Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0031564 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 0.0e+00 1313.5 695 100.0
CSS0015422 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 0.0e+00 1198.0 728 89.7
CSS0031315 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 2.8e-177 626.3 694 57.2
Actinidia18581 Actinidia chinensis HOM05D005926 ORTHO05D007001 1.6e-172 610.5 723 54.8
Rhsim03G0105700 Rhododendron simsii HOM05D005926 ORTHO05D007001 9.9e-167 591.3 711 56.3
CSS0037332 Camellia sinensis var. sinensis HOM05D005926 ORTHO05D007001 1.6e-164 583.9 762 51.0
vmacro07227 Vaccinium macrocarpon HOM05D005926 ORTHO05D007001 7.3e-162 575.1 707 55.0
Dinv30648 Davidia involucrata HOM05D005926 ORTHO05D007001 8.1e-153 545.0 788 48.2
Actinidia28534 Actinidia chinensis HOM05D005926 ORTHO05D007001 7.6e-151 538.5 765 48.8
Ciclev10030805m.g Citrus clementina HOM05D005926 ORTHO05D007001 4.2e-117 426.4 683 44.9
QL04p042256 Quercus lobata HOM05D005926 ORTHO05D007001 3.9e-115 419.9 711 42.2
Manes.07G090100 Manihot esculenta HOM05D005926 ORTHO05D007001 6.5e-110 402.5 722 42.2
GSVIVG01034734001 Vitis vinifera HOM05D005926 ORTHO05D007001 1.4e-107 394.8 759 39.7
Lj2C28T9 Lonicera japonica HOM05D005926 ORTHO05D007001 6.7e-107 392.5 626 47.4
Atru.chr12.975 Acer truncatum HOM05D005926 ORTHO05D007001 9.7e-106 388.7 719 41.2
TAR623G1319 Trochodendron aralioides HOM05D005926 ORTHO05D007001 1.5e-101 374.8 744 40.5
Hma1.2p1_0010F.1_g007030 Hydrangea macrophylla HOM05D005926 ORTHO05D007001 4.0e-99 366.7 477 52.0
CiPaw.14G029200 Carya illinoinensis HOM05D005926 ORTHO05D007001 5.2e-99 366.3 752 39.2
MD02G1248000 Malus domestica HOM05D005926 ORTHO05D007001 5.7e-98 362.8 583 45.5
COL.COLO4_06813 Corchorus olitorius HOM05D005926 ORTHO05D007001 3.7e-97 360.1 709 39.6
Thecc.10G111000 Theobroma cacao HOM05D005926 ORTHO05D007001 6.3e-97 359.4 716 40.8
RcHm_v2.0_Chr1g0333121 Rosa chinensis HOM05D005926 ORTHO05D007001 8.2e-97 359.0 598 44.0
Potri.008G025000 Populus trichocarpa HOM05D005926 ORTHO05D007001 1.4e-96 358.2 712 39.6
Duzib106G0448 Durio zibethinus HOM05D005926 ORTHO05D007001 2.4e-96 357.5 742 38.7
FAN10G2760 Fragaria x ananassa HOM05D005926 ORTHO05D007001 5.3e-96 356.3 618 43.5
Duzib128G1763 Durio zibethinus HOM05D005926 ORTHO05D007001 2.0e-95 354.4 726 40.1
FvH4_7g05860 Fragaria vesca HOM05D005926 ORTHO05D007001 2.7e-95 354.0 598 44.1
CANSAT56G4130 Cannabis sativa HOM05D005926 ORTHO05D007001 4.5e-95 353.2 716 39.8
MD07G1068100 Malus domestica HOM05D005926 ORTHO05D007001 2.2e-94 350.9 583 45.6
FAN03G1852 Fragaria x ananassa HOM05D005926 ORTHO05D007001 4.2e-93 346.7 591 44.7
Cc02_g10060 Coffea canephora HOM05D005926 ORTHO05D007001 8.0e-92 342.4 722 39.2
