Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031567 Camellia sinensis var. sinensis HOM05D006270 ORTHO05D007755 2.5e-125 452.2 245 100.0
Dinv03143 Davidia involucrata HOM05D006270 ORTHO05D007755 1.4e-54 217.2 233 54.1
Actinidia23030 Actinidia chinensis HOM05D006270 ORTHO05D007755 3.4e-53 212.6 220 60.5
Rhsim12G0005700 Rhododendron simsii HOM05D006270 ORTHO05D007755 2.3e-49 199.9 231 55.0
GSVIVG01026015001 Vitis vinifera HOM05D006270 ORTHO05D007755 2.6e-45 186.4 180 58.3
Sc23g0001640 Simmondsia chinensis HOM05D006270 ORTHO05D007755 3.4e-45 186.0 130 73.8
vmacro00974 Vaccinium macrocarpon HOM05D006270 ORTHO05D007755 4.4e-45 185.7 236 51.7
Nitab4.5_0001579g0030 Nicotiana tabacum HOM05D006270 ORTHO05D007755 2.2e-44 183.3 187 56.7
Manes.08G135800 Manihot esculenta HOM05D006270 ORTHO05D007755 4.9e-44 182.2 217 50.2
PGSC0003DMG400014297 Solanum tuberosum HOM05D006270 ORTHO05D007755 8.3e-44 181.4 169 60.4
Cc10_g11640 Coffea canephora HOM05D006270 ORTHO05D007755 3.2e-43 179.5 235 48.9
QL09p054318 Quercus lobata HOM05D006270 ORTHO05D007755 3.5e-42 176.0 154 63.0
Nitab4.5_0000167g0160 Nicotiana tabacum HOM05D006270 ORTHO05D007755 4.6e-42 175.6 185 55.1
QL09p054436 Quercus lobata HOM05D006270 ORTHO05D007755 7.8e-42 174.9 154 63.0
Lj3g0009409 Lotus japonicus HOM05D006270 ORTHO05D007755 1.3e-41 174.1 155 58.7
TAR628G1531 Trochodendron aralioides HOM05D006270 ORTHO05D007755 1.7e-41 173.7 129 70.5
Sopen03g004530 Solanum pennellii HOM05D006270 ORTHO05D007755 2.3e-41 173.3 169 58.0
ECA232G4580 Erigeron canadensis HOM05D006270 ORTHO05D007755 3.0e-41 172.9 217 46.5
Haze_18335 Corylus avellana HOM05D006270 ORTHO05D007755 8.6e-41 171.4 129 68.2
Potri.005G054600 Populus trichocarpa HOM05D006270 ORTHO05D007755 1.9e-40 170.2 227 46.7
Solyc03g025710.3 Solanum lycopersicum HOM05D006270 ORTHO05D007755 1.9e-40 170.2 176 55.7
arahy.Tifrunner.gnm1.ann1.WW5SAZ Arachis hypogaea HOM05D006270 ORTHO05D007755 2.5e-40 169.9 160 58.1
Glyma.08G240100 Glycine max HOM05D006270 ORTHO05D007755 2.5e-40 169.9 147 60.5
Duzib205G0009 Durio zibethinus HOM05D006270 ORTHO05D007755 4.3e-40 169.1 201 49.8
FAN10G3159 Fragaria x ananassa HOM05D006270 ORTHO05D007755 4.3e-40 169.1 173 55.5
Cfa017859 Carpinus fangiana HOM05D006270 ORTHO05D007755 7.3e-40 168.3 129 66.7
Glyma.12G002000 Glycine max HOM05D006270 ORTHO05D007755 7.3e-40 168.3 147 59.2
Prupe.2G311100 Prunus persica HOM05D006270 ORTHO05D007755 7.3e-40 168.3 132 65.9
Atru.chr13.2329 Acer truncatum HOM05D006270 ORTHO05D007755 1.2e-39 167.5 126 65.9
CAN.G307.5 Capsicum annuum HOM05D006270 ORTHO05D007755 1.6e-39 167.2 164 58.5
PGR102G0747 Punica granatum HOM05D006270 ORTHO05D007755 1.6e-39 167.2 150 63.3
VMungo1127G1589 Vigna mungo HOM05D006270 ORTHO05D007755 1.6e-39 167.2 163 53.4
arahy.Tifrunner.gnm1.ann1.3FR1H5 Arachis hypogaea HOM05D006270 ORTHO05D007755 2.1e-39 166.8 160 57.5
PSO782G5577 Papaver somniferum HOM05D006270 ORTHO05D007755 3.6e-39 166.0 139 62.6
Lsat_1_v5_gn_0_7900 Lactuca sativa HOM05D006270 ORTHO05D007755 4.7e-39 165.6 130 67.7
Phvul.011G002300 Phaseolus vulgaris HOM05D006270 ORTHO05D007755 4.7e-39 165.6 140 59.3
HanXRQChr05g0147941 Helianthus annuus HOM05D006270 ORTHO05D007755 6.2e-39 165.2 135 63.7
TWI59G0231 Tripterygium wilfordii HOM05D006270 ORTHO05D007755 6.2e-39 165.2 142 60.6
