D008208 3.4e-57 225.3 169 68.6
Os10g0471300 Oryza sativa ssp. japonica HOM05D006656 ORTHO05D008208 5.8e-57 224.6 153 69.3
CDE02G2281 Ceratophyllum demersum HOM05D006656 ORTHO05D008208 7.6e-57 224.2 149 71.8
Zm00001eb046120 Zea mays HOM05D006656 ORTHO05D008208 1.3e-56 223.4 160 69.4
Pp3c19_11440 Physcomitrium patens HOM05D006656 ORTHO05D008208 7.6e-49 197.6 159 60.4
Cc03_g05940 Coffea canephora HOM05D006656 ORTHO05D008208 5.1e-45 184.9 96 88.5
GSVIVG01027874001 Vitis vinifera HOM05D006656 ORTHO05D008208 8.7e-45 184.1 96 89.6
Cfa014756 Carpinus fangiana HOM05D006656 ORTHO05D008208 6.3e-43 177.9 116 75.9
Mapoly0080s0009 Marchantia polymorpha HOM05D006656 ORTHO05D008208 6.3e-43 177.9 150 58.0
Duzib151G0018 Durio zibethinus HOM05D006656 ORTHO05D008208 1.1e-42 177.2 122 72.1
MELO3C006399.2 Cucumis melo HOM05D000603 ORTHO05D003510 1.8e-42 176.4 149 61.7
AagrBONN_evm.TU.Sc2ySwM_344.2747 Anthoceros agrestis HOM05D006656 ORTHO05D008208 3.1e-42 175.6 162 54.9
Haze_11433 Corylus avellana HOM05D006656 ORTHO05D008208 8.5e-40 167.5 267 40.8
AL242U10020 Arabidopsis lyrata HOM05D006656 ORTHO05D008208 2.7e-38 162.5 116 69.8
HPP92_000029 Vanilla planifolia HOM05D006656 ORTHO05D008208 2.7e-38 162.5 166 56.0
CBR_g36666 Chara braunii HOM05D006656 ORTHO05D008208 5.7e-36 154.8 157 49.0
CBR_g71972 Chara braunii HOM05D006656 ORTHO05D008208 4.8e-35 151.8 154 51.3
PRCOL_00005673 Prasinoderma coloniale HOM05D006656 ORTHO05D008208 6.9e-34 147.9 154 49.4
SMO271G0046 Selaginella moellendorffii HOM05D006656 ORTHO05D008208 2.0e-28 129.8 140 46.4
arahy.Tifrunner.gnm1.ann1.USJ12Z Arachis hypogaea HOM05D006656 ORTHO05D008208 6.3e-27 124.8 83 73.5
Nitab4.5_0000014g0170 Nicotiana tabacum HOM05D006656 ORTHO05D008208 1.3e-19 100.5 76 67.1
Gohir.A02G041301 Gossypium hirsutum HOM05D006656 ORTHO05D008208 4.8e-19 98.6 64 71.9
BcaB02g10054 Brassica carinata HOM05D006656 ORTHO05D008208 3.2e-15 85.9 64 65.6
AagrBONN_evm.TU.Sc2ySwM_344.2745 Anthoceros agrestis HOM05D006656 ORTHO05D008208 5.5e-15 85.1 88 50.0
BcaB06g27105 Brassica carinata HOM05D006656 ORTHO05D008208 8.0e-14 81.3 49 73.5
BolC2t11169H Brassica oleracea HOM05D006656 ORTHO05D008208 2.3e-13 79.7 55 70.9
BcaC09g51699 Brassica carinata HOM05D006656 ORTHO05D008208 5.2e-13 78.6 45 80.0
MCO04G243 Micromonas commoda HOM05D006656 ORTHO05D008208 4.8e-11 72.0 135 32.6
C05p47480 Brassica napus HOM05D006656 ORTHO05D008208 5.3e-10 68.6 37 86.5
C03p47720 Brassica napus HOM05D006656 ORTHO05D008208 2.7e-09 66.2 37 83.8
HPP92_027915 Vanilla planifolia HOM05D003501 ORTHO05D004388 1.7e-08 63.5 64 57.8


User provided reference genes

Program Settings