Gohir.D04G017400 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.4e-91 341.7 758 37.9
Gorai.012G020100 Gossypium raimondii HOM05D005926 ORTHO05D007001 6.8e-91 339.3 756 37.0
Prupe.2G085400 Prunus persica HOM05D005926 ORTHO05D007001 5.7e-90 336.3 599 43.9
Gohir.A05G398500 Gossypium hirsutum HOM05D005926 ORTHO05D007001 1.7e-89 334.7 756 37.2
TAR369G1114 Trochodendron aralioides HOM05D005926 ORTHO05D007001 4.1e-88 330.1 807 37.2
TAR636G3019 Trochodendron aralioides HOM05D005926 ORTHO05D007001 2.5e-85 320.9 556 43.3
TWI63G0673 Tripterygium wilfordii HOM05D005926 ORTHO05D007001 3.2e-85 320.5 709 39.4
ClCG08G008140 Citrullus lanatus HOM05D005926 ORTHO05D007001 8.0e-84 315.8 592 41.6
Sabra08G0016800 Salix brachista HOM05D005926 ORTHO05D007001 1.4e-83 315.1 721 37.6
CsaV3_6G004110 Cucumis sativus L. HOM05D005926 ORTHO05D007001 1.8e-83 314.7 694 38.9
Peaxi162Scf00004g00119 Petunia axillaris HOM05D005926 ORTHO05D007001 5.2e-83 313.2 705 38.7
SalBow6G1645 Salvia bowleyana HOM05D005926 ORTHO05D007001 1.3e-81 308.5 695 39.1
Sabra10G0182600 Salix brachista HOM05D005926 ORTHO05D007001 1.1e-80 305.4 803 35.4
Nn6g35019 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.4e-80 305.1 645 41.7
Nn2g14047 Nelumbo nucifera HOM05D005926 ORTHO05D007001 1.8e-80 304.7 696 37.9
MELO3C019887.2 Cucumis melo HOM05D005926 ORTHO05D007001 4.1e-80 303.5 751 38.5
Eucgr.G02709 Eucalyptus grandis HOM05D005926 ORTHO05D007001 9.2e-80 302.4 714 36.8
Nitab4.5_0001027g0040 Nicotiana tabacum HOM05D005926 ORTHO05D007001 2.7e-79 300.8 702 37.7
Glyma.10G202600 Glycine max HOM05D005926 ORTHO05D007001 3.5e-79 300.4 676 37.7
Lj5g0002236 Lotus japonicus HOM05D005926 ORTHO05D007001 5.9e-79 299.7 692 37.3
Nitab4.5_0012334g0010 Nicotiana tabacum HOM05D005926 ORTHO05D007001 1.3e-78 298.5 682 37.5
Nitab4.5_0002878g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 3.8e-78 297.0 686 36.9
Phvul.007G104500 Phaseolus vulgaris HOM05D005926 ORTHO05D007001 1.5e-77 295.0 692 37.0
PGSC0003DMG400023487 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.9e-77 294.7 699 37.9
Ca_10497_v3 Cicer arietinum L. HOM05D005926 ORTHO05D007001 7.3e-77 292.7 607 40.0
Glyma.20G187800 Glycine max HOM05D005926 ORTHO05D007001 1.6e-76 291.6 607 38.9
DCAR_014349 Daucus carota HOM05D005926 ORTHO05D007001 2.1e-76 291.2 691 37.8
Cpa.g.sc19.23 Carica papaya HOM05D005926 ORTHO05D007001 6.8e-75 286.2 845 33.0
PGR142G4330 Punica granatum HOM05D005926 ORTHO05D007001 1.5e-74 285.0 581 39.1
Psat6g176680 Pisum sativum HOM05D005926 ORTHO05D007001 2.6e-74 284.3 596 39.3
Dinv20819 Davidia involucrata HOM05D005926 ORTHO05D007001 4.4e-74 283.5 353 51.8
Nitab4.5_0003396g0030 Nicotiana tabacum HOM05D005926 ORTHO05D007001 5.7e-74 283.1 592 39.5
Migut.F00893 Erythranthe guttata HOM05D005926 ORTHO05D007001 2.4e-72 277.7 543 40.0