Oeu032990.1 Olea europaea HOM05D006270 ORTHO05D007755 8.0e-39 164.9 122 71.3
RcHm_v2.0_Chr1g0380911 Rosa chinensis HOM05D006270 ORTHO05D007755 8.0e-39 164.9 127 65.4
FAN10G0687 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.4e-38 164.1 148 60.1
FAN01G1506 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.8e-38 163.7 203 48.8
FAN03G2743 Fragaria x ananassa HOM05D006270 ORTHO05D007755 2.3e-38 163.3 148 60.1
PSO170G6113 Papaver somniferum HOM05D006270 ORTHO05D007755 3.1e-38 162.9 139 62.6
MSTRG.25449 Avicennia marina HOM05D006270 ORTHO05D007755 4.0e-38 162.5 131 65.6
Gohir.A08G151000 Gossypium hirsutum HOM05D006270 ORTHO05D007755 5.2e-38 162.2 122 66.4
Gohir.D08G172100 Gossypium hirsutum HOM05D006270 ORTHO05D007755 5.2e-38 162.2 122 66.4
Gorai.004G179400 Gossypium raimondii HOM05D006270 ORTHO05D007755 5.2e-38 162.2 122 66.4
Sabra05G0047500 Salix brachista HOM05D006270 ORTHO05D007755 5.2e-38 162.2 234 43.6
AUR62023526 Chenopodium quinoa HOM05D006270 ORTHO05D007755 6.8e-38 161.8 135 64.4
Migut.C01268 Erythranthe guttata HOM05D006270 ORTHO05D007755 6.8e-38 161.8 161 55.3
FvH4_7g31720 Fragaria vesca HOM05D006270 ORTHO05D007755 6.8e-38 161.8 148 59.5
FAN06G0861 Fragaria x ananassa HOM05D006270 ORTHO05D007755 6.8e-38 161.8 148 59.5
FAN06G0691 Fragaria x ananassa HOM05D006270 ORTHO05D007755 1.2e-37 161.0 127 63.8
Psat7g147160 Pisum sativum HOM05D006270 ORTHO05D007755 1.2e-37 161.0 178 52.2
Nn5g27482 Nelumbo nucifera HOM05D006270 ORTHO05D007755 1.5e-37 160.6 124 66.1
SGA_v2.0_scaffold24G10562 Striga asiatica HOM05D006270 ORTHO05D007755 3.4e-37 159.5 185 48.6
TPR.G27896 Trifolium pratense HOM05D006270 ORTHO05D007755 4.4e-37 159.1 174 49.4
Ciclev10021647m.g Citrus clementina HOM05D006270 ORTHO05D007755 7.5e-37 158.3 123 67.5
Lalb_Chr01g0000131 Lupinus albus HOM05D006270 ORTHO05D007755 1.3e-36 157.5 184 53.3
EL10Ac1g00156 Beta vulgaris HOM05D006270 ORTHO05D007755 1.7e-36 157.1 133 65.4
Eucgr.F02983 Eucalyptus grandis HOM05D006270 ORTHO05D007755 1.7e-36 157.1 127 66.1
Aqoxy6G00085 Aquilegia oxysepala HOM05D006270 ORTHO05D007755 2.2e-36 156.8 131 64.1
MELO3C024085.2 Cucumis melo HOM05D006270 ORTHO05D007755 6.4e-36 155.2 181 50.3
DCAR_028408 Daucus carota HOM05D006270 ORTHO05D007755 6.4e-36 155.2 150 55.3
Thecc.03G315400 Theobroma cacao HOM05D006270 ORTHO05D007755 4.1e-35 152.5 122 63.9
SalBow7G0089 Salvia bowleyana HOM05D006270 ORTHO05D007755 9.2e-35 151.4 122 62.3
ClCG09G010100 Citrullus lanatus HOM05D006270 ORTHO05D007755 6.0e-34 148.7 154 54.5
MBI06_g06704_MAGBIO Magnolia biondii HOM05D006270 ORTHO05D007755 1.3e-33 147.5 147 53.7
Cpa.g.sc66.22 Carica papaya HOM05D006270 ORTHO05D007755 1.7e-33 147.1 123 60.2
Peaxi162Scf01013g00026 Petunia axillaris HOM05D006270 ORTHO05D007755 1.7e-33 147.1 145 56.6
CsaV3_7G024750 Cucumis sativus L. HOM05D006270 ORTHO05D007755 8.6e-33 144.8 152 53.9
Zm00001eb304740 Zea mays HOM05D006270 ORTHO05D007755 8.6e-33 144.8 125 61.6
C06p35210 Brassica napus HOM05D006270 ORTHO05D007755 1.9e-32 143.7 152 52.0
BcaC08g45741 Brassica carinata HOM05D006270 ORTHO05D007755 3.3e-32 142.9 152 52.0
BolC6t38627H Brassica oleracea HOM05D006270 ORTHO05D007755 3.3e-32 142.9 152 52.0
CANSAT21G0664 Cannabis sativa HOM05D006270 ORTHO05D007755 4.3e-32 142.5 193 43.5