Solyc05g055360.4 Solanum lycopersicum HOM05D005926 ORTHO05D007001 5.4e-72 276.6 700 36.3
TPR.G2562 Trifolium pratense HOM05D005926 ORTHO05D007001 9.2e-72 275.8 594 38.9
Sopen05g033810 Solanum pennellii HOM05D005926 ORTHO05D007001 7.8e-71 272.7 697 36.7
ECA232G4290 Erigeron canadensis HOM05D005926 ORTHO05D007001 4.3e-69 266.9 605 39.2
Medtr1g492840 Medicago truncatula HOM05D005926 ORTHO05D007001 5.6e-69 266.5 602 38.2
Lalb_Chr03g0036371 Lupinus albus HOM05D005926 ORTHO05D007001 2.8e-68 264.2 711 37.7
Sc06g0002210 Simmondsia chinensis HOM05D005926 ORTHO05D007001 5.8e-66 256.5 600 37.5
CAN.G1550.12 Capsicum annuum HOM05D005926 ORTHO05D007001 6.4e-65 253.1 544 39.3
PGSC0003DMG400027309 Solanum tuberosum HOM05D005926 ORTHO05D007001 1.0e-62 245.7 683 34.0
HanXRQChr05g0147041 Helianthus annuus HOM05D005926 ORTHO05D007001 3.0e-62 244.2 613 38.5
Sed0000046 Sechium edule HOM05D005926 ORTHO05D007001 5.0e-62 243.4 657 36.5
arahy.Tifrunner.gnm1.ann1.J9ASUV Arachis hypogaea HOM05D005926 ORTHO05D007001 2.5e-61 241.1 575 37.7
Aqoxy4G02869 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 1.6e-60 238.4 627 35.2
Haze_02593 Corylus avellana HOM05D005926 ORTHO05D007001 1.4e-59 235.3 302 53.6
VMungo0720G0267 Vigna mungo HOM05D005926 ORTHO05D007001 1.4e-59 235.3 650 35.2
AUR62041545 Chenopodium quinoa HOM05D005926 ORTHO05D007001 3.1e-59 234.2 567 35.4
Sed0009709 Sechium edule HOM05D005926 ORTHO05D007001 5.2e-59 233.4 596 36.4
Ah.04g163700 Amaranthus hybridus HOM05D005926 ORTHO05D007001 1.3e-57 228.8 602 34.9
SGA_v2.0_scaffold62G21348 Striga asiatica HOM05D005926 ORTHO05D007001 2.2e-57 228.0 558 36.9
Lsat_1_v5_gn_6_90261 Lactuca sativa HOM05D005926 ORTHO05D007001 9.2e-56 222.6 576 37.8
Aqoxy2G01361 Aquilegia oxysepala HOM05D005926 ORTHO05D007001 5.1e-54 216.9 686 32.7
Solyc11g007510.2 Solanum lycopersicum HOM05D005926 ORTHO05D007001 4.3e-53 213.8 494 37.2
Sopen11g003350 Solanum pennellii HOM05D005926 ORTHO05D007001 5.6e-53 213.4 611 32.9
EL10Ac4g08669 Beta vulgaris HOM05D005926 ORTHO05D007001 7.3e-53 213.0 704 31.7
THA.LOC104814724 Tarenaya hassleriana HOM05D005926 ORTHO05D007001 8.9e-51 206.1 573 33.5
Carub.0005s1860 Capsella rubella HOM05D005926 ORTHO05D007001 1.7e-49 201.8 644 31.7
PSO384G0761 Papaver somniferum HOM05D005926 ORTHO05D007001 1.4e-48 198.7 536 36.0
Thhalv10010215m.g Eutrema salsugineum HOM05D005926 ORTHO05D007001 1.2e-47 195.7 615 32.7
PSO339G4155 Papaver somniferum HOM05D005926 ORTHO05D007001 1.0e-46 192.6 540 36.3
AL5G32830 Arabidopsis lyrata HOM05D005926 ORTHO05D007001 2.3e-46 191.4 638 30.7
CARHR161990 Cardamine hirsuta HOM05D005926 ORTHO05D007001 3.0e-46 191.0 606 32.7
AT3G52240 Arabidopsis thaliana HOM05D005926 ORTHO05D007001 8.6e-46 189.5 638 29.9
Sp5g10020 Schrenkiella parvula HOM05D005926 ORTHO05D007001 5.8e-42 176.8 629 29.9
arahy.Tifrunner.gnm1.ann1.9BC44J Arachis hypogaea HOM05D005926 ORTHO05D007001 2.2e-41 174.9 501 33.5
BcaB02g08582 Brassica carinata HOM05D005926 ORTHO05D007001 8.4e-41 172.9 587 30.3
A09p45300 Brassica napus HOM05D005926 ORTHO05D007001 2.3e-38 164.9 586 28.8
PSO443G0029 Papaver somniferum HOM05D005926 ORTHO05D007001 2.3e-38 164.9 361 39.9
BraA09t39993Z Brassica rapa HOM05D005926 ORTHO05D007001 3.9e-38 164.1 578 29.1
C04p40700 Brassica napus HOM05D005926 ORTHO05D007001 3.3e-37 161.0 571 31.5
A04p07120 Brassica napus HOM05D005926 ORTHO05D007001 4.3e-37 160.6 582 30.8
C08p27480 Brassica napus HOM05D005926 ORTHO05D007001 5.6e-37 160.2 680 28.2
BolC8t50365H Brassica oleracea HOM05D005926 ORTHO05D007001 5.6e-37 160.2 680 28.2
BolC4t25653H Brassica oleracea HOM05D005926 ORTHO05D007001 2.8e-36 157.9 574 30.5
BcaC02g09269 Brassica carinata HOM05D005926 ORTHO05D007001 3.6e-36 157.5 583 30.9
GSVIVG01031385001 Vitis vinifera HOM05D005926 ORTHO05D007001 8.1e-36 156.4 569 31.8
BraA04t16409Z Brassica rapa HOM05D005926 ORTHO05D007001 2.4e-35 154.8 592 30.2
Haze_02594 Corylus avellana HOM05D005926 ORTHO05D007001 2.4e-35 154.8 416 33.7
Aa31LG10G7340 Aethionema arabicum HOM05D005926 ORTHO05D007001 7.6e-34 149.8 632 28.6
BcaC07g39594 Brassica carinata HOM05D005926 ORTHO05D007001 1.7e-33 148.7 670 27.6
CDE04G2986 Ceratophyllum demersum HOM05D005926 ORTHO05D007001 4.9e-33 147.1 594 30.1
ATR0820G003 Amborella trichopoda HOM05D005926 ORTHO05D007001 3.7e-28 131.0 599 28.5
Os05g0445800 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.8e-28 130.6 332 35.5
Oeu026567.1 Olea europaea HOM05D005926 ORTHO05D007001 3.4e-26 124.4 418 31.1
Os05g0446500 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 4.2e-24 117.5 334 34.1
Zm00001eb289020 Zea mays HOM05D005926 ORTHO05D007001 1.3e-22 112.5 333 33.9
Zm00001eb147390 Zea mays HOM05D005926 ORTHO05D007001 1.3e-20 105.9 291 34.4
arahy.Tifrunner.gnm1.ann1.UA3HQT Arachis hypogaea HOM05D005926 ORTHO05D007001 1.0e-17 96.3 273 35.2
arahy.Tifrunner.gnm1.ann1.L8M84U Arachis hypogaea HOM05D005926 ORTHO05D007001 1.9e-16 92.0 273 34.4
unitig_0.g760 Utricularia gibba HOM05D005926 ORTHO05D007001 1.9e-16 92.0 557 28.5
HPP92_002057 Vanilla planifolia HOM05D005926 ORTHO05D007001 7.9e-15 86.7 196 40.3
Os04g0646050 Oryza sativa ssp. japonica HOM05D005926 ORTHO05D007001 1.0e-14 86.3 84 57.1
SEGI_23583 Sequoiadendron giganteum HOM05D005926 ORTHO05D007001 1.0e-14 86.3 366 29.8
Pp3c6_4890 Physcomitrium patens HOM05D031130 ORTHO05D019295 1.3e-06 59.3 50 66.0
Actinidia31091 Actinidia chinensis HOM05D005926 ORTHO05D007001 2.3e-06 58.5 432 23.8


User provided reference genes

Program Settings