BcaB03g15641 Brassica carinata HOM05D006270 ORTHO05D007755 5.6e-32 142.1 122 59.0
Nitab4.5_0001579g0080 Nicotiana tabacum HOM05D006270 ORTHO05D007755 7.3e-32 141.7 146 56.8
ATR1136G034 Amborella trichopoda HOM05D006270 ORTHO05D007755 9.5e-32 141.4 132 57.6
A07p30450 Brassica napus HOM05D006270 ORTHO05D007755 9.5e-32 141.4 122 59.0
THA.LOC104809733 Tarenaya hassleriana HOM05D006270 ORTHO05D007755 9.5e-32 141.4 124 61.3
BraA07t30681Z Brassica rapa HOM05D006270 ORTHO05D007755 1.2e-31 141.0 122 59.0
Thhalv10019029m.g Eutrema salsugineum HOM05D006270 ORTHO05D007755 2.1e-31 140.2 155 50.3
Sp5g27100 Schrenkiella parvula HOM05D006270 ORTHO05D007755 2.8e-31 139.8 151 52.3
CARHR064850 Cardamine hirsuta HOM05D006270 ORTHO05D007755 4.7e-31 139.0 155 52.3
AL2G31660 Arabidopsis lyrata HOM05D006270 ORTHO05D007755 6.2e-31 138.7 155 50.3
Carub.0002s1881 Capsella rubella HOM05D006270 ORTHO05D007755 6.2e-31 138.7 156 51.3
Nitab4.5_0000167g0150 Nicotiana tabacum HOM05D006270 ORTHO05D007755 6.2e-31 138.7 147 55.1
AT1G72030 Arabidopsis thaliana HOM05D006270 ORTHO05D007755 1.1e-30 137.9 155 51.0
Aa31LG4G10780 Aethionema arabicum HOM05D006270 ORTHO05D007755 2.3e-30 136.7 139 51.1
HPP92_002765 Vanilla planifolia HOM05D006270 ORTHO05D007755 3.1e-30 136.3 137 54.0
Os07g0264800 Oryza sativa ssp. japonica HOM05D006270 ORTHO05D007755 4.0e-30 136.0 129 58.1
Sed0023542 Sechium edule HOM05D006270 ORTHO05D007755 4.0e-30 136.0 117 59.0
unitig_8.g2905 Utricularia gibba HOM05D006270 ORTHO05D007755 8.9e-30 134.8 122 60.7
Ah.05g178770 Amaranthus hybridus HOM05D006270 ORTHO05D007755 2.2e-28 130.2 130 59.2
CDE04G3476 Ceratophyllum demersum HOM05D006270 ORTHO05D007755 3.5e-26 122.9 97 55.7
GSVIVG01026021001 Vitis vinifera HOM05D000026 ORTHO05D001436 4.6e-26 122.5 101 61.4
CiPaw.16G073500 Carya illinoinensis HOM05D006270 ORTHO05D007755 1.1e-24 117.9 127 52.8
Sopen11g010160 Solanum pennellii HOM05D006270 ORTHO05D007755 1.1e-24 117.9 116 52.6
PGSC0003DMG400034528 Solanum tuberosum HOM05D006270 ORTHO05D007755 1.9e-24 117.1 196 41.8
AagrBONN_evm.TU.Sc2ySwM_228.4762 Anthoceros agrestis HOM05D006270 ORTHO05D007755 1.6e-23 114.0 128 49.2
SEGI_40158 Sequoiadendron giganteum HOM05D006270 ORTHO05D007755 6.2e-23 112.1 146 46.6
PGSC0003DMG400007305 Solanum tuberosum HOM05D006270 ORTHO05D007755 8.1e-23 111.7 195 43.1
SMO352G0005 Selaginella moellendorffii HOM05D006270 ORTHO05D007755 1.8e-22 110.5 124 47.6
Pp3c3_19510 Physcomitrium patens HOM05D006270 ORTHO05D007755 1.5e-21 107.5 132 45.5
COL.COLO4_16875 Corchorus olitorius HOM05D006270 ORTHO05D007755 2.6e-21 106.7 87 62.1
Mapoly0148s0033 Marchantia polymorpha HOM05D006270 ORTHO05D007755 2.2e-20 103.6 127 44.9
Lj7A621T38 Lonicera japonica HOM05D006270 ORTHO05D007755 4.9e-20 102.4 77 68.8
CAN.G1280.16 Capsicum annuum HOM05D006270 ORTHO05D007755 6.4e-20 102.1 126 51.6
Ca_19683_v3 Cicer arietinum L. HOM05D006270 ORTHO05D007755 1.9e-19 100.5 77 64.9
MD01G1220200 Malus domestica HOM05D006270 ORTHO05D007755 6.0e-18 95.5 69 65.2
GSVIVG01026018001 Vitis vinifera HOM05D006270 ORTHO05D007755 1.3e-12 77.8 46 78.3
Solyc11g020000.1 Solanum lycopersicum HOM05D006270 ORTHO05D007755 3.9e-09 66.2 58 55.2


User provided reference genes

Program Settings